| Literature DB >> 35281609 |
Shisheng Jiang1, Chaoming Huang1, Shulin Wang2, Biyun Huang1, Dan Wu1, Guodong Zheng1, Yi Cai1,2.
Abstract
Objective: Through a network pharmacology method, we screened the main active compounds of Citri Reticulatae Pericarpium (CRP), constructed a drug-ingredient-disease-target network, explored the molecular mechanism of its treatment of myocardial hypertrophy, and validated it by using molecular biology approach.Entities:
Mesh:
Substances:
Year: 2022 PMID: 35281609 PMCID: PMC8906983 DOI: 10.1155/2022/4293265
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Figure 1The workflow of key target gene prediction and validation of CRP therapy for myocardial hypertrophy.
Primer sequences for qRT-PCR.
| Primer | Sequences |
|---|---|
| NPPA | Forward:5′-GGAAGTCAACCCGTCTCA-3′ |
| Reverse:5′-AGCCCTCAGTTTGCTTTT-3′ | |
|
| |
| NPPB | Forward:5′-TTTGGGCAGAAGATAGACCG-3′ |
| Reverse:5′-AGAAGAGCCGCAGGCAGAG-3′ | |
|
| |
| PPARA | Forward:5′-TGAAAGATTCGGAAACTGC-3′ |
| Reverse:5′-TTCCTGCGAGTATGACCC-3′ | |
|
| |
| PPARG | Forward:5′-TACCACGGTTGATTTCTC-3′ |
| Reverse:5′-TCTACTTTGATCGCACTTT-3′ | |
|
| |
| ESR1 | Forward: 5′ AGACTCGCTACTGTGCTGTG 3′ |
| Reverse:5′-CCTGGCAACTCTTCCTCC-3′ | |
|
| |
| GAPDH | Forward:5′-AGGAGTAAGAAACCCTGGAC-3′ |
| Reverse:5′-CTGGGATGGAATTGTGAG-3′ | |
Characteristics of active ingredients in CRP.
| No. | Molecule ID | Molecule name | Molecular weight | OB (%) | DL |
|---|---|---|---|---|---|
| 1 | MOL000359 | Sitosterol | 414.79 | 36.91 | 0.75 |
| 2 | MOL004328 | Naringenin | 272.27 | 59.29 | 0.21 |
| 3 | MOL005100 | Hesperetin | 302.3 | 47.74 | 0.27 |
| 4 | MOL005815 | Citromitin | 404.45 | 86.9 | 0.51 |
| 5 | MOL005828 | Nobiletin | 402.43 | 61.67 | 0.52 |
41 potential target genes of CRP therapy for myocardial hypertrophy.
| No. | Target | Symbol | Entrez ID |
|---|---|---|---|
| 1 | Progesterone receptor | PGR | 5241 |
| 2 | Nuclear receptor coactivator 2 | NCOA2 | 10499 |
| 3 | Nuclear receptor subfamily 3 group C member 2 | NR3C2 | 4306 |
| 4 | Prostaglandin-endoperoxide synthase 1 | PTGS1 | 5742 |
| 5 | Estrogen receptor 1 | ESR1 | 2099 |
| 6 | Prostaglandin-endoperoxide synthase 2 | PTGS2 | 5743 |
| 7 | Heat shock protein 90 alpha family class B member 1 | HSP90AB1 | 3326 |
| 8 | Metallo-beta-lactamase domain-containing 2 | MBLAC2 | 153364 |
| 9 | Protein kinase CAMP-activated catalytic subunit alpha | PRKACA | 5566 |
| 10 | Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma | PIK3CG | 5294 |
| 11 | RELA proto-oncogene, NF-KB subunit | RELA | 5970 |
| 12 | AKT serine/threonine kinase 1 | AKT1 | 207 |
| 13 | BCL2 apoptosis regulator | BCL2 | 596 |
| 14 | Mitogen-activated protein kinase 3 | MAPK3 | 5595 |
| 15 | Mitogen-activated protein kinase 1 | MAPK1 | 5594 |
| 16 | Caspase 3 | CASP3 | 836 |
| 17 | Fatty acid synthase | FASN | 2194 |
| 18 | Low-density lipoprotein receptor | LDLR | 3949 |
| 19 | BCL2-associated agonist of cell death | BAD | 572 |
| 20 | Superoxide dismutase 1 | SOD1 | 6647 |
| 21 | Catalase | CAT | 847 |
| 22 | Peroxisome proliferator-activated receptor gamma | PPARG | 5468 |
