| Literature DB >> 35268846 |
Yuji Suzaki1, Tomoko Abe1, Asami Takei1, Yugo Fukuchi1, Take-Aki Koizumi2, Kohtaro Osakada1,3, Masaki Horie4.
Abstract
Single crystals of pseudorotaxanes, [(FcCH2NH2CH2Ar)(DB24C8)][PF6] (DB24C8 = dibenzo[24]crown-8, Fc = Fe(C5H4)(C5H5), Ar = -C6H3-3,4-Cl2, -C6H3-3,4-F2, -C6H4-4-F, -C6H4-4-Cl, -C6H4-4-Br, -C6H3-3-F-4-Me, -C6H4-4-I) and [(FcCH2NH2CH2C6H4-4-Me)(DB24C8)][Ni(dmit)2] (dmit = 1,3-dithiole-2,4,5-dithiolate), were obtained from solutions containing DB24C8 and ferrocenylmethyl(arylmethyl)ammonium. X-ray crystallographic analyses of the pseudorotaxanes revealed that the aryl ring of the axle moiety and the catechol ring of the macrocyclic component were at close centroid distances and parallel or tilted orientation. The structures with parallel aromatic rings showed correlation of the distances between the centroids to Hammett substituent constants of the aryl groups.Entities:
Keywords: Hammett constants; aromatic interaction; crystal structure; pseudorotaxane
Year: 2022 PMID: 35268846 PMCID: PMC8911870 DOI: 10.3390/molecules27051745
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Typical structures of pseudorotaxane of DB24C8 and (ferrocenylmethyl)-(4-methylphenymethyl) ammonium.
Figure 1X-ray structures of pseudorotaxanes. (a) 1d, (b) 1c, and (c) 1i-Ni. The atoms are shown with 50% probabilities. Atoms of the anion and hydrogen atoms are omitted for simplicity.
Figure 2Contacts between the cationic rotaxanes and [Ni(dmit)2]− of 1i-Ni.
Crystal synthesis of pseudorotaxanes, 1a–1j.
| Pseudorotaxane | End Group of Axle Component (Hammett Const.) | Yield(%) | Structure | N⋯O distance/Å | ν(N–H)/cm−1 a | |||
|---|---|---|---|---|---|---|---|---|
| Ν1–O2 | Ν1–O3 | νs | νas | |||||
|
| -C6H3-3,4-Cl2 | (0.60) | 10% | α | 3.058 | 3.011 | 3060 (3233) | 3185 (3262) |
|
| -C6H3-3,4-F2 | (0.40) | 57% | β | 2.975 | 2.840 | 3066 (3233) | 3163 (3262) |
|
| -C6H4-4-F | (0.34) | 49% | β | 2.966 | 2.873 | 3077 (3236) | 3165 (3262) |
|
| -C6H4-4-Cl | (0.23) | 74% | α | 3.088 | 2.949 | 3069 (3235) | 3187 (3266) |
|
| -C6H4-4-Br | (0.23) | 85% | α | 3.092 | 2.943 | 3069 (3233) | 3187 (3265) |
|
| -C6H3-3-F-4-Me | (0.17) | 41% | α | 3.062 | 3.006 | 3067 (3233) | 3166 (3266) |
|
| -C6H4-4-I | (0.18) | 69% | α | 3.070 | 2.984 | 3065 (3235) | 3195 (3268) |
|
| -Ph | (0.00) | β | 2.941 | 2.857 | 3065 (3236) | 3156 (3262) | |
|
| -C6H4-4-Me | (−0.17) | α | 3.159 | 3.074 | 3067 (3250) | 3171 (3225) | |
|
| -C6H4-4-Me | (−0.17) | α | 3.114 | 3.021 | − | − | |
|
| -C6H4-4-OMe | (−0.27) | α | 2.995 | 2.997 | 3065 | 3195 | |
a Wavenumber of the axle molecule is shown in parenthesis. b Ref. [47]. c Refs. [44,45]. d Ref. [55].
Centroid distance and dihedral angles between the two aromatic groups in the axle and cyclic components.
| Pseudorotaxane A Ring | Structure | Relative Positions of Two Aromatic Groups | |||
|---|---|---|---|---|---|
| Centroid | Dihedral | Face-to-Face | |||
|
| -C6H3-3,4-Cl2 | α | 3.553 | 3.65 | 3.376 |
|
| -C6H3-3,4-F2 | β | 4.850 | 122.01 | – |
|
| -C6H4-4-F | β | 5.140 | 121.78 | – |
|
| -C6H4-4-Cl | α | 3.702 | 5.26 | 3.416 |
|
| -C6H4-4-Br | α | 3.694 | 5.00 | 3.394 |
|
| -C6H3-3-F-4-Me | α | 3.640 | 6.59 | 3.413 |
|
| -C6H4-4-I | α | 3.710 | 6.71 | 3.435 |
|
| -Ph | β | 5.128 | 57.61 | – |
|
| -C6H4-4-Me | α | 3.710 | 6.20 | 3.430 |
|
| -C6H4-4-Me | α | 3.665 | 4.59 | 3.398 |
|
| -C6H4-4-OMe | α | 3.779 | 7.94 | 3.529 |
a Data were taken from the results in refs. [44,45,46,47,50].
Figure 3Hammett correlations of (a) d and (b) θ to σ. Hammett constants were taken from ref. [56] by assuming their additivity.
Scheme 2Typical geometries of benzene dimers, (a) slipped-parallel, (b) parallel, and (c) perpendicular.
Figure 4Partial structures of pseudorotaxanes (a) 1a (left) and (b) 1j (right). Two close aromatic rings by crystallographic results and their schematic diagram are shown.