Literature DB >> 35237295

Integrated Analysis of ceRNA Network to Reveal Potential Prognostic Biomarkers for Glioblastoma.

Ruifei Liu1, Zhengzheng Gao2, Qiwei Li3, Qiang Fu3, Dongwei Han3, Jixi Wang4, Ji Li4, Ying Guo5, Yuchen Shi3.   

Abstract

Glioblastoma (GBM), originating in the brain, is a universally aggressive malignant tumor with a particularly poor prognosis. Therefore, insight into the critical role of underlying genetic mechanisms is essential to developing new therapeutic approaches. This study aims to identify potential markers with clinical and prognostic significance in GBM. To this end, increasing numbers of differentially expressed RNA have been identified used to construct competitive endogenous RNA networks for prognostic analysis via comparison and analysis of RNA expression levels of tumor and normal tissues in glioblastoma. This analysis demonstrated that the RNA expression patterns of normal and tumor samples were significantly different. Thus, the resulting differentially expressed RNAs were used to construct competitive endogenous RNA (competing endogenous RNA, ceRNA) networks. The functional enrichment indicated mRNAs in the network are critically involved in a variety of biological functions. Additionally, the prognostic analysis suggested 27 lncRNAs, including LOXL1-AS1, AL356414.1, etc., were significantly associated with patient survival. Given the prognostic significance of these 27 lncRNAs in GBM, we sought to classify the samples. Importantly, Kaplan-Meier analysis revealed that survival times varied significantly among the different categories. Overall, these results identify that the candidate lncRNAs are potential prognostic markers of GBM and its corresponding mRNAs may be a potential target for therapy.
Copyright © 2022 Liu, Gao, Li, Fu, Han, Wang, Li, Guo and Shi.

Entities:  

Keywords:  ceRNA; glioblastoma; lncRNA; network; prognostic biomarker

Year:  2022        PMID: 35237295      PMCID: PMC8882732          DOI: 10.3389/fgene.2021.803257

Source DB:  PubMed          Journal:  Front Genet        ISSN: 1664-8021            Impact factor:   4.599


  35 in total

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8.  Construction of a disease-specific lncRNA-miRNA-mRNA regulatory network reveals potential regulatory axes and prognostic biomarkers for hepatocellular carcinoma.

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9.  starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.

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10.  Prognostic value and immune cell infiltration of hypoxic phenotype-related gene signatures in glioblastoma microenvironment.

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Journal:  J Cell Mol Med       Date:  2020-10-03       Impact factor: 5.295

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