Literature DB >> 35249811

Seminars in cell and development biology on histone variants remodelers of H2A variants associated with heterochromatin.

Frédéric Berger1, Kathrin Muegge2, Eric J Richards3.   

Abstract

Variants of the histone H2A occupy distinct locations in the genome. There is relatively little known about the mechanisms responsible for deposition of specific H2A variants. Notable exceptions are chromatin remodelers that control the dynamics of H2A.Z at promoters. Here we review the steps that identified the role of a specific class of chromatin remodelers, including LSH and DDM1 that deposit the variants macroH2A in mammals and H2A.W in plants, respectively. The function of these remodelers in heterochromatin is discussed together with their multiple roles in genome stability.
Copyright © 2022 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Chromatin; Epigenetics; Histone variants; Remodelers; Transposons

Year:  2022        PMID: 35249811      PMCID: PMC9440159          DOI: 10.1016/j.semcdb.2022.02.026

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.499


  161 in total

1.  Gene duplication and hypermutation of the pathogen Resistance gene SNC1 in the Arabidopsis bal variant.

Authors:  Hankuil Yi; Eric J Richards
Journal:  Genetics       Date:  2009-09-21       Impact factor: 4.562

Review 2.  Cytosine methylation and the ecology of intragenomic parasites.

Authors:  J A Yoder; C P Walsh; T H Bestor
Journal:  Trends Genet       Date:  1997-08       Impact factor: 11.639

3.  DDM1 (decrease in DNA methylation) genes in rice (Oryza sativa).

Authors:  Hiromi Higo; Muhammad Tahir; Kazuya Takashima; Asuka Miura; Koichi Watanabe; Akemi Tagiri; Masashi Ugaki; Ryuji Ishikawa; Mitsugu Eiguchi; Nori Kurata; Takuji Sasaki; Eric Richards; Makoto Takano; Naoki Kishimoto; Tetsuji Kakutani; Yoshiki Habu
Journal:  Mol Genet Genomics       Date:  2012-08-24       Impact factor: 3.291

4.  Involvement of the Arabidopsis SWI2/SNF2 chromatin remodeling gene family in DNA damage response and recombination.

Authors:  Hezi Shaked; Naomi Avivi-Ragolsky; Avraham A Levy
Journal:  Genetics       Date:  2006-03-17       Impact factor: 4.562

5.  Replication Stress Shapes a Protective Chromatin Environment across Fragile Genomic Regions.

Authors:  Jeongkyu Kim; David Sturgill; Robin Sebastian; Simran Khurana; Andy D Tran; Garrett B Edwards; Alex Kruswick; Sandra Burkett; Eri K Hosogane; William W Hannon; Urbain Weyemi; William M Bonner; Karolin Luger; Philipp Oberdoerffer
Journal:  Mol Cell       Date:  2017-12-14       Impact factor: 17.970

6.  LSH and G9a/GLP complex are required for developmentally programmed DNA methylation.

Authors:  Kevin Myant; Ausma Termanis; Arvind Y M Sundaram; Tristin Boe; Chao Li; Cara Merusi; Joe Burrage; Jose I de Las Heras; Irina Stancheva
Journal:  Genome Res       Date:  2010-12-13       Impact factor: 9.043

7.  Genome-wide negative feedback drives transgenerational DNA methylation dynamics in Arabidopsis.

Authors:  Tasuku Ito; Yoshiaki Tarutani; Taiko Kim To; Mohamed Kassam; Evelyne Duvernois-Berthet; Sandra Cortijo; Kazuya Takashima; Hidetoshi Saze; Atsushi Toyoda; Asao Fujiyama; Vincent Colot; Tetsuji Kakutani
Journal:  PLoS Genet       Date:  2015-04-22       Impact factor: 5.917

8.  Histone H2A variants confer specific properties to nucleosomes and impact on chromatin accessibility.

Authors:  Akihisa Osakabe; Zdravko J Lorkovic; Wataru Kobayashi; Hiroaki Tachiwana; Ramesh Yelagandula; Hitoshi Kurumizaka; Frédéric Berger
Journal:  Nucleic Acids Res       Date:  2018-09-06       Impact factor: 16.971

9.  Structural basis of specific DNA binding by the transcription factor ZBTB24.

Authors:  Ren Ren; Swanand Hardikar; John R Horton; Yue Lu; Yang Zeng; Anup K Singh; Kevin Lin; Luis Della Coletta; Jianjun Shen; Celine Shuet Lin Kong; Hideharu Hashimoto; Xing Zhang; Taiping Chen; Xiaodong Cheng
Journal:  Nucleic Acids Res       Date:  2019-09-19       Impact factor: 16.971

10.  Loss of ZBTB24 impairs nonhomologous end-joining and class-switch recombination in patients with ICF syndrome.

Authors:  Angela Helfricht; Peter E Thijssen; Magdalena B Rother; Rashmi G Shah; Likun Du; Sanami Takada; Mélanie Rogier; Jacques Moritz; Hanna IJspeert; Chantal Stoepker; Monique M van Ostaijen-Ten Dam; Vincent Heyer; Martijn S Luijsterburg; Anton de Groot; Rianca Jak; Gwendolynn Grootaers; Jun Wang; Pooja Rao; Alfred C O Vertegaal; Maarten J D van Tol; Qiang Pan-Hammarström; Bernardo Reina-San-Martin; Girish M Shah; Mirjam van der Burg; Silvère M van der Maarel; Haico van Attikum
Journal:  J Exp Med       Date:  2020-11-02       Impact factor: 14.307

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