| Literature DB >> 35256862 |
Huan Li1, Ren-Bin Liu1, Chen-Meng Long2, Yuan Teng3, Lin Cheng1, Yu Liu1.
Abstract
Purpose: Breast cancer (BC) is a multi-factorial disease. Its individual prognosis varies; thus, individualized patient profiling is instrumental to improving BC management and individual outcomes. An economical, multiparametric, and practical model to predict BC recurrence is needed. Patients andEntities:
Keywords: breast cancer; individualized patient profiles; multi-level diagnostics and disease modeling; random survival forest; recurrence
Year: 2022 PMID: 35256862 PMCID: PMC8898179 DOI: 10.2147/CMAR.S346871
Source DB: PubMed Journal: Cancer Manag Res ISSN: 1179-1322 Impact factor: 3.989
Figure 1Flowchart of the study design and patient selection.
Basic Information of the Training and Validation Sets
| Total Set | Training Set | Validation Set | P value | |
|---|---|---|---|---|
| Total (n) | 774 | 623 | 151 | – |
| Female (n) | 774 | 623 | 151 | – |
| Age (year) | 49.76±10.83 | 50.50±10.84 | 46.74±10.27 | 0.001 |
| ≥60 (n) | 155 (20.03%) | 138 (22.15%) | 17 (11.26%) | 0.011 |
| <60 (n) | 619 (79.97%) | 485 (77.85%) | 134 (88.74%) | |
| ≥35 (n) | 713 (92.12%) | 577 (92.62%) | 136 (90.07%) | 0.569 |
| <35 (n) | 61 (7.88%) | 46 (7.38%) | 15 (9.93%) | |
| BMI (kg/m2) | 23.19±3.18 | 23.69±3.36 | 21.49±1.54 | <0.001 |
| ALT (U/L) | 20.24±12.94 | 19.52 ± 13.84 | 23.23 ± 7.59 | <0.001 |
| AST (U/L) | 21.0±10.02 | 21.34±11.07 | 19.62±2.59 | 0.167 |
| TBIL (μmol/L) | 11.12±4.82 | 10.92±4.34 | 11.96±6.34 | 0.312 |
| DBIL (μmol/L) | 3.31±1.45 | 3.18±1.46 | 3.81±1.26 | <0.001 |
| GGT (U/L) | 25.40±17.80 | 26.81±8.62 | 25.03±19.46 | <0.001 |
| ALP (U/L) | 64.84±20.94 | 65.14±22.63 | 63.66±12.14 | 0.738 |
| ALB (g/L) | 42.63±4.37 | 42.59±3.58 | 42.80± 6.72 | 0.875 |
| GLB (g/L) | 27.30±4.21 | 27.15±3.99 | 27.88±5.02 | 0.169 |
| A/G | 1.60±0.28 | 1.60±0.25 | 1.58±0.37 | 0.821 |
| Cr (μmol/L) | 65.13±17.03 | 59.88±12.19 | 86.71±17.15 | <0.001 |
| GLU | 5.40±1.73 | 5.47±1.41 | 5.13±2.67 | <0.001 |
| UA | 313.78±80.62 | 315.80±89.10 | 305.96±29.50 | 0.409 |
| CHOL | 4.98±0.94 | 4.94±1.04 | 5.12±0.36 | 0.112 |
| TRIG | 1.24±0.88 | 1.35±0.95 | 0.81±0.34 | <0.001 |
| HDL | 1.36±0.45 | 1.30±0.32 | 1.59±0.73 | <0.001 |
| LDL | 3.06±0.87 | 3.11±0.90 | 2.88±0.76 | 0.017 |
| ApoA | 1.47±0.22 | 1.43±0.22 | 1.62±0.09 | <0.001 |
| ApoB | 1.01±0.27 | 1.03±0.30 | 0.94±0.07 | 0.005 |
| Lpa | 198.07±217.58 | 210.55±241.54 | 149.30±38.15 | 0.009 |
| WBC (×109/L) | 5.88±1.81 | 6.28±1.65 | 4.25±1.46 | <0.001 |
| NEUT (×109/L) | 3.69±1.40 | 3.91±1.42 | 2.75±0.81 | <0.001 |
| LYMPH (×109/L) | 1.77±0.58 | 1.82 ± 0.6 | 1.53±0.41 | <0.001 |
| RBC (×1012/L) | 4.42±0.52 | 4.43±0.55 | 4.37±0.35 | 0.449 |
| HCT | 0.37±0.04 | 0.38±0.04 | 0.35±0.02 | <0.001 |
| Hb (g/L) | 124.94±12.18 | 125.60±13.25 | 122.22±5.15 | 0.009 |
| PLT (×109/L) | 239.73±65.38 | 253.51±63.0 | 182.87±39.08 | <0.001 |
| AST/PLT | 0.09±0.11 | 0.09±0.12 | 0.11±0.02 | 0.268 |
| NLR | 2.29±1.27 | 2.39±1.37 | 1.85±0.59 | <0.001 |
| PLR | 146.78±57.36 | 152.87±61.37 | 121.68±23.51 | <0.001 |
| PT (s) | 12.86±0.71 | 12.95±0.74 | 12.51±0.36 | <0.001 |
