| Literature DB >> 35242102 |
Lina Zheng1, Xin Zhang1, Liping Liu1, Yuehua Pu1.
Abstract
BACKGROUND: Aneurysmal subarachnoid hemorrhage (aSAH) is a life-threatening condition with high disability and mortality. MicroRNAs (miRNAs) are reported to play a modulating role in aSAH. We investigated specific plasma microRNAs (miRNAs) associated with aSAH and gained comprehensive insight into its pathological mechanisms.Entities:
Keywords: genes; intracranial aneurysm; microRNAs; microarray; subarachnoid hemorrhage
Year: 2022 PMID: 35242102 PMCID: PMC8886220 DOI: 10.3389/fneur.2022.842888
Source DB: PubMed Journal: Front Neurol ISSN: 1664-2295 Impact factor: 4.003
Figure 1Study flow diagram. aSAH indicates aneurysmal subarachnoid hemorrhage.
General characteristics of patients with aneurysmal subarachnoid hemorrhage and controls.
|
|
|
| |||||||
|---|---|---|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
|
|
| |
| Age, years | 46.80 ± 6.14 | 46.34 ± 7.13 | - | 48.50 ± 9.08 | 47.89 ± 8.83 | 0.653 | 46.18 ± 7.64 | 47.60 ± 7.53 | 0.637 |
| Sex, male | 2 (40.0) | 2 (40.0) | - | 8 (40.0) | 6 (30.0) | 0.507 | 26 (65.0) | 18 (60.0) | 0.668 |
|
| |||||||||
| Hypertension | 2 (40.0) | 1 (20.0) | - | 10 (50.0) | 8 (40.0) | 0.525 | 13 (32.5) | 6 (20.0) | 0.244 |
| Diabetes mellitus | 0 (0.0) | 0 (0.0) | - | 2 (10.0) | 1 (5.0) | 1.000 | 0 (0.0) | 0 (0.0) | - |
| Hyperlipidemia | 0 (0.0) | 1 (20.0) | - | 1 (5.0) | 1 (5.0) | 1.000 | 2 (5.0) | 2 (6.7) | 1.000 |
| Smoking | 1 (20.0) | 2 (40.0) | - | 7 (35.0) | 5 (25.0) | 0.490 | 16 (40.0) | 11 (36.7) | 0.777 |
| Alcoholism | 1 (20.0) | 1 (20.0) | - | 4 (20.0) | 3 (15.0) | 1.000 | 13 (32.5) | 8 (26.7) | 0.598 |
| Time of blood sampling (days after onset) | 3 (2–4) | - | - | 2 (1-3) | - | - | 2 (2-3.5) | - | - |
Values are mean ± standard deviation or number (%); Student's t-tests were used for comparison of continuous variables and χ.
Radiologic and clinical features of patients with aneurysmal subarachnoid hemorrhage.
|
|
|
|---|---|
|
| |
| Number | |
| 1 | 58 (89.2) |
| 2 | 5 (7.7) |
| 3 | 2 (3.1) |
|
| |
| ACom | 29 (39.2) |
| PCom | 16 (21.6) |
| ACA | 4 (5.4) |
| ICA | 7 (9.5) |
| MCA | 15 (20.3) |
| PCA | 0 (0.0) |
| VA | 1 (1.4) |
| BA | 2 (2.7) |
|
| |
| Saccular | 54 (73.0) |
| Irregular | 19 (25.7) |
| Dissecting | 1 (1.4) |
|
| |
| <5 | 42 (56.8) |
| 5–10 | 26 (35.1) |
| 11–25 | 6 (8.1) |
| >25 | 0 (0.0) |
|
| |
| Grade 1 (Minimal symptoms) | 21 (32.3) |
| Grade 2 (Severe headache) | 38 (58.5) |
| Grade 3 (Lethargy) | 5 (7.7) |
| Grade 4 (Hemiparesis or stupor) | 1 (1.5) |
| Grade 5 (Coma, posturing) | 0 (0.0) |
|
| |
| Grade 0 (No blood) | 0 (0.0) |
| Grade 1 (Thin SAH) | 30 (4.6) |
| Grade 2 (Thin SAH and bilateral IVH) | 15 (23.1) |
| Grade 3 (Thick SAH) | 20 (30.8) |
| Grade 4 (Thick SAH and bilateral IVH) | 0 (0.0) |
|
| |
| Good (0-2) | 62 (95.4) |
| Poor (3-6) | 3 (4.6) |
Values are number (%) and median (interquartile range).
aSAH indicates aneurysmal subarachnoid hemorrhage; ACom, anterior communicating artery; PCom, posterior communicating artery; ACA, anterior cerebral artery; ICA, internal carotid artery; MCA, middle cerebral artery; PCA, posterior cerebral artery; VA, vertebral artery; BA, basilar artery and mRS, the modified Rankin Scale.
