Dayton J Vogel1, Tina M Nenoff2, Jessica M Rimsza3. 1. Computational Materials and Data Science Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States. 2. Material, Physical and Chemical Sciences, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States. 3. Geochemistry Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States.
Abstract
Barely porous organic cages (POCs) successfully separate hydrogen isotopes (H2/D2) at temperatures below 100 K. Identifying the mechanisms that control the separation process is key to the design of next-generation hydrogen separation materials. Here, ab initio molecular dynamics (AIMD) simulations are used to elucidate the mechanisms that control D2 and H2 separation in barely POCs with varying functionalization. The temperature and pore size dependence were identified, including the selective capture of D2 in three different CC3 structures (RCC3, CC3-S, and 6ET-RCC3). The temperature versus capture trend was reversed for the 6ET-RCC3 structure, identifying that the D2 and H2 escape mechanisms are unique in highly functionalized systems. Analysis of calculated isotope velocities identified effective pore sizes that extend beyond the pore opening distances, resulting in increased capture in minimally functionalized CC3-S and RCC3. In a highly functionalized POC, 6ET-RCC3, higher velocities of the H isotopes were calculated moving through the restricted pore compared to the rest of the system, identifying a unique molecular behavior in the barely nanoporous pore openings. By using AIMD, mechanisms of H2 and D2 separation were identified, allowing for the targeted design of future novel materials for hydrogen isotope separation.
Barely porous organic cages (POCs) successfully separate hydrogen isotopes (H2/D2) at temperatures below 100 K. Identifying the mechanisms that control the separation process is key to the design of next-generation hydrogen separation materials. Here, ab initio molecular dynamics (AIMD) simulations are used to elucidate the mechanisms that control D2 and H2 separation in barely POCs with varying functionalization. The temperature and pore size dependence were identified, including the selective capture of D2 in three different CC3 structures (RCC3, CC3-S, and 6ET-RCC3). The temperature versus capture trend was reversed for the 6ET-RCC3 structure, identifying that the D2 and H2 escape mechanisms are unique in highly functionalized systems. Analysis of calculated isotope velocities identified effective pore sizes that extend beyond the pore opening distances, resulting in increased capture in minimally functionalized CC3-S and RCC3. In a highly functionalized POC, 6ET-RCC3, higher velocities of the H isotopes were calculated moving through the restricted pore compared to the rest of the system, identifying a unique molecular behavior in the barely nanoporous pore openings. By using AIMD, mechanisms of H2 and D2 separation were identified, allowing for the targeted design of future novel materials for hydrogen isotope separation.
Hydrogen
isotope species (H2/D2) are needed
for multiple applications across science and industry, including proton
nuclear magnetic resonance,[1] neutron moderators
in nuclear reactors,[2] isotope tracing,[3−5] and neutron scattering techniques.[6] A
wide variety of porous materials have been explored for H2 separation from mixed gas streams for hydrogen storage[7−10] but H2/D2 separation continues to be a challenge.
The nearly identical chemical nature of hydrogen isotopes provides
unique challenges in separation, which cannot be achieved through
traditional methods such as molecular sieving.[11] Traditionally, hydrogen isotope separation has been achieved
through electrolysis of heavy water extracted through the Girdler-sulfide
process[12] or by cryogenic distillation
at 24 K.[13] These processes are energy intensive
and are currently driven primarily via precious metal
(Pd and Pt)-based adsorption systems.[14−16]Recently, isotopic
separation has been approached using nanoporous
materials for size or adsorption sieving.[17] These separation processes include kinetic quantum sieving (KQS),[18] which is derived from quantum interactions during
the diffusion of gas through pores in the material, and chemical affinity
quantum sieving (CAQS),[19] which is dependent
on quantum effects resulting in enhanced chemical adsorption. Previous
work investigating the use of porous materials based on KQS and CAQS
for hydrogen isotope separations includes barely nanoporous carbons,[20] zeolites,[21] metal–organic
frameworks,[22] and graphene materials.[23]Among these nanoporous materials, barely
nanoporous carbons composed
of porous organic cages (POCs) have shown to have a combination of
both high D2 selectivity and uptake.[20] Specifically, the CC3 series of POCs synthesized in a cocrystal
provide the best combination of high uptake and selectivity at temperatures
between 30 and 77 K.[20] The porous organic
chiral imine cage, CC3, is formed by cycloimination of 1,3,5-triformylbenzene
and (1R,2R)-1,2-diaminocyclohexane.[24] Further functionalization of the parent CC3
cage results in the modification of the cage pore to create the reduced
CC3 cage (RCC3) and ethylidene-functionalized CC3 cage (6ET-RCC3).[20,25] The phenomenon of KQS becomes relevant when the de Broglie wavelength,
λ = h/mvr, of a
gas molecule is comparable in size to the pore diameter of a material,
resulting in a reduced transversal motion of the molecule.[18,20] The KQS effect that occurs in POCs and other nanoporous materials
is temperature-dependent and localized to the individual small molecule
of interest. However, when applying flexible framework materials,
the effects of temperature and flexibility are coupled. Lower temperatures
induce a lower motion of the POC and result in smaller pore window
sizes in functionalized 6ET-RCC3. Due to the smaller pore windows
at low temperatures, the KQS effect is amplified. Not only is KQS
more effective at low temperatures for isotopic pairs but also the
decreased motion of the separation material at low temperatures further
restricts light isotope motion through the reduced pore window size.
