| Literature DB >> 35279904 |
Hideaki Takeuchi1,2, Noriaki Yahata3,4,5, Giuseppe Lisi5,6, Kosuke Tsurumi1, Yujiro Yoshihara1, Ryosaku Kawada1, Takuro Murao1, Hiroto Mizuta1, Tatsunori Yokomoto1, Takashi Miyagi1, Yukako Nakagami7, Toshinori Yoshioka5, Junichiro Yoshimoto5,8, Mitsuo Kawato4, Toshiya Murai1, Jun Morimoto5, Hidehiko Takahashi2.
Abstract
AIM: Recently, a machine-learning (ML) technique has been used to create generalizable classifiers for psychiatric disorders based on information of functional connections (FCs) between brain regions at resting state. These classifiers predict diagnostic labels by a weighted linear sum (WLS) of the correlation values of a small number of selected FCs. We aimed to develop a generalizable classifier for gambling disorder (GD) from the information of FCs using the ML technique and examine relationships between WLS and clinical data.Entities:
Keywords: functional connection; gambling disorder; generalizable classifier; machine learning
Mesh:
Year: 2022 PMID: 35279904 PMCID: PMC9322453 DOI: 10.1111/pcn.13350
Source DB: PubMed Journal: Psychiatry Clin Neurosci ISSN: 1323-1316 Impact factor: 12.145
Imaging protocols for resting‐state fMRI
| Site | |||
|---|---|---|---|
| Parameter | Kyoto A | Kyoto B | Kyoto C |
| MRI scanner | Siemens TimTrio | Siemens Trio | Siemens Verio |
| Magnetic field strength (T) | 3.0 | 3.0 | 3.0 |
| Head coil (channel) | 32 | 8 | 32 |
| Field of view (mm) | 212 | 256 | 212 |
| Matrix | 64 | 64 | 64 |
| Number of slices | 40 | 30 | 39 |
| Number of volumes | 240 | 180 | 244 |
| In‐plane resolution (mm) | 3.3125 | 4.0 | 3.3125 |
| Slice thickness (mm) | 3.2 | 4.0 | 3.2 |
| Slice gap (mm) | 0.8 | 0 | 0.8 |
| TR (ms) | 2,500 | 2,000 | 2,500 |
| TE (ms) | 30 | 30 | 30 |
| Flip angle (degrees) | 80 | 90 | 80 |
| Slice acquisition order | Ascending | Interleaved | Ascending |
| Instructions | Please relax. Fixate on the central crosshair mark on the monitor and do not think about anything. | ||
Imaging protocols of T1‐weighted images
| Site | |||
|---|---|---|---|
| Parameter | Kyoto A | Kyoto B | Kyoto C |
| Field of view (mm) | 225 | 225 | 256 |
| Matrix | 240 | 240 | 256 |
| Number of volumes | 208 | 208 | 208 |
| resolution (mm) | 0.9375 | 0.9375 | 1.0 |
| Slice thickness (mm) | 1 | 1 | 1 |
| TR (ms) | 2,000 | 2,000 | 2,000 |
| TE (ms) | 3.40 | 4.38 | 3.51 |
| TI (ms) | 990 | 990 | 990 |
| Flip angle (degrees) | 8 | 8 | 8 |
Fig. 1Schematic diagram of the GD classifier development procedure. † Black, blue, red, and green lines are conceptually associated with training, testing, methods and features, respectively. (1) In each iteration of the inner loop feature selection (FS), 8/9 of the outer loop training set is used to train L1‐regularized sparse canonical correlation (L1‐SCCA) with different hyper‐parameters. Functional connectivity features (FCs) that are associated with the canonical variables connected only with the label “Diagnosis” are retained. (2) In the outer loop FS, 1/9 of the samples is retained as testing pool for leave‐one‐out cross‐validation (LOOCV), and union of the FCs selected throughout the inner loop is obtained. (3) One sample taken from the testing pool of the outer loop is used as test set of LOOCV. The remaining samples are used to train sparse logistic regressions (SLR) for the union of the FCs retained during the inner loop. This procedure is repeated for every sample in the testing pool of the outer loop. In this way, the test set of LOOCV is always independent from the dataset used to select features. (4) The union of the FCs selected across the outer loop is used to train the final SLR on all training datasets (= Kyoto A + Kyoto B), and validated using an external dataset (= Kyoto C). In summary, nested feature selection is used to remove nuisance FCs, LOOCV is used to quantify the generalizability on all training datasets, and external validation is used to quantify generalizability on the independent dataset.
