| Literature DB >> 35284867 |
Luis Fernando Chaves1, José Angel Valerín Cordero2, Gabriela Delgado3, Carlos Aguilar-Avendaño3, Ezequías Maynes3, José Manuel Gutiérrez Alvarado3, Melissa Ramírez Rojas1, Luis Mario Romero4, Rodrigo Marín Rodríguez1,3.
Abstract
Problems with vector surveillance are a major barrier for the effective control of vector-borne disease transmission through Latin America. Here, we present results from a 80-week longitudinal study where Aedes aegypti (L.) (Diptera: Culicidae) ovitraps were monitored weekly at 92 locations in Puntarenas, a coastal city in Costa Rica with syndemic Zika, chikungunya and dengue transmission. We used separate models to investigate the association of either Ae. aegypti-borne arboviral cases or Ae. aegypti egg counts with remotely sensed environmental variables. We also evaluated whether Ae. aegypti-borne arboviral cases were associated with Ae. aegypti egg counts. Using cross-correlation and time series modeling, we found that arboviral cases were not significantly associated with Ae. aegypti egg counts. Through model selection we found that cases had a non-linear response to multi-scale (1-km and 30-m resolution) measurements of temperature standard deviation (SD) with a lag of up to 4 weeks, while simultaneously increasing with finely-grained NDVI (30-m resolution). Meanwhile, median ovitrap Ae. aegypti egg counts increased, and respectively decreased, with temperature SD (1-km resolution) and EVI (30-m resolution) with a lag of 6 weeks. A synchrony analysis showed that egg counts had a travelling wave pattern, with synchrony showing cyclic changes with distance, a pattern not observed in remotely sensed data with 30-m and 10-m resolution. Spatially, using generalized additive models, we found that eggs were more abundant at locations with higher temperatures and where EVI was leptokurtic during the study period. Our results suggest that, in Puntarenas, remotely sensed environmental variables are associated with both Ae. aegypti-borne arbovirus transmission and Ae. aegypti egg counts from ovitraps.Entities:
Keywords: Landsat 8; MODIS; Model selection; Oviposition; Schmalhausen’s law; Sentinel 2; Synchrony; Syndemic arboviruses
Year: 2021 PMID: 35284867 PMCID: PMC8906134 DOI: 10.1016/j.crpvbd.2021.100014
Source DB: PubMed Journal: Curr Res Parasitol Vector Borne Dis ISSN: 2667-114X
Fig. 1Map of Costa Rica and Puntarenas city. The map highlights the location of Puntarenas county and the inset map highlights the urban area of Puntarenas city and the Puntarenas peninsula part of Puntarenas district. The base image for the main map is from a public domain map from the US National Park Service (USNPS, 2020), while the inset base image is courtesy of Google maps
Fig. 2Ovitraps. A Ovitrap label indicating its use for dengue vector surveillance and providing contact information for the Programa de Manejo Integrado de Vectores of Costa Ricaʼs Ministry of Health. B Field deployment of an ovitrap, next to a plant pot, a common larval habitat for Aedes aegypti in Puntarenas, Costa Rica
Fig. 3Ovitrap sampling locations. Ovitraps are indicated by dots on the map. The location of only 83 of 92 the ovitraps are shown since 9 records had ambiguous addresses that could not be found using Google maps. The base image is courtesy of Google maps
Fig. 4Arboviral cases and mosquito time series. A Weekly counts of Aedes aegypti-borne arboviral cases in Puntarenas County. B Weekly distribution of Ae. aegypti egg counts across the ovitrap sampling locations. C Weekly standard deviation (SD) of Ae. aegypti egg counts across the ovitrap sampling locations. D Weekly kurtosis (K) of Ae. aegypti egg counts across the ovitrap sampling locations. Raw data including individual time series for each ovitrap sampling location are presented in Supplementary Fig. S3 at the journal website. See the inset legends for further details
