| Literature DB >> 35252394 |
Carlo Maj1, Erika Salvi2, Lorena Citterio3, Oleg Borisov1, Marco Simonini3, Valeria Glorioso4, Cristina Barlassina5, Nicola Glorioso6, Lutgarde Thijs7, Tatiana Kuznetsova7, Francesco P Cappuccio8, Zhen-Yu Zhang7, Jan A Staessen9,10, Daniele Cusi11,12, Chiara Lanzani3, Paolo Manunta3.
Abstract
INTRODUCTION ANDEntities:
Keywords: genome-wide association studies; hypertension; pathway analysis; polygenic risk score; prediction
Year: 2022 PMID: 35252394 PMCID: PMC8888857 DOI: 10.3389/fcvm.2022.814502
Source DB: PubMed Journal: Front Cardiovasc Med ISSN: 2297-055X
Demographic and phenotypic characteristics of target and validation cohorts.
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| Male | 432 (77.0%) | 426 (58.3%) | <0.001 | 801 (62.4%) | 575 (59.5%) | 0.499 |
| Age (Years) | 45.5 (±7.97) | 59.5 (±6.1) | <0.001 | 49.6 (±9.8) | 62.6 (±9.96) | <0.001 |
| BMI (kg/m2) | 26.4 (±3.02) | 25.1 (±3.3) | <0.001 | 27.6 (±4.3) | 26.1 (±3.8) | <0.001 |
| Diastolic BP (mmHg) | 96.5 (±5.9) | 79.5 (±4.6) | <0.001 | 98.8 (±9.7) | 76.1 (±6.8) | <0.001 |
| Systolic BP (mmHg) | 148.6 (±8.93) | 124.9 (±6.8) | <0.001 | 154.8 (±14.9) | 122.5 (±10.04) | <0.001 |
Continuous variables are presented as mean and standard deviation, categorical variables as numbers and percentages. Between-groups comparisons of continuous variables were performed using t-test. Categorical data were compared between groups using the chi-squared test.
Figure 1Workflow of the analysis. Hypertension-PRS based on a reference hypertension-GWAS performed on the UK Biobank were calculated in the Italian hypertension (HT) case/control target cohort from the HYPERGENES dataset. The models were then validated in an independent European-wide HT case/control cohort within the HYPERGENES dataset. The analysis was performed both for genome-wide PRS and for pathway-specific PRS according to 186 KEGG-pathways.
Figure 2Polygenic risk score analysis. Bar plot displaying the model fit of the PRS at P-value threshold. In the x-axis are reported the P-value thresholds used to filter for the variants to be included in the PRS computation. Above the bar are reported the P-values of the logistic association test.
OR for hypertension across PRS deciles.
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| 1 | 0.44 | 102 | 28 | 2.85E-03 | 0.32 | 155 | 70 | 1.03E-08 |
| 2 | 0.56 | 96 | 34 | 3.4E-02 | 0.51 | 132 | 93 | 4.73E-04 |
| 3 | 0.82 | 85 | 44 | 0.52 | 0.56 | 126 | 98 | 3.35E-03 |
| 4 | 1 | 79 | 50 | 1 | 0.69 | 114 | 110 | 0.071 |
| 5 | 1 | 79 | 50 | 1 | 1 | 94 | 130 | 1 |
| 6 | 1.17 | 74 | 55 | 0.61 | 1.03 | 92 | 132 | 0.92 |
| 7 | 1.76 | 61 | 68 | 3.34E-03 | 1.11 | 88 | 136 | 0.63 |
| 8 | 1.70 | 62 | 67 | 4.51E-02 | 1.39 | 76 | 147 | 0.096 |
| 9 | 2.18 | 54 | 75 | 2.72E-03 | 2.21 | 55 | 169 | 1.31E-04 |
| 10 | 3.62 | 39 | 90 | 9.13E-07 | 3.21 | 41 | 183 | 6.47E-08 |
Number of controls and cases across PRS decile and corresponding OR and P-values in the target and in the validation cohort.
Figure 3PRS stratification for hypertension risk. ORs between hypertensive cases and normotensive controls by grouping the samples according to the PRS deciles (A: target cohort; B: validation cohort). The points represent the OR point estimates and the lines represent the corresponding standard errors.
Figure 4Prediction of hypertension. Target (A) and validation (B) ROC of the full model including PRS and covariates (darker line) and of the covariates-only (i.e., BMI, sex and 4PC) model (lighter line).
Significant pathway-specific PRS in both target and validation cohorts.
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| Calcium signaling | 0.001 | 4.40 | 0.0012 | 4.32 | 1,669 |
| VEGF signaling | 0.021 | 3.17 | 0.0035 | 3.96 | 439 |
| Focal adhesion | 0.0097 | 3.54 | 0.014 | 3.46 | 1,575 |
| Phosphatidylinositol signaling system | 0.01 | 3.43 | 0.027 | 3.10 | 758 |
| Huntington's disease | 0.037 | 2.91 | 0.027 | 3.12 | 799 |
| MTOR signaling | 0.045 | 2.78 | 0.033 | 2.95 | 278 |
| Inositol phosphate metabolism | 0.01 | 3.45 | 0.0349 | 2.94 | 439 |
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