Literature DB >> 35262228

The ECOTOXicology Knowledgebase: A Curated Database of Ecologically Relevant Toxicity Tests to Support Environmental Research and Risk Assessment.

Jennifer H Olker1, Colleen M Elonen1, Anne Pilli2, Arne Anderson2, Brian Kinziger2, Stephen Erickson2, Michael Skopinski2, Anita Pomplun2, Carlie A LaLone1, Christine L Russom1, Dale Hoff1.   

Abstract

The need for assembled existing and new toxicity data has accelerated as the amount of chemicals introduced into commerce continues to grow and regulatory mandates require safety assessments for a greater number of chemicals. To address this evolving need, the ECOTOXicology Knowledgebase (ECOTOX) was developed starting in the 1980s and is currently the world's largest compilation of curated ecotoxicity data, providing support for assessments of chemical safety and ecological research through systematic and transparent literature review procedures. The recently released version of ECOTOX (Ver 5, www.epa.gov/ecotox) provides single-chemical ecotoxicity data for over 12,000 chemicals and ecological species with over one million test results from over 50,000 references. Presented is an overview of ECOTOX, detailing the literature review and data curation processes within the context of current systematic review practices and discussing how recent updates improve the accessibility and reusability of data to support the assessment, management, and research of environmental chemicals. Relevant and acceptable toxicity results are identified from studies in the scientific literature, with pertinent methodological details and results extracted following well-established controlled vocabularies and newly extracted toxicity data added quarterly to the public website. Release of ECOTOX, Ver 5, included an entirely redesigned user interface with enhanced data queries and retrieval options, visualizations to aid in data exploration, customizable outputs for export and use in external applications, and interoperability with chemical and toxicity databases and tools. This is a reliable source of curated ecological toxicity data for chemical assessments and research and continues to evolve with accessible and transparent state-of-the-art practices in literature data curation and increased interoperability to other relevant resources. Environ Toxicol Chem 2022;41:1520-1539.
© 2022 SETAC. This article has been contributed to by US Government employees and their work is in the public domain in the USA. © 2022 SETAC. This article has been contributed to by US Government employees and their work is in the public domain in the USA.

Entities:  

Keywords:  Chemical assessment; Controlled vocabulary; Database; Ecotoxicology; Environmental toxicology; Interoperability; New approach methodologies; Systematic review

Mesh:

Year:  2022        PMID: 35262228      PMCID: PMC9408435          DOI: 10.1002/etc.5324

Source DB:  PubMed          Journal:  Environ Toxicol Chem        ISSN: 0730-7268            Impact factor:   4.218


  74 in total

1.  Chemical databases evaluated by order theoretical tools.

Authors:  Kristina Voigt; Rainer Brüggemann; Stefan Pudenz
Journal:  Anal Bioanal Chem       Date:  2004-09-18       Impact factor: 4.142

2.  CRED: Criteria for reporting and evaluating ecotoxicity data.

Authors:  Caroline T A Moermond; Robert Kase; Muris Korkaric; Marlene Ågerstrand
Journal:  Environ Toxicol Chem       Date:  2016-03-18       Impact factor: 3.742

3.  Predicting the toxicity of substituted phenols to aquatic species and its changes in the stream and effluent waters.

Authors:  Yong G Lee; Seok H Hwang; Sang D Kim
Journal:  Arch Environ Contam Toxicol       Date:  2006-01-02       Impact factor: 2.804

Review 4.  Practical approaches to adverse outcome pathway development and weight-of-evidence evaluation as illustrated by ecotoxicological case studies.

Authors:  Kellie A Fay; Daniel L Villeneuve; Carlie A LaLone; You Song; Knut Erik Tollefsen; Gerald T Ankley
Journal:  Environ Toxicol Chem       Date:  2017-03-31       Impact factor: 3.742

5.  Assessing the relevance of ecotoxicological studies for regulatory decision making.

Authors:  Christina Rudén; Julie Adams; Marlene Ågerstrand; Theo Cm Brock; Veronique Poulsen; Christian E Schlekat; James R Wheeler; Tala R Henry
Journal:  Integr Environ Assess Manag       Date:  2016-10-19       Impact factor: 2.992

6.  ToxRefDB version 2.0: Improved utility for predictive and retrospective toxicology analyses.

Authors:  Sean Watford; Ly Ly Pham; Jessica Wignall; Robert Shin; Matthew T Martin; Katie Paul Friedman
Journal:  Reprod Toxicol       Date:  2019-07-21       Impact factor: 3.143

7.  Beyond the 3Rs: Expanding the use of human-relevant replacement methods in biomedical research.

Authors:  Kathrin Herrmann; Francesca Pistollato; Martin L Stephens
Journal:  ALTEX       Date:  2019       Impact factor: 6.043

8.  Alterations in gene expression levels provide early indicators of chemical stress during Xenopus laevis embryo development: A case study with perfluorooctane sulfonate (PFOS).

Authors:  Laura San-Segundo; Laura Guimarães; Carlos Fernández Torija; Eulalia M Beltrán; Lúcia Guilhermino; María Victoria Pablos
Journal:  Ecotoxicol Environ Saf       Date:  2016-01-21       Impact factor: 6.291

9.  Chironomus sancticaroli (Diptera, Chironomidae) as a Sensitive Tropical Test Species in Laboratory Bioassays Evaluating Metals (Copper and Cadmium) and Field Testing.

Authors:  Carolina Buso Dornfeld; Suzelei Rodgher; Rogério Galante Negri; Evaldo Luiz Gaeta Espíndola; Michiel A Daam
Journal:  Arch Environ Contam Toxicol       Date:  2018-10-22       Impact factor: 2.804

10.  The NCBI Taxonomy database.

Authors:  Scott Federhen
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

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