Literature DB >> 35294859

Cryo-EM structures reveal multiple stages of bacterial outer membrane protein folding.

Matthew Thomas Doyle1, John R Jimah2, Tyrone Dowdy3, Shannon I Ohlemacher4, Mioara Larion3, Jenny E Hinshaw5, Harris D Bernstein6.   

Abstract

Transmembrane β barrel proteins are folded into the outer membrane (OM) of Gram-negative bacteria by the β barrel assembly machinery (BAM) via a poorly understood process that occurs without known external energy sources. Here, we used single-particle cryo-EM to visualize the folding dynamics of a model β barrel protein (EspP) by BAM. We found that BAM binds the highly conserved "β signal" motif of EspP to correctly orient β strands in the OM during folding. We also found that the folding of EspP proceeds via "hybrid-barrel" intermediates in which membrane integrated β sheets are attached to the essential BAM subunit, BamA. The structures show an unprecedented deflection of the membrane surrounding the EspP intermediates and suggest that β sheets progressively fold toward BamA to form a β barrel. Along with in vivo experiments that tracked β barrel folding while the OM tension was modified, our results support a model in which BAM harnesses OM elasticity to accelerate β barrel folding.
Copyright © 2022. Published by Elsevier Inc.

Entities:  

Keywords:  BAM; membrane dynamics; membrane protein folding; outer membrane protein; β barrel

Mesh:

Substances:

Year:  2022        PMID: 35294859      PMCID: PMC8985213          DOI: 10.1016/j.cell.2022.02.016

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  77 in total

1.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

2.  C-terminal kink formation is required for lateral gating in BamA.

Authors:  Karl Lundquist; Jeremy Bakelar; Nicholas Noinaj; James C Gumbart
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-07       Impact factor: 11.205

3.  The gain-of-function allele bamA E470K bypasses the essential requirement for BamD in β-barrel outer membrane protein assembly.

Authors:  Elizabeth M Hart; Meera Gupta; Martin Wühr; Thomas J Silhavy
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-16       Impact factor: 11.205

4.  Substrate binding to BamD triggers a conformational change in BamA to control membrane insertion.

Authors:  James Lee; Holly A Sutterlin; Joseph S Wzorek; Michael D Mandler; Christine L Hagan; Marcin Grabowicz; David Tomasek; Mary D May; Elizabeth M Hart; Thomas J Silhavy; Daniel Kahne
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-20       Impact factor: 11.205

5.  Molecular basis for the activation of a catalytic asparagine residue in a self-cleaving bacterial autotransporter.

Authors:  Travis J Barnard; James Gumbart; Janine H Peterson; Nicholas Noinaj; Nicole C Easley; Nathalie Dautin; Adam J Kuszak; Emad Tajkhorshid; Harris D Bernstein; Susan K Buchanan
Journal:  J Mol Biol       Date:  2011-11-07       Impact factor: 5.469

6.  The evolution of new lipoprotein subunits of the bacterial outer membrane BAM complex.

Authors:  Khatira Anwari; Chaille T Webb; Sebastian Poggio; Andrew J Perry; Matthew Belousoff; Nermin Celik; Georg Ramm; Andrew Lovering; R Elizabeth Sockett; John Smit; Christine Jacobs-Wagner; Trevor Lithgow
Journal:  Mol Microbiol       Date:  2012-04-23       Impact factor: 3.501

7.  Membrane defects accelerate outer membrane β-barrel protein folding.

Authors:  Emily J Danoff; Karen G Fleming
Journal:  Biochemistry       Date:  2014-12-22       Impact factor: 3.162

8.  New tools for automated high-resolution cryo-EM structure determination in RELION-3.

Authors:  Jasenko Zivanov; Takanori Nakane; Björn O Forsberg; Dari Kimanius; Wim Jh Hagen; Erik Lindahl; Sjors Hw Scheres
Journal:  Elife       Date:  2018-11-09       Impact factor: 8.140

9.  IDH1 mutations induce organelle defects via dysregulated phospholipids.

Authors:  Adrian Lita; Artem Pliss; Andrey Kuzmin; Tomohiro Yamasaki; Lumin Zhang; Tyrone Dowdy; Christina Burks; Natalia de Val; Orieta Celiku; Victor Ruiz-Rodado; Elena-Raluca Nicoli; Michael Kruhlak; Thorkell Andresson; Sudipto Das; Chunzhang Yang; Rebecca Schmitt; Christel Herold-Mende; Mark R Gilbert; Paras N Prasad; Mioara Larion
Journal:  Nat Commun       Date:  2021-01-27       Impact factor: 14.919

10.  The outer membrane is an essential load-bearing element in Gram-negative bacteria.

Authors:  Enrique R Rojas; Gabriel Billings; Pascal D Odermatt; George K Auer; Lillian Zhu; Amanda Miguel; Fred Chang; Douglas B Weibel; Julie A Theriot; Kerwyn Casey Huang
Journal:  Nature       Date:  2018-07-18       Impact factor: 49.962

View more
  5 in total

1.  Modeling intermediates of BamA folding an outer membrane protein.

Authors:  Katie M Kuo; David Ryoo; Karl Lundquist; James C Gumbart
Journal:  Biophys J       Date:  2022-08-04       Impact factor: 3.699

2.  Overexpression of the Bam Complex Improves the Production of Chlamydia trachomatis MOMP in the E. coli Outer Membrane.

Authors:  Dung T Huynh; Wouter S P Jong; Gregory M Koningstein; Peter van Ulsen; Joen Luirink
Journal:  Int J Mol Sci       Date:  2022-07-02       Impact factor: 6.208

3.  Peptidoglycan maturation controls outer membrane protein assembly.

Authors:  Gideon Mamou; Federico Corona; Ruth Cohen-Khait; Nicholas G Housden; Vivian Yeung; Dawei Sun; Pooja Sridhar; Manuel Pazos; Timothy J Knowles; Colin Kleanthous; Waldemar Vollmer
Journal:  Nature       Date:  2022-06-15       Impact factor: 69.504

4.  Dynamic interplay between the periplasmic chaperone SurA and the BAM complex in outer membrane protein folding.

Authors:  Bob Schiffrin; Jonathan M Machin; Theodoros K Karamanos; Anastasia Zhuravleva; David J Brockwell; Sheena E Radford; Antonio N Calabrese
Journal:  Commun Biol       Date:  2022-06-08

Review 5.  Detergent-Free Isolation of Membrane Proteins and Strategies to Study Them in a Near-Native Membrane Environment.

Authors:  Bankala Krishnarjuna; Ayyalusamy Ramamoorthy
Journal:  Biomolecules       Date:  2022-08-04
  5 in total

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