Noam Pinsk1, Avital Wagner1, Lilian Cohen2, Christopher J H Smalley3, Colan E Hughes3, Gan Zhang1, Mariela J Pavan4, Nicola Casati5, Anne Jantschke6, Gil Goobes2, Kenneth D M Harris3, Benjamin A Palmer1. 1. Department of Chemistry, Ben-Gurion University of the Negev, Be'er Sheba 8410501, Israel. 2. Department of Chemistry, Bar-Ilan University, 5290002 Ramat Gan, Israel. 3. School of Chemistry, Cardiff University, Cardiff CF10 3AT, Wales United Kingdom. 4. Ilse Katz Institute for Nanoscale Science & Technology, Ben-Gurion University of the Negev, Be'er Sheba 8410501, Israel. 5. Paul Scherrer Institute, Forschungsstrasse 111, 5232 Villigen PSI, Switzerland. 6. Institute of Geosciences, Johannes-Gutenberg-Universität 55128 Mainz, Germany.
Abstract
Highly reflective crystals of the nucleotide base guanine are widely distributed in animal coloration and visual systems. Organisms precisely control the morphology and organization of the crystals to optimize different optical effects, but little is known about how this is achieved. Here we examine a fundamental question that has remained unanswered after over 100 years of research on guanine: what are the crystals made of? Using solution-state and solid-state chemical techniques coupled with structural analysis by powder XRD and solid-state NMR, we compare the purine compositions and the structures of seven biogenic guanine crystals with different crystal morphologies, testing the hypothesis that intracrystalline dopants influence the crystal shape. We find that biogenic "guanine" crystals are not pure crystals but molecular alloys (aka solid solutions and mixed crystals) of guanine, hypoxanthine, and sometimes xanthine. Guanine host crystals occlude homogeneous mixtures of other purines, sometimes in remarkably large amounts (up to 20% of hypoxanthine), without significantly altering the crystal structure of the guanine host. We find no correlation between the biogenic crystal morphology and dopant content and conclude that dopants do not dictate the crystal morphology of the guanine host. The ability of guanine crystals to host other molecules enables animals to build physiologically "cheaper" crystals from mixtures of metabolically available purines, without impeding optical functionality. The exceptional levels of doping in biogenic guanine offer inspiration for the design of mixed molecular crystals that incorporate multiple functionalities in a single material.
Highly reflective crystals of the nucleotide base guanine are widely distributed in animal coloration and visual systems. Organisms precisely control the morphology and organization of the crystals to optimize different optical effects, but little is known about how this is achieved. Here we examine a fundamental question that has remained unanswered after over 100 years of research on guanine: what are the crystals made of? Using solution-state and solid-state chemical techniques coupled with structural analysis by powder XRD and solid-state NMR, we compare the purine compositions and the structures of seven biogenic guanine crystals with different crystal morphologies, testing the hypothesis that intracrystalline dopants influence the crystal shape. We find that biogenic "guanine" crystals are not pure crystals but molecular alloys (aka solid solutions and mixed crystals) of guanine, hypoxanthine, and sometimes xanthine. Guanine host crystals occlude homogeneous mixtures of other purines, sometimes in remarkably large amounts (up to 20% of hypoxanthine), without significantly altering the crystal structure of the guanine host. We find no correlation between the biogenic crystal morphology and dopant content and conclude that dopants do not dictate the crystal morphology of the guanine host. The ability of guanine crystals to host other molecules enables animals to build physiologically "cheaper" crystals from mixtures of metabolically available purines, without impeding optical functionality. The exceptional levels of doping in biogenic guanine offer inspiration for the design of mixed molecular crystals that incorporate multiple functionalities in a single material.
Highly reflective guanine
crystals are responsible for a diverse
array of optical phenomena in animal coloration[1,2] and
vision.[3−7] Biogenic guanine crystals are found in the β-polymorph,[8] which comprises π-stacked,
planar arrays of H-bonded molecules[8] (Figure ). Their optical
utility derives from the extreme in-plane refractive index (n = 1.83).[9,10] The thermodynamically favored
α-polymorph differs only in the direction of the stacking offset.[11] Organisms produce a striking array of different
guanine crystal morphologies to optimize specific optical effects[12] (Figure ). For example, narrow[13−15] and broad-band[16−18] reflectivity
is produced by constructive interference from multilayers of plate
crystals, in which the highly reflective but thermodynamically disfavored
(100) face (parallel to the H-bonded plane) is preferentially expressed.[19] White colors in spiders result from diffuse
scattering from randomly arranged micrometer-sized guanine prisms.[20−22] 3D-photonic crystals constructed from blocky guanine crystals produce
light-induced color changes in chameleons.[23] Noniridescent blue colors in certain lizards arise from scattering
from disorganized arrays of premature, nanosized guanine crystals.[24]
Figure 1
Molecular structures of (a) guanine and (b) hypoxanthine.