Plasma miRNAs with significant differences between aSAH patients and controls, as determined by microarray.
|
|
|
|
|
|
|---|---|---|---|---|
| miR-4793-3p | Up | 14.09 | AGCCAGCCAACTCAC | chr3 |
| miR-4436-3p | Up | 4.03 | TTGTCCACTTCTTCCTG | chr2 |
| miR-5010-5p | Up | 3.46 | AATTTTGCTCTGCCATCC | chr17 |
| miR-30c-2-3p | Up | 3.35 | AGAGTAAACAGCCTTCTC | chr6 |
| miR-3190-3p | Up | 3.26 | TCTCTGGCCGTCTACC | chr19 |
| miR-4443 | Up | 2.03 | AAAACCCACGCCTCC | chr3 |
| miR-4449 | Down | −12.36 | TGCCTCGCGCAGC | chr4 |
| miR-31-5p | Down | −8.20 | AGCTATGCCAGCATCTT | chr9 |
| miR-6130 | Down | −4.81 | CATACAATCCACTCCCT | chr21 |
| miR-150-5p | Down | −4.72 | CACTGGTACAAGGGTTGG | chr19 |
| miR-142-3p | Down | −2.55 | TCCATAAAGTAGGAAACACTAC | chr17 |
| miR-20b-5p | Down | −2.44 | CTACCTGCACTATGAGCAC | chrX |
| miR-590-5p | Down | −2.22 | CTGCACTTTTATGAATAAGCTC | chr7 |
| miR-23b-3p | Down | −2.08 | GGTAATCCCTGGCAATG | chr9 |
aSAH indicates aneurysmal subarachnoid hemorrhage.
Figure 2Volcano plot and heatmap expression profiles of differentially expressed miRNAs between aSAH patients and controls in the screening stage. (A) Volcano plot of all miRNAs. The –log (P) of each miRNA is plotted against the log2 ratio of aSAH intensity to normal intensity. The green horizontal line indicates the significance level at P = 0.05. The green vertical line indicates a fold change level >2. miRNAs that were significantly up-regulated or down-regulated in aSAH patients are indicated by red dots. (B) Two-way hierarchical clustering of 14 significant miRNAs. Relatively higher expression levels are represented by red, and relatively lower expression levels are represented by green. miRNAs indicate microRNAs and aSAH, aneurysmal subarachnoid hemorrhage.
Figure 3Relative expression levels of five miRNAs between aSAH patients and controls in the validation stage. (A) miR-23b-3p; (B) miR-590b-5p; (C) miR-20b-5p; (D) miR-142b-3p; (E) miR-29b-3p. Relative expression levels were all significantly lower in aSAH patients than in controls (all P < 0.05). miRNAs indicate microRNAs and aSAH, aneurysmal subarachnoid hemorrhage.
Figure 4Target genes and results of GO and KEGG analyses. (A) 3 targetsbase_venn. Venn diagram of target genes from three databases, TargetScan, PITA, and microRNAorg. (B) GO_barplot. Enrichment P-value histograms for each GO branch (sorted by P-value). (C) KEGG_dotplot. A bubble map for the result of KEGG branch enrichment (each KEGG branch is sorted by the P-value, taking the first 20 KEGG results). The abscissa is the ratio of the number of genes associated with the KEGG term in the target gene to the number of genes enriched in the KEGG database. The ordinate is the KEGG term. The color scale represents the P-value; when the color tends toward red, the P-value is smaller. The size of the circle indicates the number of differentially expressed genes in the pathway: the larger the point, the more significant in the gene. GO indicates gene ontology; KEGG, Kyoto Encyclopedia of Genes and Genomes; TGF, transforming growth factor and AMPK, AMP-activated protein kinase.
Target gene list obtained from three databases.
| TGM2 | EREG | EDN1 | COL4A1 | CTNND1 | VIM | PDE4B | ME1 |
| KRT10 | FNTB | VAMP3 | CPEB3 | CCNT2 | CUL5 | ZNF217 | LZTFL1 |
| PLEKHA1 | GAB1 | TMEM59 | GTF2A1 | CHIC1 | PDE8A | EHF | SYPL1 |
| NCK2 | MARCKS | LRRC32 | C9orf72 | CLTA | SKI | MMD | NAV3 |