Literature DB >> 35292632

Myosin VI regulates the spatial organisation of mammalian transcription initiation.

Yukti Hari-Gupta1,2, Natalia Fili3,4, Ália Dos Santos3, Alexander W Cook3, Rosemarie E Gough3, Hannah C W Reed1, Lin Wang5, Jesse Aaron6, Tomas Venit7, Eric Wait6, Andreas Grosse-Berkenbusch8, J Christof M Gebhardt8, Piergiorgio Percipalle7,9, Teng-Leong Chew6, Marisa Martin-Fernandez5, Christopher P Toseland10.   

Abstract

During transcription, RNA Polymerase II (RNAPII) is spatially organised within the nucleus into clusters that correlate with transcription activity. While this is a hallmark of genome regulation in mammalian cells, the mechanisms concerning the assembly, organisation and stability remain unknown. Here, we have used combination of single molecule imaging and genomic approaches to explore the role of nuclear myosin VI (MVI) in the nanoscale organisation of RNAPII. We reveal that MVI in the nucleus acts as the molecular anchor that holds RNAPII in high density clusters. Perturbation of MVI leads to the disruption of RNAPII localisation, chromatin organisation and subsequently a decrease in gene expression. Overall, we uncover the fundamental role of MVI in the spatial regulation of gene expression.
© 2022. The Author(s).

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Year:  2022        PMID: 35292632      PMCID: PMC8924246          DOI: 10.1038/s41467-022-28962-w

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  64 in total

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Authors:  Heidi Sutherland; Wendy A Bickmore
Journal:  Nat Rev Genet       Date:  2009-07       Impact factor: 53.242

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Authors:  Zhibin Wang; Chongzhi Zang; Jeffrey A Rosenfeld; Dustin E Schones; Artem Barski; Suresh Cuddapah; Kairong Cui; Tae-Young Roh; Weiqun Peng; Michael Q Zhang; Keji Zhao
Journal:  Nat Genet       Date:  2008-06-15       Impact factor: 38.330

3.  The START App: a web-based RNAseq analysis and visualization resource.

Authors:  Jonathan W Nelson; Jiri Sklenar; Anthony P Barnes; Jessica Minnier
Journal:  Bioinformatics       Date:  2017-02-01       Impact factor: 6.937

4.  ShinyGO: a graphical gene-set enrichment tool for animals and plants.

Authors:  Steven Xijin Ge; Dongmin Jung; Runan Yao
Journal:  Bioinformatics       Date:  2020-04-15       Impact factor: 6.937

5.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

6.  Nuclear myosin VI enhances RNA polymerase II-dependent transcription.

Authors:  Sarah Vreugde; Carmelo Ferrai; Annarita Miluzio; Ehud Hauben; Pier Carlo Marchisio; Massimo P Crippa; Mario Bussi; Stefano Biffo
Journal:  Mol Cell       Date:  2006-09-01       Impact factor: 17.970

7.  Visualization of focal sites of transcription within human nuclei.

Authors:  D A Jackson; A B Hassan; R J Errington; P R Cook
Journal:  EMBO J       Date:  1993-03       Impact factor: 11.598

8.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

9.  Super-resolution imaging of fluorescently labeled, endogenous RNA Polymerase II in living cells with CRISPR/Cas9-mediated gene editing.

Authors:  Won-Ki Cho; Namrata Jayanth; Susan Mullen; Tzer Han Tan; Yoon J Jung; Ibrahim I Cissé
Journal:  Sci Rep       Date:  2016-10-26       Impact factor: 4.379

10.  Competition between two high- and low-affinity protein-binding sites in myosin VI controls its cellular function.

Authors:  Natalia Fili; Yukti Hari-Gupta; Bjork Aston; Ália Dos Santos; Rosemarie E Gough; Bana Alamad; Lin Wang; Marisa L Martin-Fernandez; Christopher P Toseland
Journal:  J Biol Chem       Date:  2019-11-19       Impact factor: 5.486

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  3 in total

Review 1.  Mechanical regulation of chromatin and transcription.

Authors:  Sirio Dupont; Sara A Wickström
Journal:  Nat Rev Genet       Date:  2022-05-23       Impact factor: 59.581

2.  Genome-Directed Cell Nucleus Assembly.

Authors:  Sergey V Razin; Sergey V Ulianov
Journal:  Biology (Basel)       Date:  2022-05-05

3.  Binding partners regulate unfolding of myosin VI to activate the molecular motor.

Authors:  Ália Dos Santos; Natalia Fili; Yukti Hari-Gupta; Rosemarie E Gough; Lin Wang; Marisa Martin-Fernandez; Jesse Aaron; Eric Wait; Teng-Leong Chew; Christopher P Toseland
Journal:  Biochem J       Date:  2022-07-15       Impact factor: 3.766

  3 in total

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