The crystal
structure of β-guanine viewed (c) perpendicular to the H-bonding
layer and (d) along the c axis, showing the stacking
of the planar H-bonded guanine layers.
Figure 2
Morphologies
of biogenic guanine crystals by SEM and TEM. (a, b)
Prismatic guanine crystals from the white spiders L.
pallidus (a) and A. lobata (b). The prisms are arranged into doublets attached by the (100)
face. (c) An irregular polygonal plate from the integument of the
silverC. deserticola spider. Elongated
hexagonal crystal plates from the skin of fishS. salar (d) andD. labrax (e). (f) Large irregular
polygonal plates from the wall of the swim bladder of the fishS. pilchardus. (g) Square plates from the eye of
the scallopP. maximus. (h) Synthetic
β-guanine crystals, twinned along the (100) face. (i) β-Guanine–hypoxanthine
mixed crystals, displaying a prismatic morphology elongated along
the a axis, and occasionally twinned along the (100)
face. The (100) face is denoted for each unique biogenic guanine morphology.
Molecular structures of (a) guanine and (b) hypoxanthine.
The crystal
structure of β-guanine viewed (c) perpendicular to the H-bonding
layer and (d) along the c axis, showing the stacking
of the planar H-bonded guanine layers.Morphologies
of biogenic guanine crystals by SEM and TEM. (a, b)
Prismatic guanine crystals from the white spiders L.
pallidus (a) and A. lobata (b). The prisms are arranged into doublets attached by the (100)
face. (c) An irregular polygonal plate from the integument of the
silverC. deserticola spider. Elongated
hexagonal crystal plates from the skin of fishS. salar (d) andD. labrax (e). (f) Large irregular
polygonal plates from the wall of the swim bladder of the fishS. pilchardus. (g) Square plates from the eye of
the scallopP. maximus. (h) Synthetic
β-guanine crystals, twinned along the (100) face. (i) β-Guanine–hypoxanthine
mixed crystals, displaying a prismatic morphology elongated along
the a axis, and occasionally twinned along the (100)
face. The (100) face is denoted for each unique biogenic guanine morphology.Almost nothing is known about how the morphology
of guanine crystals
is precisely controlled. Tackling this question is important to our
understanding of “organic biomineralization” and has
the potential to yield new, bioinspired approaches for controlling
the crystallization of synthetic materials. One hypothesis is that
organisms utilize other purine molecules as intracrystalline growth
additives to affect the morphology.[1,25] It was suggested
that hypoxanthine (Figure b) and xanthine may inhibit growth along the π-stacking direction, promoting the formation of platelike crystals.[1,26−28] Several studies reported the presence of hypoxanthine
in guanine-containing tissues in fish,[25,29−31] frogs,[32,33] and nudibranchs.[34] Adenine was also reported in frog integument.[33] In most cases it could not be ascertained whether the molecules
were present in the solid state or as solutes in the crystal-forming
cells. The relationship between crystal composition and morphology
remained ambiguous.Here, we evaluate the purine compositions
and structural properties
of biogenic guanine crystals with different crystal morphologies.
We show that biogenic “guanine” crystals are in fact
solid solutions of guanine and hypoxanthine and sometimes xanthine.
In some cases, remarkably large amounts (ca. 20 mol %) of hypoxanthine
are accommodated within the β-guanine host crystals without
altering the crystal structure. We find no correlation between the
crystal morphology and hypoxanthine content and conclude that dopants
do not dictate the biogenic guanine morphology. Instead, we hypothesize
that the ability of guanine crystals to occlude other purine molecules
enables organisms to build physiologically “cheaper”
crystals without impeding their optical functionality. Guanine host
crystals offer inspiration for the design of mixed crystals in which
the crystal properties (i.e., optical) could be tuned by manipulating
dopant composition.
Results
We first collected (see Materials and Methods in the Supporting Information)
guanine crystals from model species,
and their morphologies were characterized by scanning electron microscopy
(SEM) and transmission electron microscopy (TEM) (Figure and Figures S1–S3). The crystals were face-indexed using electron
diffraction. Species were chosen to enable a large variety of crystal
morphologies across a range of animal phyla to be studied. Synthetic
β-guanine[35] and synthetic β-guanine–hypoxanthine
mixed crystals were also investigated as controls.Guanine crystals
from white spidersLatrodectus pallidus(pallidus) andArgiope lobata(lobata) (Figure a,b) are prismatic. The crystals are usually observed
as “doublets” in which two crystals are adjoined by
their (100) faces. Each prism is typically 200–500 nm thick
and ca. 1 μm wide.Crystals from silverC. deserticola (deserticola) spiders
(Figure c) are thin
ca. 20 nm[20] polygonal plates. They are
assembled into doublets (70
nm thick in total) attached to each other by a noncrystalline material.[20] Some elongated hexagonal crystals were also
found in this sample (Figure S1). Crystals
from Salmo salar (salmon) and Dicentrarchus labrax (labrax) skin are thin (ca.
