| Literature DB >> 35264871 |
Fanqi Wu1, Longguo Zhang2, Li Wang3, Dekui Zhang4.
Abstract
Purpose: Angiotensinogen (AGT), as a component of the renin-angiotensin system (RAS), is associated with multiple risk factors for gastric cancer (GC). However, the relationship between AGT and tumor-infiltrating lymphocytes in GC remains elusive.Entities:
Keywords: angiotensinogen; methylation; prognosis; stomach adenocarcinoma; tumor-infiltrating
Year: 2022 PMID: 35264871 PMCID: PMC8899101 DOI: 10.2147/IJGM.S351662
Source DB: PubMed Journal: Int J Gen Med ISSN: 1178-7074
Figure 1AGT expression in GC tissues and normal tissues based on TCGA database (A) and GEPIA database (B). The diagnostic value of AGT in GC using ROC curve (C). Correlation between AGT expression level and OS (D) and RFS/DFS (E) in GC based on TCGA dataset. Correlation between AGT expression and OS in GC based on GEPIA database (F), Kaplan-Meier Plotter (G); Correlation between AGT expression and RFS/DFS based on GEPIA database (H), Kaplan-Meier Plotter (I).
Figure 2(A) The relationship between AGT gene copy number alterations and immune cell infiltration levels. (B) Prognostic value of immune cells and AGT in GC. (C) Correlation of AGT expression with immune infiltration level in GC.
Correlation Analysis Between AGT and Related Genes and Markers of Immune Cells in TIMER
| Description | Gene Markers | None | Purity | ||||
|---|---|---|---|---|---|---|---|
| R | P value | P Star | R | P value | P Star | ||
| B cell | CD19 | 0.24 | 7.5E-07 | *** | 0.237 | 2.9E-06 | *** |
| CD79A | 0.208 | 2.1E-05 | *** | 0.205 | 6.0E-05 | *** | |
| CD8+ T cell | CD8A | 0.056 | 2.6E-01 | - | 0.063 | 2.2E-01 | - |
| CD8B | 0.113 | 2.1E-02 | * | 0.124 | 1.6E-02 | * | |
| CD4+ T cell | CD4 | 0.182 | 1.9E-04 | *** | 0.183 | 3.3E-04 | *** |
| M1 macrophage | NOS2 | 0.116 | 1.8E-02 | * | 0.102 | 4.7E-02 | * |
| IRF5 | 0.090 | 6.6E-02 | - | 0.091 | 7.7E-02 | - | |
| PTGS2 | 0.086 | 7.9E-02 | - | 0.078 | 1.3E-01 | - | |
| M2 macrophage | CD163 | 0.010 | 4.2E-02 | * | 0.087 | 9.0E-02 | - |
| VSIG4 | 0.094 | 5.5E-02 | - | 0.087 | 9.1E-02 | - | |
| MS4A4A | 0.132 | 7.0E-03 | ** | 0.125 | 1.5E-02 | * | |
| Neutrophil | CEACAM8 | 0.080 | 1.0E-01 | - | 0.085 | 9.8E-02 | - |
| ITGAM | 0.123 | 1.2E-02 | * | 0.115 | 2.6E-02 | * | |
| CCR7 | 0.283 | 5.1E-09 | *** | 0.294 | 5.6E-09 | *** | |
| Dendritic cell | HLA-DPB1 | 0.016 | 7.5E-01 | - | 0.009 | 8.6E-01 | - |
| HLA-DQB1 | −0.053 | 2.8E-01 | - | −0.072 | 1.6E-01 | - | |
| HLA-DRA | −0.067 | 1.8E-01 | - | −0.070 | 1.7E-01 | - | |
