Literature DB >> 35296935

Complete genome sequence analysis and phylogenetic classification of the novel Aeromonas phage AHP-1, a potential member of the genus Tequatrovirus.

Chamilani Nikapitiya1, Amal Senevirathne1, S H S Dananjaya1, Nipuna Tennakoon1, Hyun-Jin Shin1, Jehee Lee2,3, Mahanama De Zoysa4,5.   

Abstract

Aeromonas phage AHP-1 was originally isolated from crucian carp (Carassius carassius) tissue. It was able to infect Aeromonas hydrophila and A. salmonicida. Genome sequence analysis revealed a 218,317-bp-long linear genome with an overall G + C content of 47.9%, 315 open reading frames (ORFs), and 25 tRNA sequences. Its genome was found to contain 67 unique ORFs (21.26%) that did not show any homology to previously characterized proteins. A comparative genome analysis suggested that its closest neighbors are unclassified phages belonging to the genus Tequatrovirus of the subfamily Tevenvirinae.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.

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Year:  2022        PMID： 35296935     DOI： 10.1007/s00705-022-05418-6

Source DB:  PubMed          Journal:  Arch Virol        ISSN： 0304-8608            Impact factor:   2.574


  21 in total

Review 1.  The SPO1-related bacteriophages.

Authors:  Jochen Klumpp; Rob Lavigne; Martin J Loessner; Hans-Wolfgang Ackermann
Journal:  Arch Virol       Date:  2010-08-17       Impact factor: 2.574

2.  Prevalence of Bacillus cereus bacteriophages in fermented foods and characterization of phage JBP901.

Authors:  Hakdong Shin; Nadeeka Bandara; Eunmi Shin; Sangryeol Ryu; Kwang-pyo Kim
Journal:  Res Microbiol       Date:  2011-07-20       Impact factor: 3.992

3.  Isolation and Characterization of Multidrug Resistance Aeromonas salmonicida subsp. salmonicida and Its Infecting Novel Phage ASP-1 from Goldfish (Carassius auratus).

Authors:  Chamilani Nikapitiya; S H S Dananjaya; H P S U Chandrarathna; Amal Senevirathne; Mahanama De Zoysa; Jehee Lee
Journal:  Indian J Microbiol       Date:  2019-02-04       Impact factor: 2.461

4.  Aeromonas hydrophila infection in silver catfish causes hyperlocomotion related to stress.

Authors:  Guerino Bandeira Junior; Carine de Freitas Souza; Sharine Nunes Descovi; Alfredo Antoniazzi; Juliana Felipetto Cargnelutti; Bernardo Baldisserotto
Journal:  Microb Pathog       Date:  2019-05-10       Impact factor: 3.738

5.  Terminal proteins and short inverted terminal repeats of the small Bacillus bacteriophage genomes.

Authors:  H Yoshikawa; J Ito
Journal:  Proc Natl Acad Sci U S A       Date:  1981-04       Impact factor: 11.205

6.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

7.  Aeromonas Hydrophila Endocarditis with Ruptured Mycotic Aneurysm of Right Renal Artery.

Authors:  Maria Elena Pugliese; Marco Falcone; Alessandra Oliva; Federico Faccenna; Denise D'Aluisio; Sergio Morelli
Journal:  Infect Dis Rep       Date:  2016-10-03

8.  The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

Authors:  Ross Overbeek; Robert Olson; Gordon D Pusch; Gary J Olsen; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Bruce Parrello; Maulik Shukla; Veronika Vonstein; Alice R Wattam; Fangfang Xia; Rick Stevens
Journal:  Nucleic Acids Res       Date:  2013-11-29       Impact factor: 16.971

9.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

10.  A Roadmap for Genome-Based Phage Taxonomy.

Authors:  Dann Turner; Andrew M Kropinski; Evelien M Adriaenssens
Journal:  Viruses       Date:  2021-03-18       Impact factor: 5.048
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