25 nm[20]) hexagonal plates elongated along
the b axis (Figure d,e). A mixture of irregular polygonal plates and elongated
hexagons (like those from fish skin) were extracted from the swim
bladder of the sardine,Sardina pilchardus (swim bladder) (Figure f and Figure S2). The swim bladder
is an internal organ in fish that controls buoyancy.[36] It is covered by a silvery layer of guanine crystals that
serves as a diffusion barrier to gases.[37,38] The (100)
plate face of the polygons varies between 2 and 50 μm in width.
In TEM, the crystals, found in stacks, are more transparent in comparison
to plates from fish skin, indicating they are thinner (<20 nm)
(Figure S3f). Crystals from the eyes of
scallops (Pecten maximus) are 75 nm
thick, 1.2 μm wide squares, twinned twice about the ⟨021⟩
axis[39] (Figure g). The synthetic β-guanine crystals
are prisms elongated along the a axis and are arranged
into stacks of crystals twinned about the (100) face (Figure h). The synthetic β-guanine–hypoxanthine
mixed crystals (Figure i) exhibit a variety of crystal morphologies but are usually prisms
elongated along the a axis (resembling pure synthetic
β-guanine) and occasionally twinned along the (100) faces.Raman spectra (Figure S4) obtained from
single crystals or powders of the biogenic crystals confirms that
all biogenic crystals are of the β-guanine polymorph. In addition
to the characteristic β-guanine modes,[40] peaks at 1321 and 1399 cm–1 are also present in
crystals from salmon and the swim bladder. Moreover, a relatively
intense (in comparison to the β-guanine standard) band at 725
cm–1 is also present in these crystals. This peak
coincides with the intense pyrimidine ring-breathing mode of hypoxanthine.[41] All of these additional Raman peaks are also
found in the β-guanine–hypoxanthine mixed crystals.To determine the purine composition of the biogenic crystals, crystals
were first rigorously purified (Supporting Information). The purified crystals were dissolved in buffer (NH4OH/NH4Cl, pH 10.4), and their UV–vis spectra were
measured (Figure a
and Figures S5 and S6). Under the same
conditions, the UV–vis spectra of guanine and hypoxanthine
standards (10–4 M) were recorded. The guanine:hypoxanthine
ratio of the biogenic crystals was then determined by fitting the
spectra to the absorbance of the two standards at their λmax values (λguanine = 273 nm, λhypoxanthine = 258 nm). According to the calculated guanine:hypoxanthine
ratio a simulated spectrum was generated for each biogenic sample.
The close agreement between the experimental UV–vis spectra
and the two-component guanine:hypoxanthine fits suggests that the
biogenic crystals are primarily binary mixtures of guanine and hypoxanthine.
For a more definitive determination of the crystal composition, high-pressure
liquid chromatography (HPLC) (Figure b and Figures S7–S9 and Tables S1 and S2) was performed. The hypoxanthine percentage
of the biogenic crystals was determined by comparing the hypoxanthine:guanine
peak area ratios with respect to a calibration curve (Figure S8). The compositions of the biogenic
crystals are shown in Figure c. Hypoxanthine was detected in small amounts (<2%) in
prismatic crystals from the two white spiders (pallidus and lobata). At these low percentages, the UV–vis
absorption curve is similar to the guanine standard and thus accurately
quantifying the hypoxanthine amount is difficult. In crystals from
silver spiders (deserticola), <1% of hypoxanthine
was detected by HPLC, whereas 4% was observed by UV–vis. The
fitting obtained for this particular UV–vis spectrum was relatively
poor, indicating the presence of other molecules affecting the absorbance.
Thus, the actual hypoxanthine quantity may be lower than that measured.
Crystals from labrax skin have 0–6% hypoxanthine by UV–vis
and 1% by HPLC. Guanine from the swim bladder and salmon skin have
the highest hypoxanthine content, with 8–12% and 13–18%
of hypoxanthine, respectively. In one out of four samples of crystals
from salmon skin, ca. 3% of xanthine was detected by HPLC. Hypoxanthine
(8%) was also detected in scallop eyes. The β-guanine–hypoxanthine
mixed crystals contain 31% of hypoxanthine by UV–vis.
Figure 3
Chemical composition
of biogenic guanine crystals. (a) UV–vis
spectra of purified biogenic guanine crystals and standards of guanine
and hypoxanthine (10–4 M). Fits of these spectra
were used to derive the guanine:hypoxanthine ratio of the biogenic
crystals. Experimental spectra are shown by solid-colored traces.