| HLA-DPA1 | −0.015 | 7.5E-01 | - | −0.022 | 6.8E-01 | - | |
| CD1C | 0.365 | 1.5E-14 | *** | 0.371 | 7.6E-14 | *** | |
| NRP1 | 0.268 | 3.2E-08 | *** | 0.249 | 9.4E-07 | *** | |
| ITGAX | 0.110 | 2.5E-02 | * | 0.085 | 9.8E-02 | - | |
| Monocyte | CD86 | 0.083 | 9.2E-02 | - | 0.066 | 2.0E-01 | - |
| CD115(CSF1R) | 0.261 | 7.5E-08 | *** | 0.243 | 1.7E-06 | *** | |
| TAM | CCL2 | 0.203 | 3.2E-05 | *** | 0.177 | 5.4E-04 | *** |
| CD68 | 0.159 | 1.2E-03 | ** | 0.136 | 8.0E-03 | ** | |
| IL10 | 0.145 | 3.1E-03 | ** | 0.120 | 1.9E-02 | * | |
| Th1 cell | T‐bet (TBX21) | 0.025 | 6.1E-01 | - | 0.023 | 6.6E-01 | - |
| STAT4 | 0.201 | 3.7E-05 | *** | 0.201 | 7.9E-05 | *** | |
| STAT1 | −0.070 | 1.5E-01 | - | −0.075 | 1.4E-01 | - | |
| TNF-α (TNF) | −0.030 | 5.4E-01 | - | −0.043 | 4.0E-01 | - | |
| Th2 cell | STAT6 | 0.193 | 7.3E-05 | *** | 0.190 | 2.0E-04 | *** |
| STAT5A | 0.136 | 5.6E-03 | ** | 0.144 | 5.1E-03 | ** | |
| IL13 | 0.018 | 7.2E-01 | - | 0.009 | 8.6E-01 | - | |
| Tfh cell | BCL6 | 0.117 | 1.7E-02 | * | 0.109 | 3.4E-02 | * |
| IL21 | −0.035 | 4.7E-01 | - | −0.042 | 4.1E-01 | - | |
| Th17 cell | STAT3 | 0.179 | 2.5E-04 | *** | 0.174 | 6.4E-04 | *** |
| IL17A | 0.069 | 1.6E-01 | - | 0.068 | 1.9E-01 | - | |
| Treg | FOXP3 | 0.175 | 3.5E-04 | *** | 0.176 | 5.7E-04 | *** |
| CCR8 | 0.179 | 2.5E-04 | *** | 0.170 | 8.9E-04 | *** | |
| STAT5B | 0.354 | 1.4E-13 | *** | 0.342 | 7.2E-12 | *** | |
| TGFβ (TGFB1) | 0.232 | 1.8E-06 | *** | 0.206 | 5.2E-05 | *** | |
| T cell exhaustion | PD-1 (PDCD1) | −0.006 | 9.0E-01 | - | 0.001 | 9.9E-01 | - |
| CTLA4 | −0.041 | 4.1E-01 | - | −0.043 | 4.1E-01 | - | |
| LAG3 | −0.059 | 2.3E-01 | - | −0.054 | 2.9E-01 | - | |
| TIM-3 (HAVCR2) | 0.036 | 4.6E-01 | - | 0.023 | 6.5E-01 | - | |
| NK cell | KIR2DL1 | −0.053 | 2.9E-01 | - | −0.06 | 2.5E-01 | - |
| KIR2DL3 | −0.007 | 1.5E-01 | - | −0.009 | 6.7E-01 | - | |
| KIR2DL4 | −0.207 | 2.1E-05 | *** | −0.210 | 3.9E-05 | *** | |
| KIR3DL1 | −0.070 | 1.5E-01 | - | −0.081 | 1.1E-01 | - | |
| KIR3DL2 | −0.063 | 2.0E-01 | - | −0.078 | 1.3E-01 | - | |
| KIR3DL3 | −0.091 | 6.4E-02 | - | −0.018 | 2.2E-02 | - | |
| KIR2DS4 | −0.105 | 3.2E-02 | * | −0.108 | 3.6E-02 | * | |
Notes: P-value Significant Codes: - P≥0.05, * P<0.05, ** P<0.01, *** P<0.001.
Figure 3Immune cell markers associated with AGT (P<0.01), including (A) Dendritic cell; (B) Th17 cell; (C) NK cell; (D) CD4+ T cell; (E) Th2 cell; (F) B cell; (G) Neutrophil; (H) TAM; (I) Monocyte; (J) M2 macrophage; (K) Treg; (L) Th1 cell.