Demographic and clinical characteristics
| Kyoto A | Kyoto B | Kyoto A + Kyoto B | Kyoto C | |||||
|---|---|---|---|---|---|---|---|---|
| Characteristic | GD | HC | GD | HC | GD | HC | GD | HC |
| ( | ( | ( | ( | ( | ( | ( | ( | |
| Mean (S.D.) | ||||||||
| Age (year) | 35.9 (10.7) | 36.2 (8.6) | 34.1 (8.7) | 33.5 (7.7) | 35.0 (9.6) | 34.8 (8.2) | 31.5 (8.7) | 29.5 (5.7) |
| Onset age (year) | 25.3 (7.4) | 21.0 (3.9) | 23.0 (6.2) | 20.0 (5.2) | ||||
| Duration of illness (year) | 10.6 (8.5) | 13.1 (8.6) | 11.9 (8.6) | 11.5 (9.8) | ||||
| Abstinent period (month) | 19.4 (48.4) | 9.9 (12.3) | 14.3 (34.3) | 11.8 (7.8) | ||||
| SOGS | 13.2 (2.7) | 0.8 (1.2) | 13.8 (2.4) | 0.3 (1.1) | 13.5 (2.5) | 0.6 (1.2) | 15.0 (2.6) | NA |
GD, gambling disorder; HC, healthy control; NA, not available; SOGS, South Oaks Gambling Screen.
Remaining volumes after head motion scrubbing
| Kyoto A | Kyoto B | Kyoto A + Kyoto B | Kyoto C | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GD | HC |
| GD | HC |
| GD | HC |
| GD | HC |
| |
| Mean percentages of remaining volumes | 91.2 | 91.5 | 0.92 | 91.1 | 97.6 | 0.004 | 91.1 | 94.6 | 0.048 | 82.7 | 92.0 | 0.16 |
| (S.D.) | (10.6) | (12.1) | (13.7) | (5.7) | (12.3) | (9.8) | (13.8) | (12.9) | ||||
GD, gambling disorder; HC, healthy control.
Properties of the 15 FCs used in the classification of GD and HC
| FCs ID | Terminal regions | Mean FC | Wt. | |||||
|---|---|---|---|---|---|---|---|---|
| Lat. | BSA (Sulcus) | AAL (Gyral region) | BA | Network | r GD | r HC | ||
| 1 | R | Cmrg.pos.f. | Middle cingulate & paracingulate gyri | 23 | DMN, SN, PN | 0.21 | 0.29 | −1.06 |
| R | Ant.scnt.rl.f. | Rolandic operculum | 44 | SN | ||||
| 2 | R | Intpar.s. | Inferior parietal gyrus | 40 | SN, ECN, VSN | −0.19 | −0.29 | 2.05 |
| L | Cmrg.ant.f. | Anterior cingulate & paracingulate gyri | 24, 32 | DMN, SN | ||||
| 3 | L | Sup.ptct.s. | Postcentral gyrus | 3 | SM | 0.17 | 0.02 | 2.88 |
| R | Calcar.f. | Calcarine fissure | 17 | PVN | ||||
| 4 | R | Intpar.s. | Inferior parietal gyrus | 40 | SN, ECN, VSN | 0.24 | 0.36 | −2.06 |
| R | Sup.pi.sup.s. | Postcentral gyrus | 3 | SM | ||||
| 5 | L | Rhinal.s. | Fusiform gyrus | 37 | HVN | −0.06 | 0.01 | −1.18 |
| L | Insula | Insula | 47, 48 | SN | ||||
| 6 | L | Pos.intl.s. | Lingual gyrus | 18, 19 | HVN | −0.003 | −0.08 | 2.03 |
| L | Subcal.s. | Posterior cingulate gyrus | 23 | PN | ||||
| 7 | L | Median.prct.s. | Precentral gyrus | 4 | VSN | −0.22 | −0.09 | −2.21 |
| R |
| Middle frontal gyrus | 46 | ECN, SN, DMN, VSN | ||||
| 8 | L |
| Middle frontal gyrus | 46 | ECN, SN, DMN, VSN | 0.18 | 0.04 | 1.92 |
| L |
| Superior frontal gyrus, medial | 6 | ECN, SN, VSN | ||||
| 9 | L | Sup.tmp.s. | Middle temporal gyrus | 21 | LN, ECN | 0.02 | 0.19 | −2.85 |
| R |
| Supplementary motor area | 6 | SN | ||||