Simulated spectra are denoted by black dotted traces. (b) HPLC of
purified biogenic guanine crystals. The guanine and hypoxanthine retention
times were 6 and 7.5 min, respectively. The area under the peaks was
integrated, and the guanine:hypoxanthine ratio was determined by comparison
with calibration measurements. (c) Summary of the hypoxanthine content
of the biogenic crystals (mol %) determined from both UV–vis
and HPLC. n denotes the number of different samples
measured. β-Guanine–hypoxanthine mixed crystals are denoted
as “Syn G+H”.
Chemical composition
of biogenic guanine crystals. (a) UV–vis
spectra of purified biogenic guanine crystals and standards of guanine
and hypoxanthine (10–4 M). Fits of these spectra
were used to derive the guanine:hypoxanthine ratio of the biogenic
crystals. Experimental spectra are shown by solid-colored traces.
Simulated spectra are denoted by black dotted traces. (b) HPLC of
purified biogenic guanine crystals. The guanine and hypoxanthine retention
times were 6 and 7.5 min, respectively. The area under the peaks was
integrated, and the guanine:hypoxanthine ratio was determined by comparison
with calibration measurements. (c) Summary of the hypoxanthine content
of the biogenic crystals (mol %) determined from both UV–vis
and HPLC. n denotes the number of different samples
measured. β-Guanine–hypoxanthine mixed crystals are denoted
as “Syn G+H”.To rationalize how hypoxanthine is accommodated within the guanine
crystals, a detailed structural analysis was performed on the basis
of synchrotron powder XRD[42] data (Figure and Figures S10–S12 and Tables S3–S7). Powder XRD patterns show that all biogenic samples are β-guanine
(Figure b). No peaks
corresponding to either the monoclinic[43] or triclinic[44] phases of pure hypoxanthine
were observed in any of the PXRD patterns (Figure S11). In addition to the normal β-guanine diffraction
pattern, crystals from salmon, swim bladder, and β-guanine–hypoxanthine
mixed crystals exhibit a weak peak at 2θ = 3.1°, corresponding
to the (001) reflection (Figure b, inset). In the P21/b space group, this reflection is symmetry forbidden due
to the 21 screw axis. High amounts of hypoxanthine doping
are the likely cause of this symmetry breaking. Powder XRD of crystals
from the two white spiders and labrax contain up to 14% of α-guanine,
and the silver spider deserticola has 39% of α-guanine.
The α-guanine is probably produced by a solid-state transformation
of the β-polymorph to the thermodynamically stable[8] α-polymorph during crystal purification.
Since guanine is insoluble in water, we rule out the possibility that
the β-polymorph dissolves and recrystallizes to the α-polymorph
during cleaning. This is evidenced by the fact that the cleaned crystals
retain the original crystal morphology and exhibit smooth (i.e., non-etched)
surfaces when they are observed by SEM. We observe significant shifts
in the peak positions between the different biogenic crystals (Figure a), with the positions
of the (100) and (020) reflections being shifted to higher d spacing in samples containing hypoxanthine, whereas the
position of the (002) reflection remains constant.
Figure 4
High-resolution synchrotron
powder XRD data and analysis. (a) The
(100), (020), and (002) reflections of the β-guanine structure
observed in crystals from salmon, swim bladder and the lobata spider. The (100) and (020) peaks in crystals from salmon and swim
bladder are shifted toward lower angles. (b) Examples of powder XRD
patterns of salmon guanine and synthetic β-guanine. Inset: the
symmetry-forbidden (001) peak present in the salmon pattern. (c–f)
Plots of the relative change in unit cell parameters of biogenic and
synthetic guanine crystals with respect to those of the white spider lobata obtained by Rietvled refinement (Table S3): (c) volume, (d) the distance, a′, between H-bonding sheets and (e) the b-axis and (f) c-axis. Synthetic β-guanine
is denoted “Syn β-guanine”, and β-guanine–hypoxanthine
mixed crystals is denoted “Syn G+H″. Filled and hollow
data points of the same color and shape represent data points from
different samples of the same species.
High-resolution synchrotron
powder XRD data and analysis. (a) The
(100), (020), and (002) reflections of the β-guanine structure
observed in crystals from salmon, swim bladder and the lobata spider. The (100) and (020) peaks in crystals from salmon and swim
bladder are shifted toward lower angles. (b) Examples of powder XRD
patterns of salmon guanine and synthetic β-guanine. Inset: the
symmetry-forbidden (001) peak present in the salmon pattern. (c–f)
Plots of the relative change in unit cell parameters of biogenic and
synthetic guanine crystals with respect to those of the white spider lobata obtained by Rietvled refinement (Table S3): (c) volume, (d) the distance, a′, between H-bonding sheets and (e) the b-axis and (f) c-axis. Synthetic β-guanine
is denoted “Syn β-guanine”, and β-guanine–hypoxanthine
mixed crystals is denoted “Syn G+H″. Filled and hollow
data points of the same color and shape represent data points from
different samples of the same species.To quantify these variations in lattice parameters and to ascertain
whether lattice distortions are correlated with hypoxanthine content,
we performed a Rietveld refinement of the powder XRD data using the
crystal structure of β-guanine as the structural model (Figure S10). Two-phase refinements were performed
for samples containing both the β-phase and the α-phase.
