Denis Schapiro1,2,3,4, Clarence Yapp1,5, Artem Sokolov1,6, Sheila M Reynolds7, Yu-An Chen1, Damir Sudar8, Yubin Xie9, Jeremy Muhlich1, Raquel Arias-Camison1, Sarah Arena1, Adam J Taylor10, Milen Nikolov10, Madison Tyler1, Jia-Ren Lin1, Erik A Burlingame11,12, Young H Chang11, Samouil L Farhi2, Vésteinn Thorsson7, Nithya Venkatamohan13, Julia L Drewes14, Dana Pe'er9, David A Gutman15, Markus D Herrmann16, Nils Gehlenborg6, Peter Bankhead17, Joseph T Roland18, John M Herndon19, Michael P Snyder20, Michael Angelo20, Garry Nolan20, Jason R Swedlow21, Nikolaus Schultz22, Daniel T Merrick23, Sarah A Mazzili24, Ethan Cerami13, Scott J Rodig25, Sandro Santagata26,27, Peter K Sorger28,29. 1. Laboratory of Systems Pharmacology, Ludwig Center for Cancer Research at Harvard, Harvard Medical School, Boston, MA, USA. 2. Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA. 3. Institute for Computational Biomedicine, Faculty of Medicine, Heidelberg University Hospital and Heidelberg University, Heidelberg, Germany. 4. Institute of Pathology, Heidelberg University Hospital, Heidelberg, Germany. 5. Image and Data Analysis Core, Harvard Medical School, Boston, MA, USA. 6. Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA. 7. Institute for Systems Biology, Seattle, WA, USA. 8. Quantitative Imaging Systems LLC, Portland, OR, USA. 9. Program in Computational and Systems Biology, Memorial Sloan Kettering Cancer Center, New York, NY, USA. 10. Sage Bionetworks, Seattle, WA, USA. 11. Oregon Health and Science University, Portland, OR, USA. 12. Indica Labs, Albuquerque, NM, USA. 13. Dana-Farber Cancer Institute, Boston, MA, USA. 14. Johns Hopkins University School of Medicine, Baltimore, MD, USA. 15. School of Medicine, Emory University, Atlanta, GA, USA. 16. Department of Pathology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA. 17. Edinburgh Pathology, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK. 18. Vanderbilt University School of Medicine, Nashville, TN, USA. 19. Department of Surgery, Washington University School of Medicine, St. Louis, MO, USA. 20. School of Medicine, Stanford University, Stanford, CA, USA. 21. Division of Computational Biology and Centre for Gene Regulation and Expression, University of Dundee, Dundee, UK. 22. Department of Epidemiology & Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA. 23. Pathology, University of Colorado, Aurora, CO, USA. 24. Boston University, Boston, MA, USA. 25. Department of Pathology, Brigham and Women's Hospital, Boston, MA, USA. 26. Laboratory of Systems Pharmacology, Ludwig Center for Cancer Research at Harvard, Harvard Medical School, Boston, MA, USA. ssantagata@bics.bwh.harvard.edu. 27. Department of Pathology, Brigham and Women's Hospital, Boston, MA, USA. ssantagata@bics.bwh.harvard.edu. 28. Laboratory of Systems Pharmacology, Ludwig Center for Cancer Research at Harvard, Harvard Medical School, Boston, MA, USA. peter_sorger@hms.harvard.edu. 29. Department of Systems Biology, Harvard Medical School, Boston, MA, USA. peter_sorger@hms.harvard.edu.
Authors: Denis Schapiro; Artem Sokolov; Clarence Yapp; Yu-An Chen; Jeremy L Muhlich; Joshua Hess; Allison L Creason; Ajit J Nirmal; Gregory J Baker; Maulik K Nariya; Jia-Ren Lin; Zoltan Maliga; Connor A Jacobson; Matthew W Hodgman; Juha Ruokonen; Samouil L Farhi; Domenic Abbondanza; Eliot T McKinley; Daniel Persson; Courtney Betts; Shamilene Sivagnanam; Aviv Regev; Jeremy Goecks; Robert J Coffey; Lisa M Coussens; Sandro Santagata; Peter K Sorger Journal: Nat Methods Date: 2021-11-25 Impact factor: 47.990
Authors: Rumana Rashid; Yu-An Chen; John Hoffer; Jeremy L Muhlich; Jia-Ren Lin; Robert Krueger; Hanspeter Pfister; Richard Mitchell; Sandro Santagata; Peter K Sorger Journal: Nat Biomed Eng Date: 2021-11-08 Impact factor: 29.234
Authors: Ajit J Nirmal; Zoltan Maliga; Tuulia Vallius; Sandro Santagata; Peter K Sorger; Brian Quattrochi; Alyce A Chen; Connor A Jacobson; Roxanne J Pelletier; Clarence Yapp; Raquel Arias-Camison; Yu-An Chen; Christine G Lian; George F Murphy Journal: Cancer Discov Date: 2022-06-02 Impact factor: 38.272
Authors: Shannon Coy; Shu Wang; Sylwia A Stopka; Jia-Ren Lin; Clarence Yapp; Cecily C Ritch; Lisa Salhi; Gregory J Baker; Rumana Rashid; Gerard Baquer; Michael Regan; Prasidda Khadka; Kristina A Cole; Jaeho Hwang; Patrick Y Wen; Pratiti Bandopadhayay; Mariarita Santi; Thomas De Raedt; Keith L Ligon; Nathalie Y R Agar; Peter K Sorger; Mehdi Touat; Sandro Santagata Journal: Nat Commun Date: 2022-08-16 Impact factor: 17.694
Authors: Jeremy L Muhlich; Yu-An Chen; Clarence Yapp; Douglas Russell; Sandro Santagata; Peter K Sorger Journal: Bioinformatics Date: 2022-08-16 Impact factor: 6.931