| Literature DB >> 35256916 |
Libin Nan1, Kai Guo2, Mingmin Li3, Qi Wu1, Shaojun Huo1.
Abstract
Background: To explore the possible predicting factors related to prostate cancer and develop a validated nomogram for predicting the probability of patients with prostate cancer. Method: Clinical data of 697 patients who underwent prostate biopsy in Handan Central Hospital from January 2014 to January 2020 were retrospectively collected. Cases were randomized into two groups: 80% (548 cases) as the development group, and 20% (149 cases) as the validation group. Univariate and multivariate logistic regression analyses were performed to determine the independent risk factors for prostate cancer. The nomogram prediction model was generated using the finalized independent risk factors. Decision curve analysis (DCA) and the area under receiver operating characteristics curve (ROC) of both development group and validation group were calculated and compared to validate the accuracy and efficiency of the nomogram prediction model. Clinical utility curve (CUC) helped to decide the desired cut-off value for the prediction model. The established nomogram with Prostate Cancer Prevention Trial Derived Cancer Risk Calculator (PCPT-CRC) and other domestic prediction models using the entire study population were compared.Entities:
Keywords: Nomograms; Prostate-specific antigen; Prostatic neoplasms
Year: 2022 PMID: 35256916 PMCID: PMC8898009 DOI: 10.7717/peerj.12912
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Baseline clinical characteristics of the development group and validation group.
| Parameter | Total | Development group | Validation group | Z/χ2 | |
|---|---|---|---|---|---|
| Number of patients | 697 | 548 | 149 | ||
| Age (year) | 71 (66∼77) | 71 (66∼77) | 72 (65∼78) | −0.751 | 0.453 |
| tPSA (ng/ml) | 13.6 (5.6∼30.7) | 13.6 (5.6∼30.5) | 14.6 (5.4∼32.8) | −0.279 | 0.78 |
| fPSA (ng/ml) | 1.8 (0.8∼4.3) | 1.8 (0.73∼4.2) | 2.0 (0.95∼4.5) | −1.071 | 0.284 |
| PV (ml) | 47.9 (36.0∼69.2) | 46.6 (35.6∼68.2) | 50.4 (38.1∼72.4) | −1.556 | 0.12 |
| %fPSA | 0.14 (0.11∼0.18) | 0.13 (0.1∼0.17) | 0.15 (0.12∼0.20) | −3.088 | 0.002 |
| PSAD | 0.26 (0.1∼0.60) | 0.25 (0.11∼0.61) | 0.26 (0.09∼0.55) | −0.377 | 0.706 |
| DRE [n(%)] | 0.046 | 0.83 | |||
| Normal | 557 | 437 (80) | 120 (81) | ||
| Suspect cancer | 140 | 111 (20) | 29 (19) | ||
| TRUS finding * [n(%)] | 0.47 | 0.493 | |||
| Negative | 475 (68) | 370 (68) | 105 (70) | ||
| Positive | 222 (32) | 178 (32) | 44 (30) | ||
| BMI(kg/m2) [n(%)] | 1.959 | 0.376 | |||
| ≤22.9 | 311 (45) | 237 (43) | 74 (50) | ||
| 23.0∼27.4 | 266 (38) | 214 (39) | 52 (35) | ||
| ≥27.5 | 120 (17) | 97 (18) | 23 (15) | ||
| Hypertension [n(%)] | 0.803 | 0.37 | |||
| No | 322 (46) | 258 (47) | 64 (43) | ||
| Yes | 375 (54) | 290 (53) | 85 (57) | ||
| Diabetes [n(%)] | 0.256 | 0.613 | |||
| No | 575 (82) | 450 (82) | 125 (84) | ||
| Yes | 122 (18) | 98 (18) | 24 (16) |
Note:
tPSA, total prostate-specific antigen; fPSA, free prostate-specific antigen; PV, prostate volume; DRE, digital rectal examination; TRUS, transrectal ultrasound; *Low-echogenicity in the peripheral zone of the prostate was defined as ‘positive’; other findings were defined as ‘negative’.
