| Literature DB >> 35283919 |
Yujie Shi1, Yuan Gao2, Yu Wang1, Danni Luo1, Sizhou Chen1, Zhaotang Ding1, Kai Fan1.
Abstract
Aboveground biomass (AGB) and leaf area index (LAI) are important indicators to measure crop growth and development. Rapid estimation of AGB and LAI is of great significance for monitoring crop growth and agricultural site-specific management decision-making. As a fast and non-destructive detection method, unmanned aerial vehicle (UAV)-based imaging technologies provide a new way for crop growth monitoring. This study is aimed at exploring the feasibility of estimating AGB and LAI of mung bean and red bean in tea plantations by using UAV multispectral image data. The spectral parameters with high correlation with growth parameters were selected using correlation analysis. It was found that the red and near-infrared bands were sensitive bands for LAI and AGB. In addition, this study compared the performance of five machine learning methods in estimating AGB and LAI. The results showed that the support vector machine (SVM) and backpropagation neural network (BPNN) models, which can simulate non-linear relationships, had higher accuracy in estimating AGB and LAI compared with simple linear regression (LR), stepwise multiple linear regression (SMLR), and partial least-squares regression (PLSR) models. Moreover, the SVM models were better than other models in terms of fitting, consistency, and estimation accuracy, which provides higher performance for AGB (red bean: R 2 = 0.811, root-mean-square error (RMSE) = 0.137 kg/m2, normalized RMSE (NRMSE) = 0.134; mung bean: R 2 = 0.751, RMSE = 0.078 kg/m2, NRMSE = 0.100) and LAI (red bean: R 2 = 0.649, RMSE = 0.36, NRMSE = 0.123; mung bean: R 2 = 0.706, RMSE = 0.225, NRMSE = 0.081) estimation. Therefore, the crop growth parameters can be estimated quickly and accurately using the models established by combining the crop spectral information obtained by the UAV multispectral system using the SVM method. The results of this study provide valuable practical guidelines for site-specific tea plantations and the improvement of their ecological and environmental benefits.Entities:
Keywords: UAV; above-ground biomass; leaf area index; machine learning; multispectral
Year: 2022 PMID: 35283919 PMCID: PMC8914207 DOI: 10.3389/fpls.2022.820585
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 5.753
FIGURE 1Research area. (A) The location of the experiment area; (B) experimental design.
Center wavelength and full width at half maximum (FWHM) bandwidth of each spectral band of the multispectral camera.
| Spectral band | Color | Sample | Center wavelength (nm) | Bandwidth FWHM (nm) |
| Blue | Blue |
| 450 | 25 |
| Green | Green |
| 555 | 25 |
| Red | Red |
| 660 | 25 |
| Red edge | Pink |
| 710 | 25 |
| Near infrared | Light purple |
| 840 | 25 |
| Near infrared | Purple |
| 940 | 25 |
FIGURE 2The ground-truth data for leaf area index (LAI) and aboveground biomass (AGB) of intercropping crops. (A) AGB of red bean and mung bean; (B) LAI of red bean and mung bean.
The spectral parameters used in this study.
| Spectral parameters | Calculation formula | References |
| B.450 | / | / |
| G.555 | / | / |
| R.660 | / | / |
| RE.710 | / | / |
| NIR.840 | / | / |
| NIR.940 | / | / |
| DVI | NIR.840-G.555 |
|
| NDVI | (NIR.840-R.660)/(NIR.840+R.660) |
|
| EVI | 2.5*(NIR.940-G.555)/(NIR.940+6*R.660-7.5B.450+1) |
|
| GNDVI | (NIR.940-G.555)/(NIR.940+G.555) |
|
| PPR | (G.555-B.450)/(G.555+B.450) |
|
| SIPI | (NIR.940-B.450)/(NIR.940-R.660) |
|
| RECI | NIR.840/RE.710-1 |
|
| Red edge NDVI | (NIR.940-RE.710)/(NIR.940+RE.710) |
|
| MERIS Terrestrial Chlorophyll Index (MTCI) | (NIR.840-RE.710)/(RE.710-R.660) |
|
| Modified chlorophyll absorption ratio index (MCARI) | [RE.710-R.660-0.2(RE.710-R.660)] *(RE.710/R.660) |
|
| Triangular vegetation index (TVI) | 0.5*[120*(NIR.840-G.555)-200*(R.660-G.555)] |
|
| Modified triangular vegetation index (MTVI2) | 1.5*[1.2*(NIR.840-G.555)-2.5*(R.660-G.555)]/[(12*NIR.880+1)2-[6*NIR.880-5*(R.660)2]-0.5]1/2 |
|
| Transformed chlorophyll absorption reflectance index (TCARI) | 3*[(RE710-R.660)-0.2*(RE.710-G.555) *(RE.710/G.555)] |
|
| Optimization of soil-adjusted vegetation index (OSAVI) | 1.16*(NIR.840-R.660)/(NIR.840+R.660+0.16) |
|
| Ratio vegetation index (RVI1) | NIR.840/R.660 |
|
| PPR/NDVI | PPR/NDVI |
|
| SIPI/RVI1 | SIPI/RVI1 |
|
| Modified non-linear vegetation index (MNLI) | 1.5*[(NIR.840)2-R.660)]/(NIR.842)2+R.660+0.5 |
|
| Soil-adjusted vegetation index (SAVI) | (NIR.840-R.660)/(NIR.840+R.660+0.5) |
|
| Modified simple ratio (MSR) | (NIR.840/R.660-1)/[(NIR.840/R.660)1/2+1] |
|
| Non-linear vegetation index (NLI) | [(NIR.840)2-R.660]/[(NIR.840)2+R.660] |
|
| Renormalized difference vegetation index (RDVI) | (NIR.840-R.660)/(NIR.840+R.660)1/2 |
|
FIGURE 3Correlation coefficients between spectral parameters and growth parameters (AGB and LAI) of intercropped crops. (A) AGB and LAI of red bean; (B) AGB and LAI of mung bean.