Fig. 5Remotely sensed environmental time series. A Weekly mean land surface temperature derived from satellite images. B Weekly NDVI derived from satellite images. C Weekly EVI derived from satellite images. Temperature data originate from daily MODIS images, and Landsat 8 images collected every 8 days. NDVI and EVI time series also included Sentinel 2 data, which were collected every 3.4 ± 2.0 days (mean ± SD). For guidance, please refer to the inset legend of panel A. Raw and weekly smoothed data used to estimate these time series are presented in Supplementary Fig. S2 for MODIS and Landsat 8 land surface temperature, and raw data for the NDVI and EVI, derived from MODIS, Landsat 8 and Sentinel 2 are provided in Supplementary Fig. S5
Fig. 6Correlation functions. A Autocorrelation (ACF) and B partial autocorrelation function (PACF) for arboviral cases and median number, per ovitrap, of Aedes aegypti egg counts weekly time series. Lines are identified in the inset legend of panel B. C Cross-correlation function (CCF) between weekly arboviral cases and MODIS-based environmental variables, including land surface temperature, NDVI and EVI mean values, and also the standard deviation (SD) and kurtosis (K) of land surface temperature. D CCF between weekly arboviral cases and Landsat 8-based environmental variables, including land surface temperature, NDVI and EVI mean values, and also the SD and kurtosis of land surface temperature. E CCF between median Ae. aegypti egg counts and MODIS-based environmental variables, including land surface temperature, NDVI and EVI mean values, and also the SD and kurtosis (K) of land surface temperature. F CCF between median Ae. aegypti egg counts and Landsat 8-based environmental variables, including land surface temperature, NDVI and EVI mean values, and also the SD and kurtosis (K) of land surface temperature. In all panels the dot-dashed 95% confidence interval lines (see panel A for reference) indicate that correlations within the area are expected by chance. This means that peaks outside the 95% confidence interval lines are the time lags at which the number of arboviral cases (or median egg counts) was associated with itself in the ACF and PACF plots, or with the covariates in the CCF plots
Model selection for the best time series model explaining counts of arbovirus cases at Puntarenas City, Costa Rica
| Variables (Lag) | AIC |
|---|---|
| Null model: Autoregressive (1), Seasonal Autoregressive (3) | 447.94 |
| Full model: Autoregressive (1), Seasonal Autoregressive (3), MODIS-Temperature (4), MODIS-SD Temperature (3), MODIS-SD Temperature (4), MODIS-EVI (5), MODIS-NDVI (5), Landsat 8-Temperature (0), Landsat 8-SD temperature (1), Landsat 8-NDVI (0), Landsat 8-EVI (4) | 436.08 |
| Autoregressive (1), Seasonal Autoregressive (3), MODIS-SD Temperature (3), MODIS-SD Temperature (4), MODIS-EVI (5), MODIS-NDVI (5), Landsat 8-Temperature (0), Landsat 8-SD temperature (1), Landsat 8-NDVI (0), Landsat 8-EVI (4) | 434.27 |
| Autoregressive (1), Seasonal Autoregressive (3), MODIS-SD Temperature (3), MODIS-SD Temperature (4), MODIS-EVI (5), MODIS-NDVI (5), Landsat 8-Temperature (0), Landsat 8-SD temperature (1), Landsat 8-NDVI (0), Landsat 8-EVI (4) | 432.52 |
| Autoregressive (1), Seasonal Autoregressive (3), MODIS-SD Temperature (3), MODIS-SD Temperature (4), MODIS-EVI (5), Landsat 8-Temperature (0), Landsat 8-SD temperature (1), Landsat 8-NDVI (0), Landsat 8-EVI (4) | 432.07 |
| Autoregressive (1), Seasonal Autoregressive (3), MODIS-SD Temperature (3), MODIS-SD Temperature (4), MODIS-EVI (5), Landsat 8-Temperature (0), Landsat 8-SD temperature (1), Landsat 8-NDVI (0) | 431.56 |
| Autoregressive (1), Seasonal Autoregressive (3), MODIS-SD Temperature (3), MODIS-SD Temperature (4), Landsat 8-Temperature (0), Landsat 8-SD temperature (1), Landsat 8-NDVI (0) |
Notes: AIC indicates the Akaike information criterion for each model. AIC is minimized by the best model, which is presented in bold. Lag indicates the time lag (in epidemiological weeks) for the correlation between arbovirus case number and the environmental variables considered.