Univariate and multivariate logistic regression models in the development group.
| Variable | Univariate analysis | Multivariate analysis | ||
|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | |||
| Age | 1.036 [1.010∼1.063] | 0.007 | 1.039 [1.005∼1.074] | 0.024 |
| tPSA | 1.040 [1.030∼1.050] | 0.01 | 1.026 [1.010∼1.042] | 0.002 |
| fPSA | 1.256 [1.187∼1.233] | <0.001 | 1.215 [1.106∼1.336] | <0.001 |
| PV | 0.987 [0.979∼0.995] | 0.01 | 0.972 [0.961∼0.983] | <0.001 |
| DRE | 3.131 [2.024∼4.843] | <0.001 | 3.185 [1.798∼5.641] | <0.001 |
| TRUS | 4.1 [2.754∼6.104] | <0.001 | 4.560 [2.773∼7.500] | <0.001 |
| BMI | 1.466 [1.137∼1.889] | 0.003 | 1.852 [1.337∼2.567] | <0.001 |
| Hypertension | 0.988 [0.677∼1.442] | 0.951 | ||
| Diabetes | 0.853 [0.515∼1.412] | 0.536 | ||
Note:
tPSA, total prostate-specific antigen; fPSA, free prostate-specific antigen; PV, prostate volume; DRE, digital rectal examination; TRUS, transrectal ultrasound; OR, odds radio; CI, confidence interval.
Result of multivariate logistic regression analysis in the development group.
| Variable | Coefficient | SE | Wald | OR | 95% CI | |
|---|---|---|---|---|---|---|
| Age | 0.038 | 0.017 | 5.069 | 1.039 | [1.005∼1.074] | 0.024 |
| tPSA | 0.025 | 0.008 | 9.853 | 1.026 | [1.010∼1.042] | 0.002 |
| fPSA | 0.195 | 0.048 | 16.28 | 1.215 | [1.106∼1.336] | <0.001 |
| PV | −0.028 | 0.006 | 22.599 | 0.972 | [0.961∼0.983] | <0.001 |
| DRE | 1.158 | 0.292 | 15.782 | 3.185 | [1.798∼5.641] | <0.001 |
| TRUS | 1.517 | 0.254 | 35.734 | 4.56 | [2.773∼7.500] | <0.001 |
| BMI | 0.617 | 0.166 | 13.714 | 1.852 | [1.337∼2.567] | <0.001 |
| Constant | −4.934 | 1.312 | 14.15 | 0.007 | <0.001 |
Note:
tPSA, total prostate-specific antigen; fPSA, free prostate-specific antigen; PV, prostate volume; DRE, digital rectal examination; TRUS, transrectal ultrasound; SE, Standard error; OR, odds radio; CI, confidence interval.
Figure 1Nomogram for prostate cancer prediction model.
Figure 2ROC curve presenting the discrimination power of the nomogram (development group).
Figure 3ROC curve presenting the discrimination power of the nomogram (validation group).
Diagnostic values of model and clinical parameters in the development group and validation group for the results of prostate biopsy.