The higher adsorption temperature range for CC3 POCs compared to current
cryogenic distillation methods results in lower energy consumption
and expense to achieve isotopic purity of D2 from an H2/D2 stream.[23] Experimentally,
the results demonstrate that in a temperature range of 30–77
K, there was a dependence of KQS on the temperature, and at lower
temperatures, the heavier D2 is retained in larger quantities.
The effect of KQS is also enhanced in CC3 variants through the choice
of functionalization. The standard pore size of CC3 is ∼4.5
Å compared to ethylidene-functionalized 6ET-RCC3, which has a
pore diameter of ∼1.9 Å.[20] The
combination of temperature and choice of functionalization provides
increased separation and selectivity of hydrogen isotopes and highlights
the tunability of POCs for chemical separations.While hydrogen
isotope separation has been identified as the process
for high D2 selectivity and uptake, the fundamental mechanisms
of atomic interactions have not been identified. Atomic level mechanisms
in porous materials have been successfully investigated through the
use of high-performance computing and ab initio molecular
dynamics (AIMD) simulations.[26−28] AIMD simulations combine classical
MD simulations with density functional theory (DFT) electronic structure
calculations at each time step. The use of AIMD also provides the
opportunity to directly monitor the temperature-based effects of hydrogen
isotopes in CC3 POCs. Previous calculations have utilized grand canonical
Monte Carlo (GCMC) and classical MD methods to identify hydrogen isotope
equilibrium distributions and path integral MD using a single H2 or D2 molecule.[20] To
gain a deeper insight into mechanisms of hydrogen isotope separation,
AIMD is applied to study the specific mechanisms of hydrogen isotope
interactions with three CC3 POCs: RCC3, CC3-S, and 6ET-RCC3. The evaluation
of multiple CC3 POCs allows for the identification of the effect of
temperature and functionalization on hydrogen isotope motion.By studying the unknown temperature-dependent structure–property
relationships that exist in a series of CC3 barely nanoporous carbons,[20] the design of new hydrogen isotope separation
materials can be achieved. Selective separation of hydrogen isotopes
in nanoporous sieves via size and weight will enable
the design of future low-cost and energy-efficient purification processes.
Computational Methods
Three unique CC3 POC structures
(RCC3, CC3-S, and 6ET-RCC3) were
investigated using DFT as implemented in the Vienna ab initio simulation package (VASP) code[29,30] in a plane
wave basis set[31,32] with projector-augmented wave
potentials and a closed shell electronic structure.[33,34] A 600 eV cutoff energy was used and converged to a force accuracy
of 1 × 10–4 eV/atom at the gamma point for k-point sampling. A Gaussian smearing of 0.1 eV was used
for smearing of electron occupation. The generalized gradient approximation
exchange–correlation functional of Perdew, Burke, and Ernzerhof
was used along with the DFT-D2 method of Grimme as a van der Waals
correction.[35−37] Similar methods have been used in the evaluation
of porous metal–organic frameworks for investigation of structural,
adsorption, and optical properties.[38−41] Initial structures were taken
from published crystal structures,[20] and
snapshots of the three POC structures are presented in Figure and highlighted functionalization
is shown in the Supporting Information, Figure S1. DFT calculations have limitations when applied to isotopic
species, making ground-state energy comparisons difficult due to calculated
energies being dependent on the number of valence electrons within
the simulation. For H2 and D2 calculations,
one electronic structure calculation is needed to compute the electronic
energy of both isotopes. To distinguish H2 and D2 molecules, the D atom was modeled using the H potential and by modifying
the mass to 2 a.u. However, upon the introduction of temperature,
dynamic simulations of isotopes result in unique behaviors and allow
for identification of isotopic-dependent classical behavior.
Figure 1
Initial POC
geometric structures for (A) RCC3, (B) CC3-S, and (C)
6ET-RCC3. Atoms are represented by C (brown), N (blue), and H (white).