| 23 | Apolipoprotein B | APOB | 338 |
| 24 | 3-Hydroxy-3-methylglutaryl-CoA reductase | HMGCR | 3156 |
| 25 | Cytochrome P450 family 19 subfamily A member 1 | CYP19A1 | 1588 |
| 26 | Glutathione S-transferase pi 1 | GSTP1 | 2950 |
| 27 | UDP glucuronosyltransferase family 1 member A1 | UGT1A1 | 54658 |
| 28 | Peroxisome proliferator-activated receptor alpha | PPARA | 5465 |
| 29 | Sterol regulatory element-binding transcription factor 1 | SREBF1 | 6720 |
| 30 | Glutathione-disulfide reductase | GSR | 2936 |
| 31 | Adiponectin, C1Q and collagen domain containing | ADIPOQ | 9370 |
| 32 | 4-Aminobutyrate aminotransferase | ABAT | 18 |
| 33 | Sterol O-acyltransferase 1 | SOAT1 | 6646 |
| 34 | Sodium voltage-gated Channel alpha subunit 5 | SCN5A | 6331 |
| 35 | Potassium voltage-gated Channel subfamily H member 2 | KCNH2 | 3757 |
| 36 | Coagulation factor VII | F7 | 2155 |
| 37 | Potassium calcium-activated channel subfamily M alpha 1 | KCNMA1 | 3778 |
| 38 | Nitric oxide synthase 2 | NOS2 | 4843 |
| 39 | Androgen receptor | AR | 367 |
| 40 | Estrogen receptor 2 | ESR2 | 2100 |
| 41 | Dipeptidyl peptidase 4 | DPP4 | 1803 |
Figure 2Potential target genes and PPI network map of CRP therapy for myocardial hypertrophy. (a) The Venny results of potential target genes of CRP therapy for myocardial hypertrophy. (b) The PPI network map of 41 target genes. (c) Count and list the top 30 genes of the PPI network map.
Figure 3The CRP-myocardial hypertrophy-potential target gene network.
The list of key active components in CRP dependent on the centrality of a node.
| No | Molecule name | Degree | Closeness unDir | Betweenness unDir |
|---|---|---|---|---|
| 1 | Naringenin | 30 | 0.013157895 | 534.495935 |
| 2 | Citromitin | 6 | 0.008064516 | 30.08565434 |
| 3 | Nobiletin | 4 | 0.0078125 | 14.99268293 |
| 4 | Sitosterol | 4 | 0.0078125 | 13.7000562 |
| 5 | Hesperetin | 2 | 0.007575758 | 3.497560976 |
Figure 4GO and KEGG analyses of potential target genes of CRP in myocardial hypertrophy. The GO analysis for biological process (a), molecular function (b), and cellular components (c) of potential target genes of CRP in myocardial hypertrophy. (d) The top 9 remarkably enriched KEGG analysis for the signaling pathway of potential target genes of CRP in myocardial hypertrophy.
Figure 5Effect of naringenin on the mRNA expression of NPPA and NPPB. H9C2 cells were treated with 20 μM naringenin for 1 h followed by stimulation with Ang II for 24 h. The mRNA expressions of NPPA (a) and NPPB (b) were detected by real-time PCR. ∗P < 0.05 vs. the group without treatment, #P < 0.05 vs. the group treated with Ang II, n = 5.
Figure 6Effect of naringenin on the expression of essential target genes (AKT, PPARA, PPARG, ESR1, and ERK1/2). H9C2 cells were treated with 20 μM naringenin for 1 h followed by stimulation with Ang II for 24 h. The mRNA expression of PPARA (a), PPARG (b), and ESR1 (c) were detected by real-time PCR. (d–f) The protein expression of ERK and AKT were checked by Western blotting. ∗P < 0.05 vs. the group without treatment, #P < 0.05 vs. the group treated with Ang II, n = 5.