| Literature DB >> 35283827 |
Qinglin Zhang1, Qizhen Jia1, Wenying Gao2, Wenyan Zhang2.
Abstract
As a critical post-translational modification, ubiquitination is known to affect almost all the cellular processes including immunity, signaling pathways, cell death, cancer development, and viral infection by controlling protein stability. Deubiquitinases (DUBs) cleave ubiquitin from proteins and reverse the process of ubiquitination. Thus, DUBs play an important role in the deubiquitination process and serve as therapeutic targets for various diseases. DUBs are found in eukaryotes, bacteria, and viruses and influence various biological processes. Here, we summarize recent findings on the function of DUBs in modulating viral infection, the mechanism by which viral DUBs regulate host innate immune response, and highlight those DUBs that have recently been discovered as antiviral therapeutic targets.Entities:
Keywords: DUBs; PTM; antiviral innate immunity; ubiquitin; viral infection
Year: 2022 PMID: 35283827 PMCID: PMC8908266 DOI: 10.3389/fmicb.2022.839624
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
FIGURE 1Regulation of host-encoded DUBs in innate immune response. Toll-like receptors (TLRs) are a type of pattern-recognition receptors (PRRs) that recognize pathogen-associated molecular patterns (PAMPs) and subsequently change their conformation to initiate downstream signaling. TLRs are located on the cell membrane, phagosome membrane, endosome, and endoplasmic reticulum (TLRs on endosomes and endoplasmic reticulum are not shown). TLRs can activate the expression of NF-κB or IRF3 and subsequently induce the expression of inflammatory cytokines or IFN-β in the nucleus. Activated TLRs recruit adaptor proteins, including TIRAP, MyD88, TRAM, and TRIF. First, the adaptors interact with IRAKs and TRAF6 and then activate NF-κB through the TAK1-IKK-IκB axis. Second, the adaptors mediate the expression of IRF3 via TRIF-TRAF3-TBK1 signaling. In addition, another PRR, RIG-I, which belongs to the RIG-I-like receptors (RLRs) family, is responsible for sensing RNA of pathogens. It interacts with MAVS, which further induces both NF-κB and IRF3. Stimulator of interferon genes (STING), located on the endoplasmic reticulum senses cytoplasmic DNA and regulates IFN signaling by activating TBK1 and IRF3. IFN-β induces the phosphorylation of JAK and expression of interferon-stimulated genes (ISGs) by activating the downstream JAK-STAT pathway. Host-encoded DUBs interact with the above signaling molecules to modulate the innate immune response. Their deubiquitinating function and substrates are shown in the schematic.
Host-encoded DUBs and the targeted viruses, proteins, or genes.
| Host-encoded DUBs | Targeted viruses or genes, proteins | The mechanism | References |
| USP1/USP12/USP46 | Human papillomavirus (HPV) E1 helicase | Unwinding DNA and enhancing viral DNA replication |
|
| USP14 | Murine norovirus 1 (MNV-1) VPg gene | Non-structural gene |
|
| USP 7 | HIV-1 Tat | Promoting viral production |
|
| Herpes simplex virus type 1 (HSV-1) ICP0 (Vmw110) | Non-specific activator of gene expression |
| |
| Epstein-Barr virus (EBV) EBNA1 | Initiating EBV latent genome replication |
| |
| Kaposi’s sarcoma herpesvirus (KSHV) LANA | Working in latent viral replication |
| |
| Merkel cell polyomavirus (MCPyV) | Working in viral replication |
| |
| red-spotted grouper nervous necrosis virus (RGNNV) | Strongly represses the activation of the IFN-I promoter |
| |
| TRIM27 | Enhances the stabilization of the E3 ligase TRIM27 |
| |
| USP15 | HIV Nef | Necessary for AIDS pathogenicity |
|
| HIV Gag | HIV structural protein | ||
| USP11 | Influenza A virus RNA | A component of viral RNA replication complex |