Initial POC
geometric structures for (A) RCC3, (B) CC3-S, and (C)
6ET-RCC3. Atoms are represented by C (brown), N (blue), and H (white).Following POC geometry optimization, a single H2 or
D2 molecule or a H2 and D2 pair was
placed in the center of the POC structure. A microcanonical ensemble
(NVE) was used to optimize the POC + gas system with
a 0.5 fs time step, and the velocities rescaled every 10 steps for
4000 steps using the same computational parameters as the initial
equilibration.[28] Using the structures calculated
during NVE, the AIMD trajectories continued with
canonical ensembles (NVT) performed to simulate the
model at the desired temperature and are used for data analysis. Four
different temperatures (30, 50, 77, and 100 K) were selected based
on the reported experimental conditions.[20] The NVT calculations utilized the Nose–Hoover[42,43] thermostat and were performed for 20,000 steps with a 0.5 fs time
step, resulting in a 10 ps trajectory for analysis. The AIMD trajectories
were calculated in triplicate by randomizing the D2 or
H2 molecule starting position within the POC pore cavity.
This resulted in 12 AIMD trajectories for both D2 and H2 with three trajectories at each temperature. All data presented
as an average value are taken over three AIMD trajectories for each
temperature, unless specified, and contain the standard error of the
values. During all AIMD trajectories, the simulation model was a single
POC placed in the center of the unit cell, and all atomic positions
were allowed to move without constraint. Trajectory analysis of pore
aperture was calculated via the cross product, , where S is the area of
the aperture defined by the vectors a and b. Vectors a and b are
defined by atomic coordinates of functional groups and visualized
in Figures S2 and S3. Determination of gas location relative to the
POC was calculated using the center of mass of both the POC and gas
molecule of interest. The distance between the gas and POC center
of mass was then compared to the distance required to be outside any
POC window, resulting in identification of an exit event.
Results and Discussion
To identify the fundamental mechanisms
of isotope selectivity in
barely nanoporous CC3 POCs, AIMD calculations of H2/D2 interaction and escape from the POCs are simulated to identify
spontaneous interactions between the molecule and the POC structure.
Additionally, a series of CC3 POCs with a range of functionalization
are used to identify the molecular selectivity due to changes in pore
size. The three POCs studied include CC3-S, RCC3, and 6ET-RCC3 which
have decreasing pore aperture due to functionalization and have been
previously identified as POCs of interest in hydrogen isotope separation.[20] Techniques for MD simulations are highly dependent
on sample size. For AIMD trajectories, the trajectory provides a highly
accurate chemical interaction sampling for gas species within the
POC structures. Of interest are the individual interaction events
that occur between the gas and POC, which are provided at a higher
level of chemical accuracy than classical MD trajectories. The AIMD
evaluation of hydrogen isotope separation focuses on diffusion and
pore exit or entrance mechanisms of H2 and D2 gas molecules to identify how POC functionalization influences isotope
motion. Results are presented in the order of increasing functionalization
POCs (CC3-S, RCC3, and 6ET-RCC3) for single hydrogen isotopes (H2/D2).
Energetic Response of POC
to Gas Loading
To identify relative structural stability
of gas concentration
within the pore volume, the functionalized 6ET-RCC3 POC was loaded
with three, five, seven, or ten H2 gas molecules, respectively,
and optimized. The optimized energies provide relative stability in
the POC framework as a function of gas concentration loaded into the
POC. An initial geometry optimization identifies an average energy
change in the simulation of −6.84 eV/H2 molecule
added to the POC (see data in Table S1).
To specify how the POC cage is structurally changing under various
gas loadings, comparison of the POC energies was performed. Following
the optimization of all gas-loaded POCs, the gas molecules are removed,
and a single point energy calculation was performed, Table .
Table 1
Energy
of the 6ET-RCC3 Cage as a Function
of Gas Loading and Relative Energy Changes as a Function of Gas Concentration
empty and gas-loaded 6ET-RCC3 cage energies
# of H2
total
energy
(eV)
dE vs empty (eV)
dE per H2 (eV)
0
–1307.27
3
–1307.28
–0.01
–0.004
5
–1307.15
0.12
0.024
7
–1307.09
0.18
0.026
10
–1307.02
0.25
0.025
Results indicate a
small energetic preference (−0.01 eV)
for 6ET-RCC3 containing up to three H2 molecules. However,
for higher gas loadings (3+ H2 molecules), the change in
energy increases, indicating a non-thermodynamically favored system.