The refined unit cell parameters are shown in Table S3. To elucidate the effect of hypoxanthine inclusion
in the guanine crystal structure, the relative difference between
the lattice parameters of the biogenic crystals and those of lobata (where hypoxanthine is absent or present only in
trace amounts) are shown in Figure c–f. Perhaps surprisingly, crystals containing
more hypoxanthine have higher unit cell volumes, even though hypoxanthine
has a lower molecular volume compared to guanine. This may be due
to the presence of structural water in hypoxanthine-doped biogenic
guanine crystals (see ss-NMR results and the Discussion). To rationalize these lattice distortions, we note that the perpendicular
distance between the H-bonded layers, (denoted as a′ and defined as a′ = a cos(γ – 90°)) is affected by hypoxanthine inclusion.
Specifically, a′ increases with increasing
hypoxanthine content, meaning that hypoxanthine inclusion is associated
with an expansion of the unit cell along the [100] stacking direction.
Along the unique c axis, the lattice distortions
are very small. The unit cell volume of pure synthetic β-guanine
is higher than that of crystals from white and silver spiders, which
contain little to no hypoxanthine. Synthetic β-guanine–hypoxanthine
mixed crystals have the highest value of a′
out of all samples. However, they have significantly lower values
of b, c, and unit cell volume in
comparison to biogenic crystals containing hypoxanthine.To
determine whether the inclusion of hypoxanthine is associated
with an increase in crystal microstrain, line-shape analysis of the
powder-XRD data was performed (Figure S12 and Tables S4–S7). Pseudo-Voigt fitting was used to decouple
Gaussian and Lorzentzian components of the peak profile, which provide
information on average crystallite size and microstrain, respectively.[45] No correlation was found between strain and
hypoxanthine content. However, the microstrain along the [100] direction
is inversely correlated with the thickness of the crystals; thin crystals
from the swim bladder have the highest microstrain, and thick prismatic
crystals from white spider lobata have the lowest
microstrain. In comparison to the other biogenic crystals, the reflections
from the swim bladder are significantly broader, except for the (00l)
reflections, which have very sharp Lorentzian line shapes. Line broadening
of the (100) peak in the swim bladder is consistent with these crystals
being extremely thin plates.To further explore evidence for
the incorporation of purines within
biogenic guanine crystals, solid-state nuclear magnetic resonance
(ss-NMR) experiments were performed. High-resolution 13C NMR spectra of biogenic guanine from the swim bladder are compared
with spectra of polycrystalline synthetic β-guanine and hypoxanthine
standards (Figure ). Figure a also
shows 1H → 13C cross-polarization spectra
(recorded with magic-angle spinning and high-power 1H decoupling)
for the swim bladder and the synthetic β-guanine and hypoxanthine
standards. All lines in the spectra of the β-guanine and hypoxanthine
standards are assigned, with chemical shifts being comparable to previously
reported values.[46,47] The 13C spectrum of
the swim bladder crystals exhibits resonances attributable to the
β-guanine component of the sample. An additional peak at 116
ppm is attributed to the C5′ carbon of hypoxanthine. This peak
has a unique resonance frequency distinct from any peaks characteristic
of guanine. Using a standard line fitting of the C5′/C5 peaks
of hypoxanthine and guanine, we calculate an intensity ratio of 8:92
for C5′:C5. This indicates that ca. 8% of the intensity in
the 13C NMR spectrum of the swim bladder crystals originates
from hypoxanthine (Figure a, inset), in agreement with results from solution-state UV–vis
and HPLC (Figure ).
Furthermore, the 13C resonances for the guanine component
of the swim bladder crystals are shifted downfield with respect to
the 13C resonances in pure synthetic β-guanine, indicating
that they are affected by the presence of the hypoxanthine molecules
inside the crystal.
Figure 5
(a) 13C CPMAS (cross-polarization magic angle
spinning)
spectra of the swim bladder (blue), synthetic β-guanine (orange)
and hypoxanthine (green). Assigned carbons are color-coded on the
basis of the color of the spectrum. Hypoxanthine lines are additionally
marked with a prime (Cn′, n = 2, 4, 5, 6, 8). Inset: enlargement of a deconvolution of the C5/C5′
region of the swim bladder 13C spectrum. The annotated
guanine and hypoxanthine structures correspond to the spectral labeling.
(b) 2D 1H–13C heteronuclear correlation
spectra of the swim bladder (blue) and synthetic β-guanine (red).
