| Literature DB >> 35273636 |
Ming Li1, Yi Xu1,2, Jiaqi Wu3, Chuanjie Wu2, Ang Li4, Xunming Ji1,2,3.
Abstract
Mendelian randomization was used to evaluate the potential causal association between N-terminal probrain natriuretic peptide (NT-proBNP) and ischemic stroke based on summary statistics data from large-scale genome-wide association studies. Three single-nucleotide polymorphisms (SNPs) rs198389, rs13107325, and rs11105306 associated with NT-proBNP levels found in large general populations and in patients with acute heart disease were used as instrumental variables. The results of genetic association analysis of each single SNP show that there is no significant association between NT-proBNP levels and ischemic stroke or its subtypes, whereas rs198389 alone has a suggestive association with large-artery atherosclerosis stroke. The MR analysis of three SNPs shows that NT-proBNP levels may reduce the risk of small-vessel occlusion stroke suggestively. This genetic analysis provides insights into the pathophysiology and treatment of ischemic stroke.Entities:
Keywords: N-terminal pro-brain natriuretic peptide; mendelian randomization; risk predictor; single nucleotide polymorphisms; stroke
Year: 2022 PMID: 35273636 PMCID: PMC8902306 DOI: 10.3389/fgene.2022.795479
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
FIGURE 1Schematic diagram of the MR assumptions. The arrows represent possible causal associations between variables. The dashed lines represent possible causal associations between variables that would violate the MR assumptions.
FIGURE 2The retrieval process and inclusion/discharge criteria of instrumental variables.
The data set and basic information of the stroke GWAS in 2018.
| Dataset | Stroke | Control | ||||
|---|---|---|---|---|---|---|
|
| % Female | Mean AAO |
| % Female | Mean AAE | |
| Metastroke | 20,000 | 44.4% | 67.1 | 19,326 | 49.9% | 61.0 |
| NINDS-SIGN | 7,743 | 46.1% | 66.5 | 17,970 | — | — |
| Charge | 4,348 | 67.0% | 75.8 | 80,613 | — | 63.7 |
| EPIC-CVD | 4,347 | 48.0% | 70.1 | 7,897 | 60.2% | 64.1 |
| Barcelona | 520 | 41.9% | 69.1 | 315 | 37.7% | 67.5 |
| Biobank Japan | 16,256 | 36.8% | 69.9 | 27,294 | 60.4% | 57.5 |
| CADISP | 555 | 38.9% | 43.7 | 9,259 | — | — |
| Compass | 5,541 | — | — | 15,154 | — | — |
| Decode | 5,520 | 44.2% | 78.7 | 254,000 | 49.9% | 53.3 |
| Glasgow | 599 | 49.7% | 69.9 | 1,775 | 48.8% | 69.6 |
| Finland | 501 | 40.9% | 64.0 | 1,813 | — | — |
| Hisayama | 1,113 | 39.1% | 69.7 | 901 | 40.5% | 69.4 |
| HVH—All | 805 | 65.7% | 68.3 | 1901 | 50.3% | 66.4 |
| Interstroke | 2,429 | 44.3% | 64.0 | 2,128 | 47.6% | 62.5 |
| MDC | 202 | 34.7% | 62.9 | 4,925 | 59.4% | 57.2 |
| RACE1 | 1,218 | 47.6% | 50.1 | 1,158 | 47.0% | 51.9 |
| RACE2 | 1,167 | — | — | 4,035 | — | — |
| SAHLSIS | 298 | 40.9% | 59.3 | 596 | 35.6% | 56.8 |
| SDS | 52 | 46.2% | 55.7 | 1,514 | 46.4% | 53.0 |
| SIFAP | 981 | 38.9% | 41.7 | 1825 | 50.7% | 55.2 |
| SLESS | 546 | 42.1% | 66.2 | 868 | 47.9% | 58.7 |
| UK young lacunar stroke DNA | 1,403 | 32.8% | 60.6 | 968 | 47.5% | 59.7 |
| ICH | 1,545 | 45.1% | 67.0 | 1,481 | 40.5% | 65.3 |
AAO, age at onset; AAE, age at examination.
The genetic association analysis of BNPs and ischemic stroke and its subtypes.
| SNP | Stroke types | Allele1 | Allele2 | Freq1 | Effect | StdErr |
|
|---|---|---|---|---|---|---|---|
| rs198389 | AIS | a | g | 0.5846 | 0.0093 | 0.0103 | 0.367 |
| LAS | a | g | 0.5833 | 0.0667 | 0.0254 | 0.008686 | |
| CES | a | g | 0.5851 | −0.0126 | 0.0196 | 0.5212 | |
| SVS | a | g | 0.5838 | 0.0406 | 0.0236 | 0.0856 | |
| rs13107325 | AIS | t | c | 0.0748 | −0.0065 | 0.0215 | 0.7611 |
| LAS | t | c | 0.0802 | 0.0206 | 0.0529 | 0.6965 | |
| CES | t | c | 0.0769 | −0.0299 | 0.0435 | 0.4921 | |
| SVS | t | c | 0.0766 | 0.0234 | 0.0475 | 0.6219 | |
| rs11105306 | AIS | t | c | 0.2461 | 0.0058 | 0.0123 | 0.6384 |
| LAS | t | c | 0.2432 | −0.0213 | 0.0294 | 0.4695 | |
| CES | t | c | 0.2439 | 0.0146 | 0.0229 | 0.5232 | |
| SVS | t | c | 0.2447 | 0.0492 | 0.0271 | 0.06945 |
Frequence.
Standard error.
Acute ischemic stroke.
Large-artery atherosclerosis stroke.
Cardioembolism stroke.
Small-vessel occlusion stroke.
MR analysis of association between 3 BNPs (rs198389, rs13107325, rs11105306) and ischemic stroke and its subtypes.
| Stroke types | Method | Estimate | Std. error | 95% CI |
|
|---|---|---|---|---|---|
| IS | Weighted median | −0.04 | 0.049 | −0.136, 0.056 | 0.415 |
| IVW | −0.044 | 0.043 | −0.129, 0.041 | 0.313 | |
| MR-Egger | 0.073 | 0.370 | −0.653, 0.799 | 0.843 | |
| MR-Egger (intercept) | −0.020 | 0.063 | −0.144, 0.104 | 0.751 | |
| LAS | Weighted median | 0.100 | 0.149 | −0.191, 0.391 | 0.501 |
| IVW | −0.107 | 0.105 | −0.314, 0.099 | 0.308 | |
| MR-Egger | 2.042 | 0.908 | 0.263, 3.821 | 0.024 | |
| MR-Egger (intercept) | −0.371 | 0.156 | −0.676, −0.066 | 0.017 | |
| CES | Weighted median | −0.031 | 0.095 | −0.218, 0.156 | 0.746 |
| IVW | −0.023 | 0.083 | −0.185, 0.139 | 0.779 | |
| MR-Egger | −0.808 | 0.720 | −2.219, 0.604 | 0.262 | |
| MR-Egger (intercept) | 0.135 | 0.123 | −0.106, 0.376 | 0.273 | |
| SVS | Weighted median | −0.268 | 0.114 | −0.492, −0.044 | 0.019 |
| IVW | -0.199 | 0.097 | −0.389, −0.009 | 0.040 | |
| MR-Egger | 0.631 | 0.933 | −1.197, 2.459 | 0.499 | |
| MR-Egger (intercept) | −0.144 | 0.160 | −0.458, 0.170 | 0.370 |
FIGURE 3The forest plot of the MR analysis.