Given the small volume within the 6ET-RCC3 pore and the difficulty
of H2 to move through the functionalized pore windows,
higher gas loadings are expected to be a non-equilibrium state of
the material. Therefore, the maximum number of gas molecules in the
6ET-RCC3 cage is less than three, and here, we have focused on 1–2
total gas molecules in the POC structures.
Selectivity
Dependence on the Functionalization
of CC3 POCs
The primary difference among the modeled POC
structures is the added chemical functionality to the parent CC3 POC.
The functionalization of POCs changes the size of the aperture, resulting
in a smaller pore window size for gas escape. Here, the parent POC
is the CC3-S model, while RCC3 and 6ET-RCC3 are the functionalized
POCs. The geometries that determine the aperture size are described
in detail in the Supporting Information, Figures S2 and S3. Calculation of the aperture area provides insights
into mechanisms of gas diffusion and selectivity as a function of
temperature. CC3-S and RCC3 POCs have no and minimal functionalization,
respectively. With minimal functionalization, the pore area is dependent
on the flexibility of the POC framework. The calculated pore areas
for CC3-S and RCC3, Figure , show a linear dependence between the area and temperature
with the area decreasing with increasing temperature.
Figure 2
Average pore aperture
areas calculated for CC3-S and RCC3 across
all temperatures (30, 50, 77, and 100 K) for D2 (blue)-
and H2 (red)-containing models.
Average pore aperture
areas calculated for CC3-S and RCC3 across
all temperatures (30, 50, 77, and 100 K) for D2 (blue)-
and H2 (red)-containing models.As atomic motion increases at higher temperatures, a negative linear
trend in the pore area is expected. In the larger bulk material formed
from POC cages, the individual units organize themselves into a structured
packing. To investigate the role of POC motion, a semi-restricted
RCC3 model was simulated to approximate a covalently bonded POC structure
and test the hypothesis that the rotation of the POC cage due to weak
van der Waals bonding is a factor in controlling hydrogen isotope
separation, Supporting Information. The
semi-fixed RCC3 aperture areas showed a minimal decrease in response
to temperature, Figure S4, indicating restricted
pore motion in response to terminal fixing. The full detail of the
semi-fixed RCC3 simulations is presented in the Supporting Information. In the CC3-S parent POC, the pore
aperture area is relatively consistent across the calculated temperatures
ranging from 26.89 ± 0.01 Å2 at 30 K to 26.77
± 0.02 Å2 at 100 K across the D2 and
H2 models. The reduced RCC3 POC has a larger pore area
fluctuation at higher temperatures resulting in areas of 26.76 ±
0.01 Å2 at 30 K to 26.44 ± 0.05 Å2 at 100 K across D2 and H2 models. The non-functionalized
CC3-S shows slightly larger pore apertures compared to the reduced
RCC3, indicating a decreasing pore aperture with increasing POC functionalization.
In contrast to CC3-S and RCC3, the functionalized 6ET-RCC3 has a much
smaller aperture area, between 7.3 and 8.8 Å2, and
has an opposite temperature, Figure .
Figure 3
Visualization of a pore aperture in 6ET-RCC3 (left) with
the aperture
coordinates (green dots) and the calculated aperture plane (red triangle)
shown. The average pore aperture of 6ET-RCC3 with either D2 (blue) or H2 (red) in the pore at 30, 50, 77, and 100
K. Atom colors are consistent with Figure .
Visualization of a pore aperture in 6ET-RCC3 (left) with
the aperture
coordinates (green dots) and the calculated aperture plane (red triangle)
shown. The average pore aperture of 6ET-RCC3 with either D2 (blue) or H2 (red) in the pore at 30, 50, 77, and 100
K. Atom colors are consistent with Figure .The 6ET-RCC3 functionalization is unique in which the functional
groups protrude into the POC cavity and pore opening, resulting in
the greatly reduced aperture area. Since the functional group directly
determines the aperture area, the POC framework fluctuation is not
the determining factor in pore opening areas as seen in CC3-S and
RCC3. However, the functional group responds to temperature in the
same manner as the CC3-S and RCC3 frameworks. The increased motion
of the functional group due to temperature results in a larger pore
opening size, changing from 7.98 ± 0.47 to 8.23 ± 0.55 Å2 for D2 and 7.93 ± 0.42 to 8.27 ± 0.49
Å2 for H2. This area dependence on functionalization
and temperature is a key indicator of gaining size control into a
POC pore via the choice of temperature. Another key
feature of functionalization in 6ET-RCC3 is that not all apertures
are functionalized in the same manner. There are four pore apertures
and six functional groups, with two apertures having two methyl groups
and one H, while the other two apertures only have one methyl group
and two H. The visualization in Figure shows an aperture with two methyl groups and one H.
