Literature DB >> 35283585

Comparative plastome data analysis of Dendrosicyos socotranus and Corallocarpus boehmii.

Mohammad Ajmal Ali1, Khalid Mashay Al-Anazi2, Fahad Al-Hemaid1, Waquar Akhtar Ansari3, Joongku Lee4.   

Abstract

Comparison of the Dendrosicyos socotranus and Corallocarpus boehmii (tribe Coniandreae, family Cucurbitaceae) plastome data was of interest. Data on RNA, tRNA, GC%, plastome size, CDS and pseudogene were tabulated for the two species. The total length of 1,57,380 bp and 1,58,744 bp which includes LSC, SSC, IRa, and IRb, while their GC content was 37.1% and 37% respectively. The variation in the length of genes e.g. ndhD, ndhI, rpl22, rpoC2, rps16, rps19, rps8, ycf1and ycf2 noted. Data help to document the genetic differences between usual (climber) with those of tree cucurbits.
© 2021 Biomedical Informatics.

Entities:  

Keywords:  Coniandreae; Corallocarpus boehmii; Cucurbitaceae; Dendrosicyos socotrana; Plastome

Year:  2021        PMID： 35283585      PMCID： PMC8882076          DOI： 10.6026/97320630017662

Source DB:  PubMed          Journal:  Bioinformation        ISSN： 0973-2063


  10 in total

1.  A multi-locus chloroplast phylogeny for the Cucurbitaceae and its implications for character evolution and classification.

Authors:  Alexander Kocyan; Li-Bing Zhang; Hanno Schaefer; Susanne S Renner
Journal:  Mol Phylogenet Evol       Date:  2007-01-08       Impact factor: 4.286

Review 2.  DNA sequencing at 40: past, present and future.

Authors:  Jay Shendure; Shankar Balasubramanian; George M Church; Walter Gilbert; Jane Rogers; Jeffery A Schloss; Robert H Waterston
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

3.  The products of YCF1 and YLL015w (BPT1) cooperate for the ATP-dependent vacuolar transport of unconjugated bilirubin in Saccharomyces cerevisiae.

Authors:  S Petrovic; L Pascolo; R Gallo; F Cupelli; J D Ostrow; A Goffeau; C Tiribelli; C V Bruschi
Journal:  Yeast       Date:  2000-04       Impact factor: 3.239

4.  The yeast cadmium factor protein (YCF1) is a vacuolar glutathione S-conjugate pump.

Authors:  Z S Li; M Szczypka; Y P Lu; D J Thiele; P A Rea
Journal:  J Biol Chem       Date:  1996-03-15       Impact factor: 5.157

5.  ycf1, the most promising plastid DNA barcode of land plants.

Authors:  Wenpan Dong; Chao Xu; Changhao Li; Jiahui Sun; Yunjuan Zuo; Shuo Shi; Tao Cheng; Junjie Guo; Shiliang Zhou
Journal:  Sci Rep       Date:  2015-02-12       Impact factor: 4.379

Review 6.  Chloroplast genomes: diversity, evolution, and applications in genetic engineering.

Authors:  Henry Daniell; Choun-Sea Lin; Ming Yu; Wan-Jung Chang
Journal:  Genome Biol       Date:  2016-06-23       Impact factor: 13.583

Review 7.  Evolution of plant genome architecture.

Authors:  Jonathan F Wendel; Scott A Jackson; Blake C Meyers; Rod A Wing
Journal:  Genome Biol       Date:  2016-03-01       Impact factor: 13.583

8.  GeSeq - versatile and accurate annotation of organelle genomes.

Authors:  Michael Tillich; Pascal Lehwark; Tommaso Pellizzer; Elena S Ulbricht-Jones; Axel Fischer; Ralph Bock; Stephan Greiner
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

Review 9.  The Sequenced Angiosperm Genomes and Genome Databases.

Authors:  Fei Chen; Wei Dong; Jiawei Zhang; Xinyue Guo; Junhao Chen; Zhengjia Wang; Zhenguo Lin; Haibao Tang; Liangsheng Zhang
Journal:  Front Plant Sci       Date:  2018-04-13       Impact factor: 5.753

10.  Plastome of Saraca asoca (Detarioideae, Fabaceae): Annotation, comparison among subfamily and molecular typing.

Authors:  Mohammad Ajmal Ali; Tapan Kumar Pan; Arun Bahadur Gurung; Mohammad Abul Farah; Fahad Al-Hemaid; Khalid Mashay Alanazi; Meena Elangbam; Joongku Lee; Shankar Kumar Pandey; M Oliur Rahman; Soo-Yong Kim
Journal:  Saudi J Biol Sci       Date:  2020-12-11       Impact factor: 4.219
  10 in total

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