Parameter estimates for the best time series model explaining counts of arbovirus cases at Puntarenas City, Costa Rica
| Parameter | Estimate ± SE |
|---|---|
| Mean | 6.676 ± 6.166 |
| Autoregressive (1-week lag) | 0.416 ± 0.107 |
| Seasonal autoregressive (3-weeks lag) | 0.285 ± 0.114 |
| MODIS-based SD of temperature with 3-weeks lag | −0.468 ± 0.226 |
| MODIS-based SD of temperature with 4-weeks lag | 0.488 ± 0.230 |
| Landsat 8-based SD of temperature with 1-week lag | −4.869 ± 1.766 |
| Landsat 8-based NDVI without a time lag | 38.807 ± 15.426 |
| Variance error | 10.46 |
Abbreviation: SE, standard error.
Statistically significant (P <0.05).
Model selection for the best time series model explaining the median number of Aedes aegypti eggs per ovitrap at Puntarenas City, Costa Rica
| Variables (Lag) | AIC |
|---|---|
| Null model: Autoregressive (1), Seasonal Autoregressive (3) | 588.92 |
| Full model: Autoregressive (1), Seasonal Autoregressive (3), MODIS-Temperature (7), MODIS-SD Temperature (6), MODIS-NDVI (8), MODIS-EVI (8), Landsat 8-Temperature (6), Landsat 8-SD Temperature (5), Landsat 8-NDVI (2), Landsat 8-EVI (6) | 574.96 |
| Autoregressive (1), Seasonal Autoregressive (3), MODIS-Temperature (7), MODIS-SD Temperature (6), MODIS-NDVI (8), MODIS-EVI (8), Landsat 8-Temperature (6), Landsat 8-NDVI (2), Landsat 8-EVI (6) | 573.25 |
| Autoregressive (1), Seasonal Autoregressive (3), MODIS-SD Temperature (6), MODIS-NDVI (8), MODIS-EVI (8), Landsat 8-Temperature (6), Landsat 8-NDVI (2), Landsat 8-EVI (6) | 571.62 |
| Autoregressive (1), Seasonal Autoregressive (3), MODIS-SD Temperature (6), MODIS-EVI (8), Landsat 8-Temperature (6), Landsat 8-NDVI (2), Landsat 8-EVI (6) | 570.99 |
| Autoregressive (1), Seasonal Autoregressive (3), MODIS-SD Temperature (6), Landsat 8-Temperature (6), Landsat 8-NDVI (2), Landsat 8-EVI (6) | 570.03 |
| Autoregressive (1), Seasonal Autoregressive (3), MODIS-SD Temperature (6), Landsat 8-Temperature (6), Landsat 8-EVI (6) | 569.90 |
| Autoregressive (1), Seasonal Autoregressive (3), MODIS-SD Temperature (6), Landsat 8-EVI (6) | |
| Autoregressive (1), MODIS-SD Temperature (6), Landsat 8-EVI (6) | 571.18 |
Notes: AIC indicates the Akaike information criterion for each model. AIC is minimized by the best model, which is presented in bold. Lag indicates the time lag (in epidemiological weeks) for the correlation between arbovirus case number and the environmental variables considered.
Selected as best model due to the lack of a significant difference with the model minimizing AIC, through a Chi-square likelihood ratio test (χ2 = 1.641, df = 1, P > 0.200).
Parameter estimates for the best time series model explaining the median number of Aedes aegypti eggs per ovitrap at Puntarenas City, Costa Rica
| Parameter | Estimate ± SE |
|---|---|
| Mean | 51.074 ± 10.775 |
| Autoregressive (1-week lag) | 0.400 ± 0.107 |
| MODIS-based SD of temperature with 6-weeks lag | 2.820 ± 0.609 |
| Landsat 8-based EVI with 6-weeks lag | −69.462 ± 19.297 |
| Variance error | 65.02 |
Abbreviation: SE, standard error.
Statistically significant (P < 0.05).
