Literature DB >> 35274335

A semi-parametric Bayesian model for semi-continuous longitudinal data.

Junting Ren1,2, Susan Tapert3, Chun Chieh Fan2,4, Wesley K Thompson2,5.   

Abstract

Semi-continuous data present challenges in both model fitting and interpretation. Parametric distributions may be inappropriate for extreme long right tails of the data. Mean effects of covariates, susceptible to extreme values, may fail to capture relevant information for most of the sample. We propose a two-component semi-parametric Bayesian mixture model, with the discrete component captured by a probability mass (typically at zero) and the continuous component of the density modeled by a mixture of B-spline densities that can be flexibly fit to any data distribution. The model includes random effects of subjects to allow for application to longitudinal data. We specify prior distributions on parameters and perform model inference using a Markov chain Monte Carlo (MCMC) Gibbs-sampling algorithm programmed in R. Statistical inference can be made for multiple quantiles of the covariate effects simultaneously providing a comprehensive view. Various MCMC sampling techniques are used to facilitate convergence. We demonstrate the performance and the interpretability of the model via simulations and analyses on the National Consortium on Alcohol and Neurodevelopment in Adolescence study (NCANDA) data on alcohol binge drinking.
© 2022 John Wiley & Sons Ltd.

Entities:  

Keywords:  B-spline; Bayesian; Markov chain Monte Carlo; longitudinal; semi-continuous; semi-parametric

Mesh:

Year:  2022        PMID: 35274335      PMCID: PMC9035098          DOI: 10.1002/sim.9359

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.497


  23 in total

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Authors:  S A Brown; M G Myers; L Lippke; S F Tapert; D G Stewart; P W Vik
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3.  Penalized likelihood estimation for semiparametric mixed models, with application to alcohol treatment research.

Authors:  Jinsong Chen; Lei Liu; Bankole A Johnson; John O'Quigley
Journal:  Stat Med       Date:  2012-07-26       Impact factor: 2.373

4.  Adolescent Binge Drinking Is Associated With Accelerated Decline of Gray Matter Volume.

Authors:  M A Infante; S C Eberson; Y Zhang; T Brumback; S A Brown; I M Colrain; F C Baker; D B Clark; M D De Bellis; D Goldston; B J Nagel; K B Nooner; Q Zhao; K M Pohl; E V Sullivan; A Pfefferbaum; S F Tapert; W K Thompson
Journal:  Cereb Cortex       Date:  2022-06-07       Impact factor: 4.861

5.  A flexible two-part random effects model for correlated medical costs.

Authors:  Lei Liu; Robert L Strawderman; Mark E Cowen; Ya-Chen T Shih
Journal:  J Health Econ       Date:  2009-11-22       Impact factor: 3.883

6.  A flexible model for the mean and variance functions, with application to medical cost data.

Authors:  Jinsong Chen; Lei Liu; Daowen Zhang; Ya-Chen T Shih
Journal:  Stat Med       Date:  2013-05-13       Impact factor: 2.373

7.  The National Consortium on Alcohol and NeuroDevelopment in Adolescence (NCANDA): A Multisite Study of Adolescent Development and Substance Use.

Authors:  Sandra A Brown; Ty Brumback; Kristin Tomlinson; Kevin Cummins; Wesley K Thompson; Bonnie J Nagel; Michael D De Bellis; Stephen R Hooper; Duncan B Clark; Tammy Chung; Brant P Hasler; Ian M Colrain; Fiona C Baker; Devin Prouty; Adolf Pfefferbaum; Edith V Sullivan; Kilian M Pohl; Torsten Rohlfing; B Nolan Nichols; Weiwei Chu; Susan F Tapert
Journal:  J Stud Alcohol Drugs       Date:  2015-11       Impact factor: 2.582

8.  Efficient mixed model approach for large-scale genome-wide association studies of ordinal categorical phenotypes.

Authors:  Wenjian Bi; Wei Zhou; Rounak Dey; Bhramar Mukherjee; Joshua N Sampson; Seunggeun Lee
Journal:  Am J Hum Genet       Date:  2021-04-08       Impact factor: 11.043

Review 9.  A review of spline function procedures in R.

Authors:  Aris Perperoglou; Willi Sauerbrei; Michal Abrahamowicz; Matthias Schmid
Journal:  BMC Med Res Methodol       Date:  2019-03-06       Impact factor: 4.615

Review 10.  The ABCD study: understanding the development of risk for mental and physical health outcomes.

Authors:  Nicole R Karcher; Deanna M Barch
Journal:  Neuropsychopharmacology       Date:  2020-06-15       Impact factor: 7.853

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