| Literature DB >> 35259545 |
Bexultan Kazybay1, Ashfaq Ahmad2, Yingqiu Xie3.
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Year: 2022 PMID: 35259545 PMCID: PMC8897956 DOI: 10.1016/j.tmaid.2022.102306
Source DB: PubMed Journal: Travel Med Infect Dis ISSN: 1477-8939 Impact factor: 20.441
Fig. 1Interaction complexes of the estrogen receptor (ER) and androgen receptor (AR) with the wild type and Omicron Spike receptor binding domain (RBD). (A and B), indicates the ER complex with wild type Spike RBD and Omicron Spike RBD and (C and D) the androgen complex with wild type Spike RBD and Omicron Spike RBD. Interface residues are indicated by circles of charged based colors. The lines between them shows the respective interaction type, like salt-bridges (red), hydrogen bond interaction (blue) where the pink doted lines represent non-bonded interactions. Ligand binding domain (LBD) in both AR and ER were simulated for docking to RBD. In AR the LBD applied is from 670 to 900 amino acids and ER LBD used is from 311 to 547 amino acids. We have applied a template based modeling followed by building multimeric complexes by AlphaFold_Multimer. For ER templates from the Research Collaboratory for Structural Bioinformatics (RCSB) Protein Data Bank (PDB) (https://www.rcsb.org/) with PDB IDs are 1AKF, 1A52, 1ERE, 1ERR used. For the AR, PDB IDs 1E3G, 1T5Z, 1XJ7 are used.