Fig. 7Synchrony. A Weekly Aedes aegypti egg counts. B Landsat 8-based land surface temperature. C Landsat 8-based NDVI. D Landsat 8-based EVI. E Sentinel 2-based NDVI. F Sentinel 2-based EVI. Dots are average synchrony estimates for a given distance and the gray area indicates the 95% confidence intervals of the synchrony. For reference, the global (or average) synchrony (r) is presented as a black dashed line, and the black solid line indicates when synchrony is equal to zero. Filled circles represent synchrony estimates that are significantly different from the average synchrony (P <0.05), while empty circles are not statistically different from the average synchrony estimate (P > 0 .05)
Model selection for the best spatial Gaussian generalized additive model explaining the median number of Aedes aegypti eggs per ovitrap at Puntarenas City, Costa Rica
| Variables | AIC |
|---|---|
| Full model: LST, LNDVI, LEVI, SNDVI, SEVI, LSTSD, LNDVISD, LEVISD, SNDVISD, SEVISD, LSTK, LNDVIK, LEVIK, SNDVIK, SEVIK | 566.91 |
| LST, LNDVI, LEVI, SNDVI, SEVI, LSTSD, LNDVISD, LEVISD, SNDVISD, SEVISD, LSTK, LNDVIK, LEVIK, SEVIK | 564.91 |
| LST, LEVI, SNDVI, SEVI, LSTSD, LNDVISD, LEVISD, SNDVISD, SEVISD, LSTK, LNDVIK, LEVIK, SEVIK | 562.91 |
| LST, LEVI, SNDVI, SEVI, LSTSD, LNDVISD, LEVISD, SNDVISD, SEVISD, LSTK, LNDVIK, LEVIK | 560.92 |
| LST, SNDVI, SEVI, LSTSD, LNDVISD, LEVISD, SNDVISD, SEVISD, LSTK, LNDVIK, LEVIK | 558.95 |
| LST, SNDVI, SEVI, LSTSD, LNDVISD, SNDVISD, SEVISD, LSTK, LNDVIK, LEVIK | 557.00 |
| LST, SNDVI, SEVI, LSTSD, LNDVISD, SEVISD, LSTK, LNDVIK, LEVIK | 555.10 |
| LST, SEVI, LSTSD, LNDVISD, SEVISD, LSTK, LNDVIK, LEVIK | 553.29 |
| LST, SEVI, LSTSD, SEVISD, LSTK, LNDVIK, LEVIK | 551.47 |
| LST, SEVI, LSTSD, LSTK, LNDVIK, LEVIK | 549.75 |
| LST, LSTSD, LSTK, LNDVIK, LEVIK | 547.93 |
| LST, LSTSD, LNDVIK, LEVIK | 546.31 |
| LST, LSTSD, LEVIK | 545.22 |
Notes: AIC indicates the Akaike information criterion for each model. AIC is minimized by the best model, which is presented in bold. The following covariates were considered: Landsat 8-based temperature (LST); Landsat 8-based NDVI (LNDVI); Landsat 8-based EVI (LEVI); Sentinel 2-based NDVI (SNDVI); Sentinel 2-based EVI (SEVI); and also the SD and kurtosis of each of those variables which are indicated by adding, respectively, SD or K as suffix to the environmental variables.
Parameter estimates for the best spatial Gaussian generalized additive model explaining the mean number of Aedes aegypti eggs per ovitrap at Puntarenas City, Costa Rica
| Parameter | Estimate | SE | ||
|---|---|---|---|---|
| Intercept | 12.290 | 1.869 | 6.575 | 5.22E-09 |
| Kurtosis of Landsat 8-based EVI (KEVI) | 2.181 | 0.185 | 11.776 | 2.00E-16 |
| Moranʼs I | 0.031 | 0.193 | ||
| Approximate significance of smoothed terms | ||||
| Smoothed function | Estimate | Residual | ||
| 1.866 | 2.354 | 4.323 | 0.0141 | |
| 0.642 | 0.642 | 65.598 | 4.54E-09 | |
Abbreviation: df, degrees of freedom.
Statistically significant (P < 0.05).
Fig. 8Fitted surface from the best Gaussian generalized additive model explaining the mean number of Aedes aegypti egg counts per ovitrap as a function of Landsat 8-based EVI kurtosis and land surface temperature. Contour lines indicate the expected mean number of Ae. aegypti eggs per ovitrap. Contour lines were drawn in increasing values of 10 and observed values are represented by circles proportional to the mean number of eggs per ovitrap