When comparing the larger and smaller apertures in 6ET-RCC3, the calculated
global averages along all AIMD trajectories are 7.64 ± 0.18 Å2 and 8.53 ± 0.19 Å2 for the smaller and
larger pore apertures, respectively. The averages of all four 6ET-RCC3
pores are plotted in Figure S7. In all
escape events along the calculated 6ET-RCC3 trajectories, the H2 or D2 isotope exited only through the larger apertures
with only one methyl group. This difference of ∼1 Å2 in aperture size demonstrates how a small a change in functionalization
results in the passage of H isotopes through the POC aperture. The
smaller size of the most functionalized pore apertures of 7.64 ±
0.18 Å2 indicates the potential pore opening barrier
for possible molecular isotope diffusion through a POC material.The pore aperture size has been hypothesized as the primary driver
of H isotope selectivity, and the temperature dependence of POC material
behavior and aperture area can be analyzed to understand H isotope
mobility along AIMD trajectories. An indicator of temperature-dependent
molecular selectivity is how frequently the H2 or D2 molecule exits the POC structure. Observation along all AIMD
trajectories of CC3-S, RCC3, and 6ET-RCC3 provides an average number
of exit or entrance events of H2 or D2 per trajectory
for all simulated temperatures, Figure .
Figure 4
Averaged number of exit or entrance events per AIMD trajectory
along calculated for CC3-S (red), RCC3 (blue), and 6ET-RCC3 (green)
at temperatures of 30, 50, 77, and 100 K.
Averaged number of exit or entrance events per AIMD trajectory
along calculated for CC3-S (red), RCC3 (blue), and 6ET-RCC3 (green)
at temperatures of 30, 50, 77, and 100 K.The observed exit and entrance events are averaged over three AIMD
trajectories at each temperature. The behavior of both D2 and H2 shows similar trends in the functionalized 6ET-RCC3.
As 6ET-RCC3 has a greatly reduced pore aperture, exit and entrance
events were less frequently observed on the calculation time scale.
Over a total of six AIMD trajectories, no D2 exit events
were observed at 30 and 50 K, while 1 and 2 events were observed for
77 and 100 K, respectively. Similarly, H2 exit and entrance
events in 6ET-RCC3 were minimal with 1 event occurring at 30, 50,
and 77 K each and 2 events at 100 K. All observed events were exit
events and did not include any re-entry of the H2 into
the POC.A unique observation is seen for POCs containing a
D2 molecule in the minimally functionalized RCC3. A higher
number of
total exit and entrance events occur at lower temperatures of 30 K
(6 events) and 50 K (9 events) compared to 77 K (2 events) and 100
K (1 event), Figure . As RCC3 and CC3-S have similar pore aperture areas, it would be
expected to see similar behaviors in the D2 ability to
move in and out of the POC. However, D2 was observed to
be consistent for temperatures of 30 K (5 events), 77 K (6 events),
and 100 K (5 events) with a single lower value at 50 K (1 event).
The functionalized pores, even minimally as in RCC3, are expected
to produce a small selectivity for the heavier D2 isotope
compared to that of H2. The ability of D2 to
enter and exit RCC3 also agrees with experimentally determined D2 uptake in the material.[20]The number of entrance and exit events that occurred for H2 in CC3-S and RCC3 exhibited inverted behavior compared to
D2. For RCC3, H2 has a low value of 2 exit and
entrance events at 50 K and 3 at 77 K, while low and higher temperatures
have 5 and 8 events for 30 and 100 K, respectively. For the nonfunctionalized
CC3-S, H2 was observed to have a higher number of entrance
and exit events at 30 K (4 events) and 50 K (7 events) compared to
the higher temperatures of 77 K (2 events) and 100 K (1 event). To
further examine D2 and H2 mobility in and out
of the studied POCs, the relative time percentages of the gases can
be analyzed, Figure .
Figure 5
Average time D2 (left) or H2 (right) spends
outside the POC pore for CC3-S (red), RCC3 (blue), and 6ET-RCC3 (green)
at temperatures of 30, 50, 77, and 100 K.
Average time D2 (left) or H2 (right) spends
outside the POC pore for CC3-S (red), RCC3 (blue), and 6ET-RCC3 (green)
at temperatures of 30, 50, 77, and 100 K.The time of an isotope molecule spent outside of the POC pore along
the AIMD trajectories provides information that has two dependencies.
