Literature DB >> 35275763

Ensemble machine learning model identifies patients with HFpEF from matrix-related plasma biomarkers.

Michael Ward1, Amirreza Yeganegi1, Catalin F Baicu2, Amy D Bradshaw2, Francis G Spinale3,4, Michael R Zile2, William J Richardson1.   

Abstract

Arterial hypertension can lead to structural changes within the heart including left ventricular hypertrophy (LVH) and eventually heart failure with preserved ejection fraction (HFpEF). The initial diagnosis of HFpEF is costly and generally based on later stage remodeling; thus, improved predictive diagnostic tools offer potential clinical benefit. Recent work has shown predictive value of multibiomarker plasma panels for the classification of patients with LVH and HFpEF. We hypothesized that machine learning algorithms could substantially improve the predictive value of circulating plasma biomarkers by leveraging more sophisticated statistical approaches. In this work, we developed an ensemble classification algorithm for the diagnosis of HFpEF within a population of 480 individuals including patients with HFpEF, patients with LVH, and referent control patients. Algorithms showed strong diagnostic performance with receiver-operating-characteristic curve (ROC) areas of 0.92 for identifying patients with LVH and 0.90 for identifying patients with HFpEF using demographic information, plasma biomarkers related to extracellular matrix remodeling, and echocardiogram data. More impressively, the ensemble algorithm produced an ROC area of 0.88 for HFpEF diagnosis using only demographic and plasma panel data. Our findings demonstrate that machine learning-based classification algorithms show promise as a noninvasive diagnostic tool for HFpEF, while also suggesting priority biomarkers for future mechanistic studies to elucidate more specific regulatory roles.NEW & NOTEWORTHY Machine learning algorithms correctly classified patients with heart failure with preserved ejection fraction with over 90% area under receiver-operating-characteristic curves. Classifications using multidomain features (demographics and circulating biomarkers and echo-based ventricle metrics) proved more accurate than previous studies using single-domain features alone. Excitingly, HFpEF diagnoses were generally accurate even without echo-based measurements, demonstrating that such algorithms could provide an early screening tool using blood-based measurements before sophisticated imaging.

Entities:  

Keywords:  biomarkers; cardiac fibrosis; heart failure; machine learning; personalized medicine

Mesh:

Substances:

Year:  2022        PMID: 35275763      PMCID: PMC8993521          DOI: 10.1152/ajpheart.00497.2021

Source DB:  PubMed          Journal:  Am J Physiol Heart Circ Physiol        ISSN: 0363-6135            Impact factor:   4.733


  25 in total

1.  Plasma biomarkers that reflect determinants of matrix composition identify the presence of left ventricular hypertrophy and diastolic heart failure.

Authors:  Michael R Zile; Stacia M Desantis; Catalin F Baicu; Robert E Stroud; Sheila B Thompson; Catherine D McClure; Shannon M Mehurg; Francis G Spinale
Journal:  Circ Heart Fail       Date:  2011-02-24       Impact factor: 8.790

2.  Validation of diagnostic criteria and histopathological characterization of cardiac rupture in the mouse model of nonreperfused myocardial infarction.

Authors:  Anis Hanna; Arti V Shinde; Nikolaos G Frangogiannis
Journal:  Am J Physiol Heart Circ Physiol       Date:  2020-09-04       Impact factor: 4.733

3.  Left ventricular end-systolic wall stress is a potent prognostic variable in patients with dilated cardiomyopathy.

Authors:  Y Hara; M Hamada; K Hiwada
Journal:  Jpn Circ J       Date:  1999-03

4.  The progression from hypertension to congestive heart failure.

Authors:  D Levy; M G Larson; R S Vasan; W B Kannel; K K Ho
Journal:  JAMA       Date:  1996 May 22-29       Impact factor: 56.272

Review 5.  Myocardial matrix remodeling and the matrix metalloproteinases: influence on cardiac form and function.

Authors:  Francis G Spinale
Journal:  Physiol Rev       Date:  2007-10       Impact factor: 37.312

6.  Relation of disease pathogenesis and risk factors to heart failure with preserved or reduced ejection fraction: insights from the framingham heart study of the national heart, lung, and blood institute.

Authors:  Douglas S Lee; Philimon Gona; Ramachandran S Vasan; Martin G Larson; Emelia J Benjamin; Thomas J Wang; Jack V Tu; Daniel Levy
Journal:  Circulation       Date:  2009-06-08       Impact factor: 29.690

7.  Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease.

Authors:  David A Liem; Sanjana Murali; Dibakar Sigdel; Yu Shi; Xuan Wang; Jiaming Shen; Howard Choi; John H Caufield; Wei Wang; Peipei Ping; JiaWei Han
Journal:  Am J Physiol Heart Circ Physiol       Date:  2018-05-18       Impact factor: 4.733

8.  Usefulness of N-terminal pro-brain natriuretic Peptide and brain natriuretic peptide to predict cardiovascular outcomes in patients with heart failure and preserved left ventricular ejection fraction.

Authors:  Jasmine Grewal; Robert S McKelvie; Hans Persson; Peter Tait; Jonas Carlsson; Karl Swedberg; Jan Ostergren; Eva Lonn
Journal:  Am J Cardiol       Date:  2008-07-09       Impact factor: 2.778

9.  A computational study identifies HIV progression-related genes using mRMR and shortest path tracing.

Authors:  Chengcheng Ma; Xiao Dong; Rudong Li; Lei Liu
Journal:  PLoS One       Date:  2013-11-11       Impact factor: 3.240

10.  The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation.

Authors:  Davide Chicco; Giuseppe Jurman
Journal:  BMC Genomics       Date:  2020-01-02       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.