Literature DB >> 35256817

Means, mechanisms and consequences of adenine methylation in DNA.

Konstantinos Boulias1,2,3, Eric Lieberman Greer4,5,6.   

Abstract

N6-methyl-2'-deoxyadenosine (6mA or m6dA) has been reported in the DNA of prokaryotes and eukaryotes ranging from unicellular protozoa and algae to multicellular plants and mammals. It has been proposed to modulate DNA structure and transcription, transmit information across generations and have a role in disease, among other functions. However, its existence in more recently evolved eukaryotes remains a topic of debate. Recent technological advancements have facilitated the identification and quantification of 6mA even when the modification is exceptionally rare, but each approach has limitations. Critical assessment of existing data, rigorous design of future studies and further development of methods will be required to confirm the presence and biological functions of 6mA in multicellular eukaryotes.
© 2022. Springer Nature Limited.

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Year:  2022        PMID: 35256817      PMCID: PMC9354840          DOI: 10.1038/s41576-022-00456-x

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   59.581


  162 in total

1.  Dam- and OxyR-dependent phase variation of agn43: essential elements and evidence for a new role of DNA methylation.

Authors:  Anu Wallecha; Vincent Munster; Jason Correnti; Teresa Chan; Marjan van der Woude
Journal:  J Bacteriol       Date:  2002-06       Impact factor: 3.490

2.  Detection of DNA Methylation in Genomic DNA by UHPLC-MS/MS.

Authors:  Konstantinos Boulias; Eric Lieberman Greer
Journal:  Methods Mol Biol       Date:  2021

3.  N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses.

Authors:  Qian Zhang; Zhe Liang; Xuean Cui; Changmian Ji; Yun Li; Pingxian Zhang; Jingrong Liu; Adeel Riaz; Pu Yao; Min Liu; Yunpeng Wang; Tiegang Lu; Hao Yu; Donglei Yang; Hongkun Zheng; Xiaofeng Gu
Journal:  Mol Plant       Date:  2018-11-15       Impact factor: 13.164

4.  SeqA: a negative modulator of replication initiation in E. coli.

Authors:  M Lu; J L Campbell; E Boye; N Kleckner
Journal:  Cell       Date:  1994-05-06       Impact factor: 41.582

Review 5.  The AlkB Family of Fe(II)/α-Ketoglutarate-dependent Dioxygenases: Repairing Nucleic Acid Alkylation Damage and Beyond.

Authors:  Bogdan I Fedeles; Vipender Singh; James C Delaney; Deyu Li; John M Essigmann
Journal:  J Biol Chem       Date:  2015-07-07       Impact factor: 5.157

6.  The host specificity system in Escherichia coli SK.

Authors:  I I Nikolskaya; N G Lopatina; N M Chaplygina; S S Debov
Journal:  Mol Cell Biochem       Date:  1976-11-30       Impact factor: 3.396

7.  Nucleosome phasing in Tetrahymena macronuclei.

Authors:  K Pratt; S Hattman
Journal:  J Protozool       Date:  1983-08

8.  Characteristics and homogeneity of N6-methylation in human genomes.

Authors:  Clare E Pacini; Charles R Bradshaw; Nigel J Garrett; Magdalena J Koziol
Journal:  Sci Rep       Date:  2019-03-26       Impact factor: 4.379

9.  METTL4 catalyzes m6Am methylation in U2 snRNA to regulate pre-mRNA splicing.

Authors:  Yeek Teck Goh; Casslynn W Q Koh; Donald Yuhui Sim; Xavier Roca; W S Sho Goh
Journal:  Nucleic Acids Res       Date:  2020-09-18       Impact factor: 16.971

10.  N6-methyladenine in DNA antagonizes SATB1 in early development.

Authors:  Zheng Li; Shuai Zhao; Raman V Nelakanti; Kaixuan Lin; Tao P Wu; Myles H Alderman; Cheng Guo; Pengcheng Wang; Min Zhang; Wang Min; Zongliang Jiang; Yinsheng Wang; Haitao Li; Andrew Z Xiao
Journal:  Nature       Date:  2020-07-15       Impact factor: 49.962

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  6 in total

Review 1.  Same modification, different location: the mythical role of N6-adenine methylation in plant genomes.

Authors:  Irma A Jiménez-Ramírez; Gema Pijeira-Fernández; Delia M Moreno-Cálix; Clelia De-la-Peña
Journal:  Planta       Date:  2022-06-13       Impact factor: 4.116

Review 2.  Epigenetic regulation of B cells and its role in autoimmune pathogenesis.

Authors:  Fan Xiao; Ke Rui; Xiaofei Shi; Haijing Wu; Xiaoyan Cai; Kathy O Lui; Qianjin Lu; Esteban Ballestar; Jie Tian; Hejian Zou; Liwei Lu
Journal:  Cell Mol Immunol       Date:  2022-10-12       Impact factor: 22.096

3.  Making a 6mA demethylase.

Authors:  Sisi Li; Jiamu Du
Journal:  Nat Chem Biol       Date:  2022-07       Impact factor: 16.174

Review 4.  DNA N6-Methyladenine Modification in Eukaryotic Genome.

Authors:  Hao Li; Ning Zhang; Yuechen Wang; Siyuan Xia; Yating Zhu; Chen Xing; Xuefeng Tian; Yinan Du
Journal:  Front Genet       Date:  2022-06-24       Impact factor: 4.772

5.  Dynamic changes in genomic 5-hydroxymethyluracil and N6-methyladenine levels in the Drosophila melanogaster life cycle and in response to different temperature conditions.

Authors:  Marta Starczak; Maciej Gawronski; Aleksandra Wasilow; Pawel Mijewski; Ryszard Olinski; Daniel Gackowski
Journal:  Sci Rep       Date:  2022-10-20       Impact factor: 4.996

Review 6.  Epigenetic Peripheral Biomarkers for Early Diagnosis of Alzheimer's Disease.

Authors:  Chiara Villa; Andrea Stoccoro
Journal:  Genes (Basel)       Date:  2022-07-22       Impact factor: 4.141

  6 in total

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