Time spent outside the pore indicates the ability of the gas to exit
the pore. This first indication provides initial identification of
which isotope/POC/temperature environments may lead to idealized isotope
behavior. The second indication from the time outside the pore is
in conjunction with known exit and entrance events. Exit events are
observed along a trajectory and the time outside the pore is high,
which indicate that the gas does not re-enter the POC.The number
of exit and entrance events in the functionalized 6ET-RCC3
is low, Figure , and
the corresponding time spent outside the pore is also low for a temperature
of 30 and 50 K. However, for a temperature of 77 and 100 K, where
exit events were observed, the time outside the pore is above 40%
for both D2 and H2. The high values of time
outside the pore indicate that once gas has exited 6ET-RCC3, it does
not re-enter.The more accessible CC3-S and RCC3 POCs show that
gases spent more
time outside the pore on average compared to that of 6ET-RCC3. The
non-functionalized CC3-S has a low value of time outside the pore
for D2, indicating that the isotope prefers to stay inside
the pore at temperatures below 77 K. For H2 in CC3-S, the
isotope spends more than 60% of the trajectory outside of the pore
at temperatures of 50, 77, and 100 K. This agrees with the number
of exit and entrance events observed, highlighting that the lighter
H2 isotope moves more freely through the open POC. It also
indicates that D2 is more likely to move throughout RCC3
at low temperatures compared to H2. Interestingly, the
D2 molecule is observed to spend outside of the pore of
RCC3 at temperatures of 30, 50, and 77 K compared to CC3-S. In contrast,
H2 does not show a drastic change in time outside the pore
between CC3-S and RCC3 across any temperatures. Further investigation
of comparative behavior of D2 and H2 was calculated
for a single mixed gas trajectory in CC3-S, RCC3, and 6ET-RCC3. The
resulting trajectories containing both H2 and D2 resulted in the exit of one isotope molecule and no re-entry, Figure S9, agreeing with the DFT-calculated energies
for gas concentrations in the POC pore. Full discussion of the mixed
H2 and D2 trajectories is presented in the Supporting Information.
Gas Escape
Mechanisms for Single Gas Trajectories
For material prediction
and design, understanding the fundamental
mechanisms by which hydrogen isotopes enter and exit POCs during adsorption
processes is critical. Analyzing the calculated AIMD trajectories
provide atomistic information on isotope motion as the H2 and D2 gas molecules exit and enter the POCs. Snapshots
along two AIMD trajectories show both H2 and D2 exiting the CC3-S POC, Figure S12.The largest impact of KQS is exhibited at low temperatures for POCs
with functionalized pore windows with the smallest pore diameters.
To compare the temperature-dependent behavior of H2 and
D2 motion in functionalized POCs, velocities of isotope
gases have been organized as a function of temperature and gas location
in CC3-S, RCC3, and 6ET-RCC3. An example is shown for H2 in POC 6ET-RCC3 at 100 K in Figure .
Figure 6
Velocity of an H2 isotope in 6ET-RCC3 at 100
K plotted
as a function of distance from the POC center with localized regions
labeled as in pore, exiting, and outside pore.
Velocity of an H2 isotope in 6ET-RCC3 at 100
K plotted
as a function of distance from the POC center with localized regions
labeled as in pore, exiting, and outside pore.In the AIMD simulations, the gas position was divided into three
regions: (i) in the pore, (ii) exiting/entering the pore, and (iii)
outside the POC. The distances used to separate the distinct regions
have been visually highlighted in Figure with vertical red lines. The distinct regions
where a gas molecule is located within a POC directly effects the
gas-POC interaction energy and ability to be displaced.[44,45] To identify isotope behavior along the AIMD trajectories, the velocity
of the gas molecule was calculated and plotted as a function of distance
from the POC center with Figure , highlighting the H2 gas molecule sampled
along the 6ET-RCC3 at 100 K trajectory. The three distinct POC regions
were defined by distance from the POC center: 0–2.65 Å
in the pore, 2.65–5.75 Å approaching or exiting the POC,
and greater than 5.75 Å is outside the pore. In Figure , the thickness or shading
of the plotted velocity indicates the amount of time the gas sampled
each location. This is highlighted by the darker plot in the pore
and outside the POC. As the H2 isotope approaches the exit
a clear decrease in velocity is identified near 2.65 Å, Figure . The reduction in
velocity as the isotope reaches the pore aperture indicates the barrier
for the isotope to exit the POC. The region of approach/exit in Figure is light as the
H2 molecule exited the POC and never re-entered. If the
gas does not exit the pore, only distances less than 3 Å from
the POC center are sampled. The small pore aperture concentrates the
spatial sampling by the isotopic gases to inside and outside the POC
and does not allow the gases to stay within the pore opening.In the case of the open POCs of CC3-S and RCC3, the isotopes can
sample not only inside and outside of the POC but also the spatial
regions in the pore openings. To illustrate the difference of open
pore apertures compared to the functionalized 6ET-RCC3, the H2 path at 30 K in CC3-S POC has been visualized, Figure .