Performance indicators of the AGB and LAI estimation models established by the LR method using the optimal spectral parameters in the training set.
| Growth parameters | Intercropping crops | Optimal spectral parameters | Regression equation | Modeling accuracy | ||
|
| RMSE | NRMSE | ||||
| AGB (kg/m2) | Red bean | RVI1 | AGB = 0.059*RVI1+0.313 | 0.761 | 0.168 | 0.157 |
| Mung bean | RVI1 | AGB = 0.054*RVI1+1.55 | 0.626 | 0.088 | 0.113 | |
| LAI | Red bean | RECI | LAI = 0.616*RECI+0.355 | 0.634 | 0.376 | 0.129 |
| Mung bean | B.450 | LAI = –74.297*B.450+5.292 | 0.591 | 0.25 | 0.09 | |
FIGURE 4Relationship between the predicted and measured AGB and LAI obtained by using linear regression (LR) methods using the optimal spectral parameters in the test set. (A) AGB of red bean; (B) AGB of mung bean; (C) LAI of red bean; (D) LAI of mung bean. The red line is a 1:1 line.
Performance indicators of AGB and LAI estimation models established by the SMLR methods in the training set.
| Growth parameters | Intercropping crops | Regression equation | Modeling accuracy | ||
|
| RMSE | NRMSE | |||
| AGB (kg/m2) | Red bean | AGB = 0.155*RVI1–27.913*B.450–0.964*MSR–5.09*G.555 + 2.748 | 0.857 | 0.133 | 0.125 |
| Mung bean | AGB = 0.231703*RVI1–1.1639*MSR–15.0778*B.450–3.64563*R.660 + 1.7216 | 0.757 | 0.073 | 0.093 | |
| LAI | Red bean | LAI = 0.478338*RECI–53.7192*B.450 + 0.123683*RVI1–1.12239*MSR+ 4.65337 | 0.698 | 0.351 | 0.121 |
| Mung bean | LAI = –49.2931*B.450–3.39808*SIPI/RVI1 + 4.98799 | 0.672 | 0.227 | 0.081 | |
FIGURE 5Relationship between the predicted and measured AGB and LAI obtained by using the SMLR models within the test dataset. (A) AGB of red bean; (B) AGB of mung bean; (C) LAI of red bean; (D) LAI of mung bean. The red line is a 1:1 line.
FIGURE 6Boxplots for the coefficient of determination (R2), root-mean-square error (RMSE), and normalized RMSE (NRMSE) of the training results of SVM, PLSR, and BPNN models. (A) AGB of red bean and mung bean; (B) LAI of red bean and mung bean. The point plots indicate outliers encountered during the phase of the 100 different verifications repetitions and the black multiplication sign indicates the mean value.
FIGURE 7Box plots of coefficient of determination (R2), RMSE, and NRMSE of test results of SVM, PLSR, and BPNN. (A) AGB of red bean and mung bean; (B) LAI of red bean and mung bean. The point plots indicate outliers encountered during the phase of the 100 different test repetitions and the black multiplication sign indicates the mean value.
FIGURE 8The difference between the performance indicators for AGB estimation of red bean and mung bean using three machine learning methods within training and test datasets. (A) Red bean; (B) mung bean.
FIGURE 9The difference between the performance indicators for LAI estimation of red bean and mung bean using three machine learning methods within training and test datasets. (A) Red bean; (B) mung bean.