| Variable | Cutoff | Youden index | SEN | SPE | PPV | NPV | FNR | FPR | AUC | 95% CI | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| (%) | (%) | (%) | (%) | (%) | (%) | (AUC) | |||||
| Model (dev) | >0.31 | 0.59 | 73 | 85.8 | 65.5 | 89.6 | 27 | 14.2 | 0.856 | [0.824∼0.885] | <0.001 |
| tPSA | >31.5 | 0.36 | 49.3 | 86.5 | 57.5 | 82.2 | 50.7 | 13.5 | 0.713 | [0.673∼0.751] | <0.001 |
| %fPSA | <0.17 | 0.28 | 46.6 | 81.5 | 48.3 | 80.5 | 53.4 | 18.5 | 0.624 | [0.582∼0.665] | <0.001 |
| PSAD | >0.44 | 0.46 | 65.5 | 80 | 54.8 | 86.3 | 34.5 | 20 | 0.761 | [0.723∼0.797] | <0.001 |
| Model (val) | >0.31 | 0.49 | 62.2 | 87.5 | 68.3 | 84.3 | 37.8 | 12.5 | 0.797 | [0.724∼0.859] | <0.001 |
| tPSA | >31.5 | 0.24 | 44.4 | 80 | 48.8 | 76.9 | 55.6 | 20 | 0.662 | [0.580∼0.737] | <0.001 |
| %fPSA | <0.17 | 0.26 | 53.3 | 73.1 | 46.2 | 78.4 | 46.7 | 26.9 | 0.624 | [0.541∼0.702] | <0.001 |
| PSAD | >0.44 | 0.31 | 53.3 | 77.9 | 51.1 | 79.4 | 46.7 | 22.1 | 0.673 | [0.592∼0.748] | <0.001 |
Note:
dev, development group; val, validation group; tPSA, total prostate-specific antigen; %fPSA, the ratio of fPSA to tPSA; PSAD, prostate-specific antigen density; SEN, sensitivity; SPE, specificity; PPV, positive predictive value; NPV, negative predictive value; FNR, false negative rate; FPR, false positive rate; AUC, area under the curve; CI, confidence interval.
Figure 4Clinical utility curve of the development group.
Figure 5Clinical utility curve of the validation group.
Figure 6Calibration curve of the prediction model in the development group.
Figure 7Calibration curve of the prediction model in the validation group.
Figure 8Decision curve analysis of the prediction model and other variables in the development group.
predmodelA: prediction model; predmodelB: tPSA; predmodelC: %fPSA; predmodelD: PSAD.
Figure 9Decision curve analysis of the prediction model and other variables in the validation group.
predmodelA: prediction model; predmodelB: tPSA; predmodelC: %fPSA; predmodelD: PSAD.
Net benefit and reduction of the prediction model and other variables in the development and validation group.
| Threshold | dev | 31 | val | 31 |
|---|---|---|---|---|
| Probability (%) | ||||
| Net benefit (%) | Model | 15.1 | Model | 13.9 |
| tPSA | 7.9 | tPSA | 6.5 | |
| %fPSA | 4.6 | %fPSA | 5.5 | |
| PSAD | 10.3 | PSAD | 8.6 | |
| Treat all | −5.8 | Treat all | −1.2 | |
| Net reduction (%) | Model | 46.5 | Model | 33.5 |
| tPSA | 30.5 | tPSA | 17 | |
| %fPSA | 28.5 | %fPSA | 14.9 | |
| PSAD | 35.8 | PSAD | 21.7 |
Note:
dev, development group; val, validation group.
Diagnostic accuracy of our model and other models using validation group.
| Prediction model | AUC | 95% CI | |
|---|---|---|---|
| Our model (val) | 0.797 | [0.724∼0.859] | <0.001 |
| Domestic Model 1 | 0.739 | [0.661∼0.808] | <0.001 |
| Domestic Model 2 | 0.753 | [0.676∼0.820] | <0.001 |
| Domestic Model 3 | 0.694 | [0.613∼0.766] | <0.001 |
| Our model (val*) | 0.793 | [0.715∼0.857] | <0.001 |
| PCPT model | 0.668 | [0.582∼0.746] | <0.001 |
Note:
AUC, area under the curve; CI, confidence interval; val, validation group (149 cases); val*, validation group (136 cases).
Comparison of diagnostic values of other prediction models with that of our model.
| Prediction model | AUC | |
|---|---|---|
| Our model (val) | 0.797 | N/A |
| Domestic Model 1 | 0.739 | 0.1471 |
| Domestic Model 2 | 0.753 | 0.2424 |
| Domestic Model 3 | 0.694 | 0.0148 |
| Our model (val*) | 0.793 | N/A |
| PCPT-CRC | 0.668 | 0.032 |
Note:
AUC, area under the curve; val, validation group (149 cases); val*, validation group (136 cases).