Figure 7
H2 distance
from the center of the POC (left) and velocity
plotted as a function of distance from the POC (right) in CC3-S at
30 K. Effective pore exits are represented by dashed horizontal and
vertical red lines for the same distance, 6 Å, in both plots.
The calculated distance of the average minimum of pore opening distance
from the center of the POC (left, green dashed line).
H2 distance
from the center of the POC (left) and velocity
plotted as a function of distance from the POC (right) in CC3-S at
30 K. Effective pore exits are represented by dashed horizontal and
vertical red lines for the same distance, 6 Å, in both plots.
The calculated distance of the average minimum of pore opening distance
from the center of the POC (left, green dashed line).Along one AIMD trajectory of H2 in CC3-S, the
H2 molecule samples all specified regions of the simulation
while having multiple exit and entrance events. The distance of the
H2 molecule as a function of distance from the POC center
is plotted in Figure (left). In the plot, a horizontal dashed red line indicates an effective
pore exit distance. The plotted red line is labeled an effective pore
exit as the calculated distances from the center of the POC to the
center of the pore opening range between 3.15 and 3.29 Å in CC3-S
(green horizontal line). The H2 molecule sample distances
from the pore between 3.3 and 6.0 Å correspond to molecule interaction
with the edges of the pore opening and N atoms at the corners of the
pore opening. The H2 and D2 molecules were also
observed to be able to move beyond the identified pore aperture plane,
∼6.25 Å, but still be retained by the POC. This behavior
was observed for both H2 and D2 molecules, indicating
an attractive interaction between the gas and POCs that is not dependent
on isotopic species. In correlation, the velocity as a function of
distance from the POC center, Figure (right), shows a similar velocity feature as observed
in 6ET-RCC3, Figure . As the H2 molecule nears the pore exit and is retained,
a large sampling of slow velocities is calculated. Just beyond the
effective pore exit, the velocity sampling is minimal and the plot
narrows. This feature of small velocity sampling is not distributed
across a long exit distance as seen in 6ET-RCC3, Figure , but is identifiable. The
ability of non-functionalized or minimally functionalized POCs to
retain H2 or D2 molecules inside the pore from
beyond the aperture plane enhances the uptake ability and capacity
of the material. Overall, the variation in the average isotope velocities
during exit and entrance events across multiple functionalized POCs
provides information to predict H2/D2 separation
in future isotope pairs.Calculated average isotope velocities for D2 (left)
and H2 (right) in CC3-S, RCC3, and 6ET-RCC3 at varying
positions of the simulation cell. Velocities are plotted for regions,
where the isotope is in the POC (Vin,
blue), outside the POC (Vout, red), and
when exiting or entering the POC (Vexit, green).For all POCs studied, the velocities
of both H2 and
D2 have been calculated for the specific regions of inside
the pore, Vin, exiting/entering the pore, Vexit, and outside the pore, Vout (Figure ). As described above in Figures and 7, the distances for each
region of the POC vary between the functionalized 6ET-RCC3 and CC3-S
and RCC3. The cutoff values used for 6ET-RCC3 POC were Vin < 3.5 Å, 3.5 Å < Vexit < 4.0 Å, and 4.0 Å < Vout. For the CC3-S and RCC3 POCs, the distance values
for the velocity regions were Vin <
5.5 Å, 5.5 Å < Vexit <
6.0 Å, and 6.0 Å < Vout.
For the non-functionalized CC3-S, the D2 velocities are
lowest at 77 K, while for H2, they are the highest velocities.
Overall, the H2 velocities were faster than D2 on average throughout all temperature trajectories. Since the CC3-S
POC has the largest pore opening, the lower mass of H2 will
allow it to move more freely through the system.
Figure 8
Calculated average isotope velocities for D2 (left)
and H2 (right) in CC3-S, RCC3, and 6ET-RCC3 at varying
positions of the simulation cell. Velocities are plotted for regions,
where the isotope is in the POC (Vin,
blue), outside the POC (Vout, red), and
when exiting or entering the POC (Vexit, green).
In the reduced
RCC3 POC, the trends in D2 and H2 velocities
are modified compared to CC3-S. For D2, the fastest velocities
are calculated to be 0.0127 ± 0.006
Å/fs at 50 K and reduce with increasing temperature. This trend
of faster velocities for D2 at lower temperatures matches
the reported experimental trend.[20] The
H2 molecule velocities show a linear trend with temperature,
with velocities increasing as the temperature increases, due to its
lower mass compared with D2. While both CC3-S and RCC3
have larger pore openings, the trends from calculated velocities show
unique differentiable behavior of D2 and H2.In the functionalized 6ET-RCC3, the velocities of D2 and H2 have similar behavior when inside the POC pore.