Correlation Analysis Between AGT and Related Genes and Markers of Immune Cells in GEPIA
| Description | Gene Markers | Tumour | Normal | ||||
|---|---|---|---|---|---|---|---|
| R | P value | P Star | R | P value | P Star | ||
| B cell | CD19 | 0.21 | 2.9E-05 | *** | 0.68 | 5.1E-06 | *** |
| CD79A | 0.17 | 4.7E-04 | *** | 0.61 | 1.0E-04 | *** | |
| CD4+ T cell | CD4 | 0.16 | 8.2E-04 | *** | 0.54 | 7.2E-04 | *** |
| Dendritic cell | CD1C | 0.36 | 1.3E-13 | *** | −0.08 | 6.6E-01 | - |
| NRP1 | 0.27 | 4.0E-08 | *** | 0.01 | 9.5E-01 | - | |
| ITGAX | 0.10 | 4.4E-02 | * | 0.31 | 6.9E-02 | - | |
| HLA-DPB1 | 0.01 | 8.7E-01 | - | 0.47 | 4.0E-03 | ** | |
| HLA-DQB1 | −0.07 | 1.4E-01 | - | 0.6 | 1.7E-04 | *** | |
| HLA-DRA | −0.08 | 9.9E-02 | - | 0.59 | 2.2E-04 | *** | |
| HLA-DPA1 | −0.02 | 6.8E-01 | - | 0.49 | 2.5E-03 | ** | |
| Th2 cell | STAT6 | 0.14 | 5.1E-03 | ** | −0.35 | 3.6E-02 | * |
| STAT5A | 0.14 | 4.6E-03 | ** | −0.16 | 3.5E-01 | - | |
| IL13 | 0.06 | 2.0E-01 | - | −0.33 | 4.6E-02 | * | |
| Treg | FOXP3 | 0.14 | 4.8E-03 | ** | 0.46 | 5.0E-03 | ** |
| CCR8 | 0.16 | 1.6E-03 | ** | 0.28 | 1.0E-01 | - | |
| STAT5B | 0.32 | 5.5E-11 | *** | −0.31 | 6.3E-02 | - | |
| TGFβ(TGFB1) | 0.20 | 3.3E-05 | *** | −0.55 | 5.6E-04 | *** | |
| TAM | CCL2 | 0.21 | 2.1E-05 | *** | −0.17 | 3.2E-01 | - |
| CD68 | 0.13 | 9.5E-03 | ** | 0.41 | 1.4E-02 | * | |
| IL10 | 0.14 | 5.7E-03 | ** | 0.38 | 2.2E-02 | * | |
| M2 macrophage | CD163 | 0.01 | 9.1E-01 | - | −0.13 | 4.3E-01 | - |
| VSIG4 | 0.07 | 1.5E-01 | - | 0.15 | 3.8E-01 | - | |
| MS4A4A | 0.12 | 1.5E-02 | * | 0.07 | 6.9E-01 | - | |
| NK cell | KIR2DL1 | −0.06 | 2.7E-05 | - | 0.25 | 1.5E-01 | - |
| KIR2DL3 | −0.08 | 1.2E-01 | - | 0.30 | 7.3E-02 | - | |
| KIR2DL4 | −0.21 | 1.2E-05 | *** | 0.42 | 1.0E-02 | * | |
| KIR3DL1 | −0.08 | 9.1E-02 | - | 0.21 | 2.1E-01 | - | |
| KIR3DL2 | −0.06 | 2.0E-01 | - | 0.60 | 1.2E-04 | *** | |
| KIR3DL3 | −0.12 | 1.3E-02 | * | 0.14 | 4.1E-01 | - | |
| KIR2DS4 | −0.11 | 2.6E-02 | * | 0.30 | 8.0E-02 | - | |
Notes: P-value Significant Codes: - P≥0.05, * P<0.05, ** P<0.01, *** P<0.001.
Figure 4Methylation analysis of AGT. (A) Correlation between AGT mRNA expression and AGT DNA methylation. (B) AGT methylation between GC tissues and normal tissues. (C) Different methylated sites associated with AGT. The relationship between CpG sites and GC prognosis, including (D) cg07502417; (E) cg24474852; (F) cg22647018; (G) cg26882410; (H) cg14523948; (I) cg27401395.
Figure 5PPI network construction based on STRING database (A) and GeneMANIA database (B). GO analysis results (C).