Literature DB >> 35287470

Ribonucleotide Incorporation by Eukaryotic B-Family Replicases and Its Implications for Genome Stability.

Jessica S Williams1, Thomas A Kunkel1.   

Abstract

Our current view of how DNA-based genomes are efficiently and accurately replicated continues to evolve as new details emerge on the presence of ribonucleotides in DNA. Ribonucleotides are incorporated during eukaryotic DNA replication at rates that make them the most common noncanonical nucleotide placed into the nuclear genome, they are efficiently repaired, and their removal impacts genome integrity. This review focuses on three aspects of this subject: the incorporation of ribonucleotides into the eukaryotic nuclear genome during replication by B-family DNA replicases, how these ribonucleotides are removed, and the consequences of their presence or removal for genome stability and disease.

Entities:  

Keywords:  DNA polymerase; DNA repair; genome stability; mutagenesis; ribonucleotide

Mesh:

Substances:

Year:  2022        PMID: 35287470      PMCID: PMC9384702          DOI: 10.1146/annurev-biochem-032620-110354

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   27.258


  137 in total

1.  Evidence that errors made by DNA polymerase alpha are corrected by DNA polymerase delta.

Authors:  Y I Pavlov; C Frahm; S A Nick McElhinny; A Niimi; M Suzuki; T A Kunkel
Journal:  Curr Biol       Date:  2006-01-24       Impact factor: 10.834

2.  Excision of misincorporated ribonucleotides in DNA by RNase H (type 2) and FEN-1 in cell-free extracts.

Authors:  Bjorn Rydberg; John Game
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-10       Impact factor: 11.205

3.  Terminal deoxynucleotidyl transferase indiscriminately incorporates ribonucleotides and deoxyribonucleotides.

Authors:  J B Boulé; F Rougeon; C Papanicolaou
Journal:  J Biol Chem       Date:  2001-06-13       Impact factor: 5.157

4.  Genome-wide mutagenesis resulting from topoisomerase 1-processing of unrepaired ribonucleotides in DNA.

Authors:  Jessica S Williams; Scott A Lujan; Zhi-Xiong Zhou; Adam B Burkholder; Alan B Clark; David C Fargo; Thomas A Kunkel
Journal:  DNA Repair (Amst)       Date:  2019-07-03

5.  Polymerase mu is a DNA-directed DNA/RNA polymerase.

Authors:  Stephanie A Nick McElhinny; Dale A Ramsden
Journal:  Mol Cell Biol       Date:  2003-04       Impact factor: 4.272

6.  RNase-sensitive DNA modification(s) initiates S. pombe mating-type switching.

Authors:  Sonya Vengrova; Jacob Z Dalgaard
Journal:  Genes Dev       Date:  2004-04-01       Impact factor: 11.361

7.  DNA Polymerase Delta Synthesizes Both Strands during Break-Induced Replication.

Authors:  Roberto A Donnianni; Zhi-Xiong Zhou; Scott A Lujan; Amr Al-Zain; Valerie Garcia; Eleanor Glancy; Adam B Burkholder; Thomas A Kunkel; Lorraine S Symington
Journal:  Mol Cell       Date:  2019-09-05       Impact factor: 17.970

8.  Strand displacement synthesis by yeast DNA polymerase ε.

Authors:  Rais A Ganai; Xiao-Ping Zhang; Wolf-Dietrich Heyer; Erik Johansson
Journal:  Nucleic Acids Res       Date:  2016-06-20       Impact factor: 16.971

Review 9.  One, No One, and One Hundred Thousand: The Many Forms of Ribonucleotides in DNA.

Authors:  Giulia Maria Nava; Lavinia Grasso; Sarah Sertic; Achille Pellicioli; Marco Muzi Falconi; Federico Lazzaro
Journal:  Int J Mol Sci       Date:  2020-03-02       Impact factor: 5.923

10.  Avoidance of ribonucleotide-induced mutations by RNase H2 and Srs2-Exo1 mechanisms.

Authors:  Catherine J Potenski; Hengyao Niu; Patrick Sung; Hannah L Klein
Journal:  Nature       Date:  2014-06-01       Impact factor: 49.962

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  1 in total

1.  Efficient replication of human nuclear DNA.

Authors:  Thomas A Kunkel
Journal:  Cell Res       Date:  2022-09       Impact factor: 46.297

  1 in total

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