1D projections at 141.8 ppm and at 160.8 ppm (marked with vertical
dashed lines) along the carbon chemical shift axis are overlaid on
the 2D spectra (Figure S14).
(a) 13C CPMAS (cross-polarization magic angle
spinning)
spectra of the swim bladder (blue), synthetic β-guanine (orange)
and hypoxanthine (green). Assigned carbons are color-coded on the
basis of the color of the spectrum. Hypoxanthine lines are additionally
marked with a prime (Cn′, n = 2, 4, 5, 6, 8). Inset: enlargement of a deconvolution of the C5/C5′
region of the swim bladder 13C spectrum. The annotated
guanine and hypoxanthine structures correspond to the spectral labeling.
(b) 2D 1H–13C heteronuclear correlation
spectra of the swim bladder (blue) and synthetic β-guanine (red).
1D projections at 141.8 ppm and at 160.8 ppm (marked with vertical
dashed lines) along the carbon chemical shift axis are overlaid on
the 2D spectra (Figure S14).1H NMR spectra for the three samples (Table and Figure S13) show overlapped bands representing the −NH and
−CH protons in guanine and hypoxanthine and a water line at
ca. 5.0 ppm. A line at 0.75 ppm is also observed in the swim bladder
crystals, which is attributed to phospholipid protons originating
from the crystal forming cells. Deconvolution of the swim bladder 1H NMR spectrum into individual computed 1H resonances
(Figure S14) indicates that 19% of the
protons are from water molecules. 2D 1H–13C CP-based heteronuclear correlation spectra for swim bladder and
β-guanine (Figure b) indicate that the 13C resonances due to guanine in
the swim bladder are shifted slightly downfield. They also indicate
a slightly better resolution of the −NH protons from the −CH
protons. Projections taken along the 1H axis at the C2
(160.8 ppm) and C8 (141.8 ppm) chemical shifts (Figure b, dashed lines) are overlaid on the 2D spectra
(Figure b, blue).
They indicate that water protons are involved in polarizing the guanine
carbons in the swim bladder crystals, confirming the presence of water
molecules occluded within the crystals. Deconvolution of these 1D
slices into individual lines (Figure S14) shows the fraction of water protons out of the total polarizing
proton intensity is ca. 7.4%. This demonstrates that a significant
amount of structural water resides within the hypoxanthine-doped swim
bladder crystals. Analogous HETCOR spectra of the synthetic β-guanine
and hypoxanthine standards show no evidence of intracrystalline water.
Table 1
Solid-State NMR Peak Assignments of
the 1H and 13C Lines
atom
swim bladder (ppm)
β-guanine
(ppm)
Δ β-guanine (ppm)
hypoxanthine (ppm)
C2
157.9
157.4
0.5
145.8
C4
156.4
155.5
0.9
149.9
C5 (C5′)
107 (116)
107.1
–0.1
122.8
C6
161
160.4
0.6
159.6
C8
142.2
141.4
0.8
142.4
H1, H9, HN
14.9
14.2
0.7
14.0, 16.7
H2, H8
8.7
7.8
0.9
8.15
Discussion
Guanine
crystals have been found in a huge variety of optical systems
in animals[1] as well as in some nonoptical
“devices” (e.g., the swim bladder[38]). They have also been found widely in many unicellular
eukaryotes, where they mainly function as high-turnover nitrogen reservoirs.[40,48,49]Little is known about how
the substituent guanine crystals in these
systems are formed. Even the most fundamental question, “what are guanine crystals made of?”, has remained
ambiguous. It was shown previously that hypoxanthine and sometimes
adenine are present in guanine-forming tissues. Due to the absence
of solid-state methodologies or adequate crystal purification, these
studies could not decipher whether the “additives” are
present as solutes or as intracrystalline dopants.Our results
show that biogenic guanine crystals are not pure molecular
crystals but are actually solid solutions composed of homogeneous
mixtures of guanine, hypoxanthine and sometimes xanthine. While solid
solutions in synthetic molecular crystals[50−54] and inorganic biominerals[55−57] have been widely
studied, this phenomenon has not been found before in biogenic molecular
crystals. Further work is required to determine whether this observation
is a widespread phenomenon in other biogenic organic crystals such
as isoxanthopterin[58,59] and 7,8-dihydroxanthopterin.[60]The hypoxanthine content of the biological
guanine crystals varies
significantly from none (or trace quantities) in crystals from lobata and pallidus to ca. 12 and ca. 18%
in swim bladder and salmon crystals, respectively. In the last two
cases, it is remarkable that such high amounts of hypoxanthine are
accommodated within the guanine crystals without significantly altering
the crystal structure. In salmon crystals, on average, almost every
unit cell contains one molecule of hypoxanthine. Such doping levels
are rarely observed in synthetic molecular mixed crystals in which
the two pure crystalline phases are not isostructural[61−63] (Figure ). We observe
that, when large amounts of hypoxanthine are included within the guanine
crystal, symmetry breaking occurs and the symmetry-forbidden (001)
peak is present in the powder XRD data. The relatively low intensity
of this reflection suggests random, nonselective occlusion of hypoxanthine
molecules within the β-guanine crystal structure.
