| Literature DB >> 35252617 |
Hyacinthe Gbètoyénonmon Wouyou1, Bruno Enagnon Lokonon1, Rodrigue Idohou1,2, Alban Gandonou Zossou-Akete1, Achille Ephrem Assogbadjo3, Romain Glèlè Kakaï1.
Abstract
Caesalpinia bonduc (L.) Roxb is a medicinal plant with high therapeutic values but declared extinct in the wild in Benin. This study explored the potential distribution and climatic suitability of the species under the present-day and future conditions in Benin, based on two Representative Concentration Pathways (RCP4.5 and RCP8.5) at the 2055-time horizon. The occurrence data were recorded in the distribution area of the species in Benin. These data were supplemented with those from the Global Biodiversity Information Facility (GBIF, www.gbif.org) website and the literature. A total of 23 environmental variables (15 bioclimatic data and 8 biophysical data) were used. The Bioclimatic variables for temperature and humidity were downloaded from Africlim site at 1 km resolution. The biophysical variables concern population, elevation, slope, landcover, wetland, distance to river, soil and distance to dwellings data that are downloaded respectively from DIVA-GIS, ISRIC and SEDAC website at different resolution. A correlation test has been applied to eliminate the highly correlated variables (r ≥ 0.9) using Pearson correlation coefficient. Species distribution modelling data were processed using five algorithms namely Random Forest (RF), Boosted Regression Trees (BRT), Maximum entropy (MAXENT), Generalized Linear Models (GLM) and Generalized Additive Models (GAM). The results showed that all models performed well with the area under the curve (AUC) values greater than 0.9. The RF, GLM, and GAM models predicted an increase in the suitable areas for the cultivation of the species. BRT and MaxEnt showed a substantial decrease in the suitable areas based on the two scenarios but this reduction is more observed with the MaxEnt model. These results show that climate change and human pressures will have significant effects on the distribution of C. bonduc throughout Benin. Sustainable management measures are necessary for C. bonduc and should be integrated in development policies to preserve the population of the species from total extinction in Benin.Entities:
Keywords: Conservation; Cultivation; Endangered species; Modelling; West Africa
Year: 2022 PMID: 35252617 PMCID: PMC8891960 DOI: 10.1016/j.heliyon.2022.e09022
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
Figure 1Geographic distribution of C. bonduc occurrences in Benin.
Figure 2Picture showing the first author recording occurrence data of C. bonduc in northern Benin.
Characteristics of the species distribution model considered.
| Methods | Procedure | Data type | Reference |
|---|---|---|---|
| Generalized Additive Model (GAM) | Regression analysis | Presence-Absence | |
| Random Forest (RF) | Regression analysis | Presence-Absence | |
| Generalized Linear Model (GLM) | Regression analysis | Presence-Absence | |
| Boosted regression trees (BRT) | Regression analysis | Presence-Absence | |
| MAXENT | Maximum Entropy | Presence/background |
Performance of the models based on evaluation metrics.
| METHODS | AUC | COR | TSS | DEVIANCE |
|---|---|---|---|---|
| RF | 0.98 | 0.89 | 0.9 | 0.29 |
| BRT | 0.97 | 0.84 | 0.86 | 0.59 |
| MaxEnt | 0.96 | 0.8 | 0.84 | 0.48 |
| GLM | 0.93 | 0.73 | 0.71 | 0.58 |
| GAM | 0.96 | 0.82 | 0.84 | 0.49 |
RF: Random Forest; GLM: Generalized Linear Model; GAM: Generalized Additive Model; MAXENT: Maximum Entropy; BRT: Boosted regression trees; COR: Correlation AUC: Received Operational Characteristics, TSS: True Skill Statistics.
Figure 3Contribution of the selected variables to the models. Bio15: Seasonality of precipitation, Bio 17: Precipitation of the driest quarter, Bio2: Daytime mid-range, Sttlement_dis: Distance from dwellings.
Variation of suitable areas (in km2) of the present-day distribution of habitat for C. bonduc in Benin.
| RF | BRT | MAXENT | GLM | GAM | |
|---|---|---|---|---|---|
| Unsuitable area | 86158.4 (74.68 %) | 86506.29 (74.9 %) | 68374.72 (59.27 %) | 36159.53 (31.34 %) | 72096.72 (62.49 %) |
| Less suitable area | 18347.2 (15.9 %) | 11865.91 (10.28 %) | 26432.15 (22.91 %) | 63645.37 (55.17 %) | 27713.25 (24.02 %) |
| Highly suitable area | 10853.5 (9.4 %) | 16986.92 (14.72 %) | 20552.26 (17.81 %) | 15554.22 (13.48 %) | 15549.17 (13.47 %) |
| Total | 115359.1 (100%) | 115359.1 (100%) | 115359.1 (100%) | 115359.1 (100%) | 115359.1 (100%) |
Figure 4Present-day distribution of the suitable habitats for Caesalpinia bonduc. a) Random Forest model; b) Boosted Regression Trees model; c) Maximum Entropy; d) Generalized Linear Model; e) Generalized Additive Model.
Variation of suitable areas (in km2) for C. bonduc distribution according to the RCP4.5
| RF | BRT | MAXENT | GLM | GAM | |
|---|---|---|---|---|---|
| Unsuitable area | 61204.54 (53.05 %) | 89569.42 (77.64 %) | 75831.76 (65.73 %) | 34396.38 (29.81 %) | 76868.74 (66.63 %) |
| Less suitable area | 36733.17 (31.84 %) | 16390.34 (14.20 %) | 38747.32 (33.58 %) | 63596.92 (55.12 %) | 22695.62 (19.67 %) |
| Highly suitable area | 17421.42 (15.10 %) | 9399.36 (8.14 %) | 780.05 (0.67 %) | 17365.83 (15.05 %) | 15794.77 (13.69 %) |
| Total | 115359.1 (100%) | 115359.1 (100%) | 115359.1 (100%) | 115359.1 (100%) | 115359.1 (100%) |
Figure 5Suitable areas for Caesalpinia bonduc conservation according to the RCP4.5 scenario.
Variation of suitable areas (in km2) for C. bonduc distribution according to the RCP8.5 scenario.
| RF | BRT | MAXENT | GLM | GAM | |
|---|---|---|---|---|---|
| Unsuitable area | 41297.23 (35.79 %) | 85887.35 (74.45 %) | 97493.77 (84.51 %) | 34238.01 (29.67 %) | 64577.46 (55.97 %) |
| Less suitable area | 48045.6 (41.64 %) | 16295.15 (14.12 %) | 17050.77 (14.78 %) | 62918.80 (54.54 %) | 30755.58 (26.66 %) |
| Highly suitable area | 26016.31 (22.55 %) | 13176.63 (11.42 %) | 814.59 (0.70 %) | 18202.32 (15.77 %) | 20026.09 (17.35 %) |
| Total | 115359.1 (100%) | 115359.1 (100%) | 115359.1 (100%) | 115359.1 (100%) | 115359.1 (100%) |
Figure 6Suitable areas for Caesalpinia bonduc conservation according to the RCP8.5 scenario.
Figure 7Dynamic of habitats for C. bonduc.