One feature that stands out is the number of exit events for both
D2 and H2 compared to the velocities inside
and outside of the POC. The values of D2Vexit were calculated to be 0.018 ± 0.007 Å/fs
compared to an average velocity of 0.010 ± 0.002 Å/fs for Vin and 0.013 ± 0.004 Å/fs for Vout. The H2 values of Vexit are 0.020 ± 0.005 Å/fs compared to 0.012
± 0.003 Å/fs for Vin and 0.017
± 0.006 Å/fs for Vout. The increased
velocity of both H2 and D2 isotopic molecules
when moving through the restricted pore apertures indicates a unique
molecular behavior when exiting the pore opening compared to being
inside or outside the POC. The expectation of KQS is that an isotopic
dependence exists between H isotopes, resulting in velocity differences
when moving through restricted volumes. As both D2 and
H2 were calculated to have increased velocities when exiting
the 6ET-RCC3 pore at 77 and 100 K, further trajectory calculations
would be required until sampling can occur for exit events of D2 and 30 and 50 K to provide the best comparison of exit velocities
between D2 and H2 as a function of temperature.
However, it is known that the classical treatment utilized along the
AIMD trajectories do not account for known zero-point energy corrections
and quantum effect utilized in more expensive calculation methods.
This leaves opportunity for improvement and further refinement of
results in future work. The results from the velocity analysis along
multiple trajectories and POCs showed differentiable behavior between
two hydrogen isotopes at varying temperature environments. The utilization
of AIMD presents data that provides chemically accurate calculations,
which fills the gap between classical MD and GCMC methods and restricted
path integral calculations.
Conclusions
A series of AIMD calculations were completed with focus to address
unknown temperature-dependent structure–property relationships,
which exist between a series of CC3 barely nanoporous carbons and
H2/D2 for design of new isotope separation materials.
The simulations identified POC material responses to temperature,
resulting in decreased pore apertures for RCC3 and CC3-S, whereas
the functionalized 6ET-RCC3 increased as temperature increased. This
identification highlights that a cage can be designed to have variable
pore sizes given a set temperature through material functionalization.
Analysis of D2 and H2 exit and entrance events
indicated that D2 had preferred ability to move through
RCC3 at low temperatures, while H2 had preferred ability
at high temperatures. This observation indicates that in a co-crystal
material that comprise multiple POCs, D2 can move through
minimally functionalized pores and interact with the isotopic-selective
functionalized POCs. Velocity analysis identified barrier distances,
which control H2 and D2 interactions with POCs.
In CC3-S and RCC3, observed interactions outside the pore aperture
plane help the POC retain the gases and increase uptake within the
material. For the functionalized 6ET-RCC3, the narrow pore aperture
results in a longer path through the pore to exit the POC, resulting
in identified experimental selectivity of D2. POC functionalization
resulted in isotopic velocity dependence, highlighting unique behavior
of H2 and D2 within the POCs and indicating
separation by using KQS with a dependence on temperature. In the functionalized
6ET-RCC3, both H2 and D2 were observed to have
higher velocities when exiting the POC pore compared to either inside
or outside the POC. The increased Vexit highlights unique molecular behavior in the spatially confined region
of the POC. The result of functionalization-dependent selectivity
can be further exploited and tuned for specific isotopic separation
and selectivity. Through the application of AIMD calculations, mechanisms
of H2 and D2 separation were identified, allowing
for targeted design of future novel materials for hydrogen isotope
separation.
Authors: P P Povinec; H Bokuniewicz; W C Burnett; J Cable; M Charette; J-F Comanducci; E A Kontar; W S Moore; J A Oberdorfer; J de Oliveira; R Peterson; T Stieglitz; M Taniguchi Journal: J Environ Radioact Date: 2008-08-03 Impact factor: 2.674
Authors: Igor V Stiopkin; Champika Weeraman; Piotr A Pieniazek; Fadel Y Shalhout; James L Skinner; Alexander V Benderskii Journal: Nature Date: 2011-06-08 Impact factor: 49.962
Authors: Chaowei Shi; Pascal Fricke; Lin Lin; Veniamin Chevelkov; Melanie Wegstroth; Karin Giller; Stefan Becker; Martin Thanbichler; Adam Lange Journal: Sci Adv Date: 2015-12-04 Impact factor: 14.136