Figure 6
Structural
comparison of the packing of pure β-guanine (P21/b, a =
3.63 Å, b = 9.81 Å, c =
18.43 Å, γ = 118.04°), hypoxanthine-doped β-guanine,
and pure monoclinic hypoxanthine (P21/c, a = 3.67 Å, b =
17.91 Å, c = 9.01 Å, β = 107.47°).
(a) H-bonding layer of pure β-guanine. The dashed box shows
the NH2 group participating in two (out of eight) H-bonds.
(b) H-bonding layer of β-guanine with one guanine molecule substituted
by a hypoxanthine molecule. The NH2 group of the guanine
is essentially replaced by a H atom and two H-bonds are lost. (c)
Packing of the planar β-guanine H-bonding layers. (d) Packing
of the nonplanar H-bonding layers of the monoclinic hypoxanthine crystal
structure.[43] Crystal packing of β-guanine
(e) and hypoxanthine (f) viewed perpendicular to the H-bonding layer.
Structural
comparison of the packing of pure β-guanine (P21/b, a =
3.63 Å, b = 9.81 Å, c =
18.43 Å, γ = 118.04°), hypoxanthine-doped β-guanine,
and pure monoclinic hypoxanthine (P21/c, a = 3.67 Å, b =
17.91 Å, c = 9.01 Å, β = 107.47°).
(a) H-bonding layer of pure β-guanine. The dashed box shows
the NH2 group participating in two (out of eight) H-bonds.
(b) H-bonding layer of β-guanine with one guanine molecule substituted
by a hypoxanthine molecule. The NH2 group of the guanine
is essentially replaced by a H atom and two H-bonds are lost. (c)
Packing of the planar β-guanine H-bonding layers. (d) Packing
of the nonplanar H-bonding layers of the monoclinic hypoxanthine crystal
structure.[43] Crystal packing of β-guanine
(e) and hypoxanthine (f) viewed perpendicular to the H-bonding layer.Powder XRD analysis shows that, for both biogenic
and synthetic
mixed crystals, the inclusion of hypoxanthine is correlated with an
increase in the d spacing between H-bonded guanine
layers. The out-of-plane[64] NH2 group in the optimized geometry of the guanine molecule becomes
planar when it is inside the crystal due to its participation in H-bonding.
In the β-guanine crystal structure, each molecule is bound to
four neighboring guanine molecules by eight hydrogen bonds. Thus,
the loss of two out of eight H-bonds (Figure a,b) upon the inclusion of every hypoxanthine
molecule may be responsible for the loss in planarity of the guanine
layers (Figure c,e).
A second explanation is the preference of hypoxanthine to adopt a
slightly corrugated H-bond arrangement (Figure d), as observed in the pure monoclinic phase
of hypoxanthine (Figure d,f).[43]Additionally, the crystallization
of synthetic β-guanine–hypoxanthine
mixed crystals in the β-guanine phase (Figure S10h) agrees with a recent finding that guanine preferentially
crystallizes as the β-polymorph[65] when it forms solid
solutions with hypoxanthine and xanthine. This suggests that purine
additives may stabilize the metastable β-polymorph. A similar
effect was recently observed when the metastable benzamide form III
was stabilized upon forming solid solutions with the nonisostructural
additive nicotinamide.[63] Since the replacement
of guanine by hypoxanthine involves replacement of an −NH2 group by H on the N2 of guanine (Figure b), we expect that hypoxanthine inclusion
should result in lattice contraction within the bc plane and a decrease in the unit cell volume. As predicted, the b and c axes and unit cell volume of synthetic
β-guanine–hypoxanthine mixed crystals are lower than
those of the synthetic β-guanine standard. Surprisingly, in
biogenic crystals, hypoxanthine inclusion is instead associated with
lattice expansion along the b axis and increased
unit cell volume. We cannot fully rationalize this behavior, but our
ss-NMR analysis suggests that, in the presence of hypoxanthine, water
is included in the crystal structure. This structural water may compensate
for the missing H-bonds, giving rise to unit cell expansion. Another
possibility is the presence of nonpurine additives in the crystal.Interestingly, line-shape analysis of the (100) peak (corresponding
to π–π stacking) shows a correlation between the
thickness of the crystals and the microstrain along the [100] direction.
The extremely thin swim bladder crystals have the highest microstrain,
followed by crystals from salmon (ca. 25 nm thick) and the silver
spider (ca. 20–30 nm thick). Thick prismatic crystals from
the white spider lobata exhibit the lowest microstain.