| 10 | R | Sup.tmp.s. | Superior temporal gyrus | 22 | AN | −0.02 | −0.12 | 2.51 |
| R |
| Middle frontal gyrus | 46 | ECN, SN, DMN, VSN | ||||
| 11 | L |
| Inferior temporal gyrus | 20 | ECN | 0.16 | 0.09 | 1.45 |
| R |
| Fusiform gyrus | 37 | HVN | ||||
| 12 | R | Olfactory.s. | Gyrus rectus | 11 | NA | 0.05 | 0.13 | −0.98 |
| L |
| Inferior temporal gyrus | 20 | ECN | ||||
| 13 | L | Pos.tabst.s. | Middle temporal gyrus | 21 | LN, ECN | 0.13 | 0.08 | 1.29 |
| L | Trns.partl.s. | Precuneus | 5, 7 | ECN, SN, PN | ||||
| 14 | L | Pallidum | Pallidum | NA | NA | −0.004 | 0.07 | −1.07 |
| L | Polar.tmp.s. | Inferior temporal gyrus | 20 | ECN | ||||
| 15 | L | Hippocampus | Hippocampus | 20, 30, 36 | DMN | 0.08 | 0.13 | −1.76 |
| L | Pos.tabst.s. | Middle temporal gyrus | 21 | LN, ECN | ||||
Identification of the network is based on the Functional ROI (http://findlab.stanford.edu/research).
AAL, Anatomical automatic labeling; BA, Brodmann's area; L, left; BSA, Lat., laterality; R, right; Brainvisa Sulci Atlas; Wt., weight.
BSA abbreviations: cmrg.pos.f., calloso‐marginal posterior fissure; ant.scnt.rl.f., anterior sub‐central ramus of the lateral fissure; intpar.s., internal parietal sulcus; cmrg.ant.f., calloso‐marginal anterior fissure; sup.ptct.s., superior postcentral sulcus; calcar.f., calcarine fissure; intpar.s., internal parietal sulcus; rhinal.s., rhinal sulcus; pos.intl.s., posterior intra‐lingual sulcus; subcal.s., subcallosal sulcus; median.prct.s., median precentral sulcus; ant.inf.fr.s., anterior inferior frontal sulcus; orbital.fr.s., orbital frontal sulcus; intnl.fr.s., internal frontal sulcus; sup.tmp.s., superior temporal sulcus; median.fr.s., median frontal sulcus; med.occt.lt.s., median occipito‐temporal lateral sulcus; int.occt.lt.s., internal occipito‐temporal lateral sulcus; olfactory.s., olfactory sulcus; pos.tabst.s., posterior terminal ascending branch of the superior temporal sulcus; trns.partl.s., transverse parietal sulcus; polar.tmp.s., polar temporal sulcus.
Network abbreviations: AN, auditory network; BGN, basal ganglia network; DMN, default mode network; ECN, executive control network; HVN, higher visual network; LN, language network; PN, precuneus network; PVN, primary visual network; SN, salience network; SMN, sensorimotor network; VSN, visuospatial network.
Fig. 2Distribution of WLS for GD and HC in training data. † The number of healthy controls (Kyoto A = blue, Kyoto B = light blue) and patients with gambling disorder (Kyoto A = yellow, Kyoto B = red) in the training dataset included in a specific WLS interval of width 2 is shown as a histogram.
Fig. 3Distribution of WLS for GD and HC in external data. † The number of healthy controls (white) and patients with gambling disorder (black) in the external dataset included in a specific WLS interval of width 2 is shown as a histogram.