| INR | 0.99±0.36 | 1.00±0.39 | 0.95±0.03 | 0.799 |
| Follow-up (months) | 55.59±25.43 | 60.24±25.68 | 36.42±11.77 | <0.001 |
| Tumor pathology | ||||
| Tumor stage | 0.569 | |||
| 0 | 29 (3.75%) | 27 (4.33%) | 2 (1.32%) | |
| I | 191 (24.68%) | 117 (18.78%) | 74 (49.01%) | |
| II | 382 (49.35%) | 330 (52.97%) | 52 (34.44%) | |
| III | 172 (22.22%) | 149 (23.92%) | 23 (15.23%) | |
| Histology | 0.569 | |||
| Invasive ductal carcinoma | 650 (83.98%) | 540 (86.68%) | 110 (72.85%) | |
| Invasive lobular carcinoma | 35 (4.52%) | 26 (4.17%) | 9 (5.96%) | |
| Carcinoma in situ | 51 (6.59%) | 32 (5.14%) | 19 (12.58%) | |
| Special types (inflammatory breast cancer, Paget’s disease, mucinous carcinoma, malignant phyllodes tumor) | 38 (4.91%) | 25 (4.01%) | 13 (8.61%) | |
| Immunohistochemistry | ||||
| ER statue | 0.005 | |||
| Negative | 150 (19.38%) | 135 (21.67%) | 15 (9.93%) | |
| Positive | 624 (80.62%) | 488 (78.33%) | 136 (90.07%) | |
| PR | 0.027 | |||
| Negative | 188 (24.29%) | 164 (26.32%) | 24 (15.89%) | |
| Positive | 586 (75.71%) | 459 (73.68%) | 127 (84.11%) | |
| HER2 status | 0.001 | |||
| Negative | 543 (70.16%) | 418 (67.09%) | 125 (82.78%) | |
| Positive | 231 (29.84%) | 205 (32.91%) | 26 (17.22%) | |
| Ki-67 | 0.028 | |||
| <14% | 257 (33.20%) | 193 (30.98%) | 64 (42.38%) | |
| ≥15% | 517 (66.80%) | 430 (69.02%) | 87 (57.62%) | |
| Axillary lymph node metastasis | 0.023 | |||
| No | 446 (57.62%) | 344 (55.22%) | 102 (67.55%) | |
| Yes | 328 (42.38%) | 279 (44.78%) | 49 (32.45%) | |
| Molecular type | 0.023 | |||
| Luminal A | 203 (26.23%) | 162 (26.0%) | 41 (27.15%) | |
| Luminal B | 414 (53.49%) | 343 (55.06%) | 71 (47.02%) | |
| HER2 enriched | 64 (8.27%) | 54 (8.67%) | 10 (6.62%) | |
| TNBC | 80 (10.34%) | 51 (8.19%) | 29 (19.21%) | |
| Adverse event | <0.001 | |||
| No | 137 (17.70%) | 136 (21.83%) | 1 (0.66%) | |
| Yes | 637 (82.30%) | 487 (78.17%) | 150 (99.64%) | |
| Serious adverse events (CTCTE>3) | <0.001 | |||
| No | 569 (73.51%) | 426 (68.38%) | 143 (94.70%) | |
| Yes | 205 (26.49%) | 197 (31.62%) | 8 (5.30%) | |
| Disruptions of therapy | 0.028 | |||
| No | 746 (96.38%) | 595 (95.51%) | 151 (100%) | |
| Yes | 28 (3.62%) | 28 (4.49%) | 0 | |
| Recurrence | 0.938 | |||
| No | 717 (92.64%) | 576 (92.46%) | 141 (93.38%) | |
| Yes | 57 (7.36%) | 47 (7.54%) | 10 (6.62%) | |
| Recurrence time (months) | 53.47±25.11 | 58.04±25.45 | 34.74±11.08 | <0.001 |
Figure 2Evaluating the number of variables contained in the optimal set using the root mean square error.
Figure 3Variable importance values derived from the random forest-recursive feature elimination analysis.
Figure 4Change in the prediction error rate of the recurrence risk model of breast cancer patients with tree number.
Figure 5Receiver operating characteristic curve of the developed random survival forest model.
Figure 6Kaplan-Meier survival curves of recurrence-free survival for the training set.
Figure 7Receiver operating characteristic curve of the developed random survival forest model assessment by the validation set.
Figure 8Kaplan-Meier survival curves of recurrence-free survival for the validation set.