Previous work shows that growth rates of crystals are impeded along
directions of high microstrain,[66] suggesting
that the thickness of guanine crystals studied in this work may be
related to strain.No correlation was found between biogenic
crystal morphology (in
particular, thickness), and hypoxanthine content. The observation
of similar amounts of hypoxanthine in thick (>200 nm) crystals
from lobata and pallidus and thin
(ca. 20 nm)
crystals from deserticola contradicts the hypothesis
that hypoxanthine inhibits growth along the stacking direction. The
large variation in hypoxanthine content within the thin crystals also
shows that intracrystalline dopants do not directly, or proportionally,
dictate morphology. For example, salmon and labrax contain similar
(ca. 25 nm thick) elongated hexagonal plates but very different hypoxanthine
contents (13–18% and 0–6%, respectively). Moreover,
the extremely thin crystals from the swim bladder contain less hypoxanthine
(8–12%) in comparison to the thicker salmon crystals. Interestingly,
the amount of hypoxanthine detected in crystals is often found to
vary across a certain range between measurements. For example, in
labrax, the hypoxanthine content varies between 0 and 6%, indicating
that the crystal composition is not “genetically fixed”
and there may be variation within individuals of the same species
or even temporal variation in one individual. Our results do not preclude
the possibility that nonoccluded purine additives influence the crystal
morphology. However, it seems likely that organisms control crystal
morphology by other, as yet unknown, strategies that are independent
of purine chemistry.This raises the question; what function,
if any, does intracrystalline
hypoxanthine have in biogenic guanine materials? We hypothesize that
the ability of guanine crystals to accommodate high quantities of
“foreign” purine molecules enables organisms to build
physiologically “cheaper” crystals, without impeding
optical functionality. Guanine and hypoxanthine are products of related
nucleotide degradation pathways. In fish, they are both directly degraded
to xanthine[67,68] before being catabolized to other
nitrogenous waste products, which could explain the presence of xanthine
in some salmon crystals. Conversely, in spiders, guanine is the end
product of the nucleotide degradation pathway[68−70] and is excreted
as waste or deposited in the guanophores.[68] It has been suggested that hypoxanthine production has been lost
or impeded in spiders through evolution[70]—consistent with the finding that hypoxanthine
is a minor component of spider guanine crystals. Thus, it seems that
organisms “make use of what they have”, building their
crystals from mixtures of structurally similar purines available from
nitrogen metabolism. We suspect that the purine composition of “guanine”
crystals simply reflects the natural metabolism of
the organism. Previous studies showed that, by preferentially orienting
the (100) face of guanine (parallel to the high refractive index,
H-bonded plane) toward the incident light, the reflectivity is enhanced.[25,71] Since hypoxanthine can be incorporated without disturbing the crystal
structure or morphology (and thus the resulting optimized optical
properties), organisms can “freely” vary crystal composition
according to their metabolic profile. The refractive index of crystals
is governed by the polarizability of the substituent molecules.[10] Since hypoxanthine and guanine have very similar
polarizabilities,[64] hypoxanthine doping
is unlikely to substantially change the refractive index or degrade
the optical functionality of the crystals.
Conclusions
Since
its discovery in silvery fish scales over 130 years ago,[72] most studies have treated biogenic guanine as
a pure crystalline phase. Our results show that “guanine”
crystals are complex materials, which exist as solid solutions of
guanine and other purines. We conclude that intracrystalline dopants
do not dictate the morphology of biogenic guanine crystals but that
organisms use other “strategies” to control crystallization.
The remarkable flexibility of guanine crystals to host purine molecules enables animals to efficiently build crystals from
structurally similar purines available in the crystal-forming cells.
The exceptional levels of doping in biogenic guanine offer inspiration
for engineering mixed molecular crystals that incorporate multiple
functionalities in a single material.
Authors: Benjamin A Palmer; Venkata Jayasurya Yallapragada; Nathan Schiffmann; Eyal Merary Wormser; Nadav Elad; Eliahu D Aflalo; Amir Sagi; Steve Weiner; Lia Addadi; Dan Oron Journal: Nat Nanotechnol Date: 2020-01-13 Impact factor: 39.213
Authors: Anne Jantschke; Iddo Pinkas; Anna Hirsch; Nadav Elad; Andreas Schertel; Lia Addadi; Steve Weiner Journal: J Struct Biol Date: 2019-04-13 Impact factor: 2.867
Authors: Peter Mojzeš; Lu Gao; Tatiana Ismagulova; Jana Pilátová; Šárka Moudříková; Olga Gorelova; Alexei Solovchenko; Ladislav Nedbal; Anya Salih Journal: Proc Natl Acad Sci U S A Date: 2020-12-08 Impact factor: 12.779