Literature DB >> 35256816

Endogenous ADAR-mediated RNA editing in non-human primates using stereopure chemically modified oligonucleotides.

Prashant Monian1, Chikdu Shivalila1, Genliang Lu1, Mamoru Shimizu1, David Boulay1, Karley Bussow1, Michael Byrne1, Adam Bezigian1, Arindom Chatterjee1, David Chew1, Jigar Desai1, Frank Favaloro1, Jack Godfrey1, Andrew Hoss1, Naoki Iwamoto1, Tomomi Kawamoto1, Jayakanthan Kumarasamy1, Anthony Lamattina1, Amber Lindsey1, Fangjun Liu1, Richard Looby1, Subramanian Marappan1, Jake Metterville1, Ronelle Murphy1, Jeff Rossi1, Tom Pu1, Bijay Bhattarai1, Stephany Standley1, Snehlata Tripathi1, Hailin Yang1, Yuan Yin1, Hui Yu1, Cong Zhou1, Luciano H Apponi1, Pachamuthu Kandasamy1, Chandra Vargeese2.   

Abstract

Technologies that recruit and direct the activity of endogenous RNA-editing enzymes to specific cellular RNAs have therapeutic potential, but translating them from cell culture into animal models has been challenging. Here we describe short, chemically modified oligonucleotides called AIMers that direct efficient and specific A-to-I editing of endogenous transcripts by endogenous adenosine deaminases acting on RNA (ADAR) enzymes, including the ubiquitously and constitutively expressed ADAR1 p110 isoform. We show that fully chemically modified AIMers with chimeric backbones containing stereopure phosphorothioate and nitrogen-containing linkages based on phosphoryl guanidine enhanced potency and editing efficiency 100-fold compared with those with uniformly phosphorothioate-modified backbones in vitro. In vivo, AIMers targeted to hepatocytes with N-acetylgalactosamine achieve up to 50% editing with no bystander editing of the endogenous ACTB transcript in non-human primate liver, with editing persisting for at least one month. These results support further investigation of the therapeutic potential of stereopure AIMers.
© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2022        PMID: 35256816     DOI: 10.1038/s41587-022-01225-1

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   68.164


  37 in total

1.  RNA editing in brain controls a determinant of ion flow in glutamate-gated channels.

Authors:  B Sommer; M Köhler; R Sprengel; P H Seeburg
Journal:  Cell       Date:  1991-10-04       Impact factor: 41.582

Review 2.  Uracil in DNA--occurrence, consequences and repair.

Authors:  Hans E Krokan; Finn Drabløs; Geir Slupphaug
Journal:  Oncogene       Date:  2002-12-16       Impact factor: 9.867

3.  RNA editing generates a diverse array of transcripts encoding squid Kv2 K+ channels with altered functional properties.

Authors:  D E Patton; T Silva; F Bezanilla
Journal:  Neuron       Date:  1997-09       Impact factor: 17.173

4.  An unwinding activity that covalently modifies its double-stranded RNA substrate.

Authors:  B L Bass; H Weintraub
Journal:  Cell       Date:  1988-12-23       Impact factor: 41.582

5.  Control of kinetic properties of AMPA receptor channels by nuclear RNA editing.

Authors:  H Lomeli; J Mosbacher; T Melcher; T Höger; J R Geiger; T Kuner; H Monyer; M Higuchi; A Bach; P H Seeburg
Journal:  Science       Date:  1994-12-09       Impact factor: 47.728

6.  Regulation of serotonin-2C receptor G-protein coupling by RNA editing.

Authors:  C M Burns; H Chu; S M Rueter; L K Hutchinson; H Canton; E Sanders-Bush; R B Emeson
Journal:  Nature       Date:  1997-05-15       Impact factor: 49.962

7.  Substrate recognition by ADAR1 and ADAR2.

Authors:  S K Wong; S Sato; D W Lazinski
Journal:  RNA       Date:  2001-06       Impact factor: 4.942

8.  RNA-Guided Adenosine Deaminases: Advances and Challenges for Therapeutic RNA Editing.

Authors:  Genghao Chen; Dhruva Katrekar; Prashant Mali
Journal:  Biochemistry       Date:  2019-04-03       Impact factor: 3.321

9.  Harnessing human ADAR2 for RNA repair - Recoding a PINK1 mutation rescues mitophagy.

Authors:  Jacqueline Wettengel; Philipp Reautschnig; Sven Geisler; Philipp J Kahle; Thorsten Stafforst
Journal:  Nucleic Acids Res       Date:  2017-03-17       Impact factor: 16.971

10.  Optimal guideRNAs for re-directing deaminase activity of hADAR1 and hADAR2 in trans.

Authors:  Marius F Schneider; Jacqueline Wettengel; Patrick C Hoffmann; Thorsten Stafforst
Journal:  Nucleic Acids Res       Date:  2014-04-17       Impact factor: 16.971

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  5 in total

1.  Targeted RNA editing in brainstem alleviates respiratory dysfunction in a mouse model of Rett syndrome.

Authors:  John R Sinnamon; Michael E Jacobson; John F Yung; Jenna R Fisk; Sophia Jeng; Shannon K McWeeney; Lindsay K Parmelee; Chi Ngai Chan; Siu-Pok Yee; Gail Mandel
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-08       Impact factor: 12.779

2.  Programmable RNA sensing for cell monitoring and manipulation.

Authors:  Yongjun Qian; Jiayun Li; Shengli Zhao; Elizabeth A Matthews; Michael Adoff; Weixin Zhong; Xu An; Michele Yeo; Christine Park; Xiaolu Yang; Bor-Shuen Wang; Derek G Southwell; Z Josh Huang
Journal:  Nature       Date:  2022-10-05       Impact factor: 69.504

3.  Oligonucleotide-directed RNA editing in primates.

Authors:  Erin E Doherty; Peter A Beal
Journal:  Mol Ther       Date:  2022-04-22       Impact factor: 12.910

4.  RNA Editing Therapeutics: Advances, Challenges and Perspectives on Combating Heart Disease.

Authors:  Maria Birgaoanu; Marco Sachse; Aikaterini Gatsiou
Journal:  Cardiovasc Drugs Ther       Date:  2022-10-14       Impact factor: 3.947

Review 5.  New CRISPR Tools to Correct Pathogenic Mutations in Usher Syndrome.

Authors:  Lauren Major; Michelle E McClements; Robert E MacLaren
Journal:  Int J Mol Sci       Date:  2022-10-01       Impact factor: 6.208

  5 in total

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