Literature DB >> 35282568

De novo Design of SARS-CoV-2 Main Protease Inhibitors.

Christian Fischer1, Nynke A Vepřek1,2, Zisis Peitsinis1, Klaus-Peter Rühmann1, Chao Yang1, Jessica N Spradlin3, Dustin Dovala4, Daniel K Nomura3, Yingkai Zhang1, Dirk Trauner1.   

Abstract

The COVID-19 pandemic prompted many scientists to investigate remedies against SARS-CoV-2 and related viruses that are likely to appear in the future. As the main protease of the virus, MPro, is highly conserved among coronaviruses, it has emerged as a prime target for developing inhibitors. Using a combination of virtual screening and molecular modeling, we identified small molecules that were easily accessible and could be quickly diversified. Biochemical assays confirmed a class of pyridones as low micromolar non-covalent inhibitors of the viral main protease.

Entities:  

Keywords:  Coronavirus; Molecular Modeling; SARS-CoV-2; Small-Molecule Inhibitor; Viral Main Protease

Year:  2021        PMID: 35282568      PMCID: PMC8916680          DOI: 10.1055/a-1582-0243

Source DB:  PubMed          Journal:  Synlett        ISSN: 0936-5214            Impact factor:   2.170


  24 in total

Review 1.  Approved Antiviral Drugs over the Past 50 Years.

Authors:  Erik De Clercq; Guangdi Li
Journal:  Clin Microbiol Rev       Date:  2016-07       Impact factor: 26.132

Review 2.  SARS-CoV-2 vaccines in development.

Authors:  Florian Krammer
Journal:  Nature       Date:  2020-09-23       Impact factor: 49.962

3.  Structure of Mpro from SARS-CoV-2 and discovery of its inhibitors.

Authors:  Zhenming Jin; Xiaoyu Du; Yechun Xu; Yongqiang Deng; Meiqin Liu; Yao Zhao; Bing Zhang; Xiaofeng Li; Leike Zhang; Chao Peng; Yinkai Duan; Jing Yu; Lin Wang; Kailin Yang; Fengjiang Liu; Rendi Jiang; Xinglou Yang; Tian You; Xiaoce Liu; Xiuna Yang; Fang Bai; Hong Liu; Xiang Liu; Luke W Guddat; Wenqing Xu; Gengfu Xiao; Chengfeng Qin; Zhengli Shi; Hualiang Jiang; Zihe Rao; Haitao Yang
Journal:  Nature       Date:  2020-04-09       Impact factor: 49.962

Review 4.  Targeting SARS-CoV-2 Proteases and Polymerase for COVID-19 Treatment: State of the Art and Future Opportunities.

Authors:  Rolando Cannalire; Carmen Cerchia; Andrea R Beccari; Francesco Saverio Di Leva; Vincenzo Summa
Journal:  J Med Chem       Date:  2020-11-13       Impact factor: 7.446

5.  Crystal Structure of SARS-CoV-2 Main Protease in Complex with the Non-Covalent Inhibitor ML188.

Authors:  Gordon J Lockbaum; Archie C Reyes; Jeong Min Lee; Ronak Tilvawala; Ellen A Nalivaika; Akbar Ali; Nese Kurt Yilmaz; Paul R Thompson; Celia A Schiffer
Journal:  Viruses       Date:  2021-01-25       Impact factor: 5.048

Review 6.  Structural Basis of Potential Inhibitors Targeting SARS-CoV-2 Main Protease.

Authors:  Hylemariam Mihiretie Mengist; Tebelay Dilnessa; Tengchuan Jin
Journal:  Front Chem       Date:  2021-03-12       Impact factor: 5.221

Review 7.  SARS-CoV-2 variants, spike mutations and immune escape.

Authors:  William T Harvey; Alessandro M Carabelli; Ben Jackson; Ravindra K Gupta; Emma C Thomson; Ewan M Harrison; Catherine Ludden; Richard Reeve; Andrew Rambaut; Sharon J Peacock; David L Robertson
Journal:  Nat Rev Microbiol       Date:  2021-06-01       Impact factor: 78.297

8.  Screening a Library of FDA-Approved and Bioactive Compounds for Antiviral Activity against SARS-CoV-2.

Authors:  Scott B Biering; Erik Van Dis; Eddie Wehri; Livia H Yamashiro; Xammy Nguyenla; Claire Dugast-Darzacq; Thomas G W Graham; Julien R Stroumza; Guillaume R Golovkine; Allison W Roberts; Daniel M Fines; Jessica N Spradlin; Carl C Ward; Teena Bajaj; Dustin Dovala; Ursula Schulze-Gamen; Ruchika Bajaj; Douglas M Fox; Melanie Ott; Niren Murthy; Daniel K Nomura; Julia Schaletzky; Sarah A Stanley
Journal:  ACS Infect Dis       Date:  2021-06-15       Impact factor: 5.084

Review 9.  From SARS to MERS: crystallographic studies on coronaviral proteases enable antiviral drug design.

Authors:  Rolf Hilgenfeld
Journal:  FEBS J       Date:  2014-08-11       Impact factor: 5.542

10.  Drug-induced phospholipidosis confounds drug repurposing for SARS-CoV-2.

Authors:  Tia A Tummino; Veronica V Rezelj; Benoit Fischer; Audrey Fischer; Matthew J O'Meara; Blandine Monel; Thomas Vallet; Kris M White; Ziyang Zhang; Assaf Alon; Heiko Schadt; Henry R O'Donnell; Jiankun Lyu; Romel Rosales; Briana L McGovern; Raveen Rathnasinghe; Sonia Jangra; Michael Schotsaert; Jean-René Galarneau; Nevan J Krogan; Laszlo Urban; Kevan M Shokat; Andrew C Kruse; Adolfo García-Sastre; Olivier Schwartz; Francesca Moretti; Marco Vignuzzi; Francois Pognan; Brian K Shoichet
Journal:  Science       Date:  2021-06-22       Impact factor: 47.728

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  2 in total

Review 1.  Delta Machine Learning to Improve Scoring-Ranking-Screening Performances of Protein-Ligand Scoring Functions.

Authors:  Chao Yang; Yingkai Zhang
Journal:  J Chem Inf Model       Date:  2022-05-17       Impact factor: 6.162

2.  Comprehensive fitness landscape of SARS-CoV-2 Mpro reveals insights into viral resistance mechanisms.

Authors:  Julia M Flynn; Neha Samant; Gily Schneider-Nachum; David T Barkan; Nese Kurt Yilmaz; Celia A Schiffer; Stephanie A Moquin; Dustin Dovala; Daniel N A Bolon
Journal:  Elife       Date:  2022-06-20       Impact factor: 8.713

  2 in total

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