|
| OTULIN | PRRSV Nsp11 | OTULIN is recruited by PRRSV Nsp11 and removes linear ubiquitination targeting NEMO |
|
| USP19, DUBA | TRAF3 | Removes K63-linked ubiquitination of TRAF3 | |
| USP25 | TRAF3 | The enhancement of TRAF3 degradation |
|
| CYLD; USP18 and USP20 | STING | The cleavage of K48-linked ubiquitination of STING | |
| USP13/49 | STING | Deconjugates K27- and K63-linked polyubiquitin chains of STING | |
| USP17 | RIG-I | Increases the ubiquitination level of RIG-I |
|
| USP3/21/19 | RIG-I | Removes K63-linked polyubiquitin chains of RIG-I | |
| USP4 | RIG-I | Interacts and removes K48-linked polyubiquitin chains of RIG-I |
|
| USP15 | TRIM25/RIG-I | Enhanced the TRIM25- and RIG-I-Dependent production of IFN-I and suppressed RNA virus replication | |
| USP1 | TBK1 | Reduces K48-linked ubiquitination of TBK1 and stabilizes it |
|
| USP2a | STAT | Reduce the K48-linked ubiquitination and degradation of pY701-STAT1 |
|
| USP39 | STAT | Downregulates STAT K6-linked ubiquitination, thus stabilizing STAT |
|
| USP2b | TBK1 | Inhibits the kinase activity of TBK1 |
|
| USP27X | cGAS-STING | Removes cGAS K48-linked ubiquitination |
|
| DUBA | TRAF3 | Removes K63-linked ubiquitination of TRAF3 |
|
| OTUB1, OTUB2 | TRAF3 and TRAF6 | Deubiquitinating TRAF3 and TRAF6 |
|
| OTUD1 | Smurf1 | Upregulate the level of protein Smurf1 |
|
| OTUD3, OTUD4 | MAVS | Deubiquitinates and stabilizes MAVS | |
| OTUD5 | STING | Cleaving STING K48, enhancing STING stability |
|
Virus-encoded DUBs and the targeted proteins or genes.
| Virus-encoded DUBs | Targeted protein(s) or gene(s) | Mechanism | References |
| Adenovirus protease Adenain | N/A | Deubiquitinates a number of cellular proteins |
|
| SARS PLP | ISG15 | Cleave replicase substrates; cleave K48-linked polyUb chains of ISG15 | |
| TRAF3, TRAF6 | Inhibits the production of IFNs and pro-inflammatory cytokines |
| |
| HcoV-NL63 PLP2 | N/A | Antagonizes the induction of IFN-I independent of protease and DUB activity | |
| HSV-1 UL36 | Proliferating cell nuclear antigen (PCNA) | Blocks the polymerase-η-mediated DNA damage-response translation synthesis (TLS) pathway |
|
| TRAF3, | Inhibits IFN-I production or counteracts the IFN-I-mediated signaling pathway | ||
| IκBα | The inactivation of the NF-κB pathway and the inhibition of IFN-β production |
| |
| MDV UL36 | N/A | Contributes to malignant outgrowths |
|
| HCMV UL48 | N/A | Facilitates production of infectious virus | |
| TRAF6, TRAF3, IRAK1, IRF7, STING | Promotes oncogenesis by inhibiting innate immunity of the host |
| |
| RIP1 | Inhibits TNFα-induced NF-κB activation |
| |
| EBV BPLF1 | EBV ribonucleotide reductase (RR) | Interacts with, deubiquitinates, and influences the activity of the EBV RR |
|
| IκBα, TRAF6, NEMO | Suppresses TLR-mediated activation of NF-κB | ||
| PCNA | Attenuates polymerase η recruitment to DNA damage sites |
| |
| CCHFV OTU | NP | Associating with viral genomic RNA to form RNP complexes, initiate replication or transcription |
|
| KSHV ORF64 | RIG-I | Inhibition of RIG-I-mediated signaling |
|
| Arteri- and nairovirus DUBs | RIG-I | Control innate immune signaling |
|
| TYMV PRO domain | 66K RdRp | Ensures the replication of viral RNA |
|
| HEV PCP | RIG-I, TBK1 | Reduces IFN production |
|
| FMDV Ppro | RIG-1, TBK1, TRAF3, TRAF6 | Blocks the IFN-β promoter |
|
| PEDV PLP2 | IRF3 | Negatively regulates type I interferon pathway |
|
| TGEV PL1 | RIG-I, STING | Antagonizes production of IFN- β |
|
| PRRSV nsp2 | IκBα | Antagonizes the type I interferon induction by interfering with the NF-kappaB signaling pathway |
|
| MHV-A59 PLP2 | IRF3 | Blocks IRF3-, TBK1- and CARDIF-mediated IFN-β reporter activity |
N/A represents not applicable.