Literature DB >> 35230694

Single-Cell Sequencing Technologies in Precision Oncology.

David T Melnekoff1, Alessandro Laganà2.   

Abstract

Single-cell sequencing technologies are revolutionizing cancer research and are poised to become the standard for translational cancer studies. Rapidly decreasing costs and increasing throughput and resolution are paving the way for the adoption of single-cell technologies in clinical settings for personalized medicine applications. In this chapter, we review the state of the art of single-cell DNA and RNA sequencing technologies, the computational tools to analyze the data, and their potential application to precision oncology. We also discuss the advantages of single-cell over bulk sequencing for the dissection of intra-tumor heterogeneity and the characterization of subclonal cell populations, the implementation of targeted drug repurposing approaches, and describe advanced methodologies for multi-omics data integration and to assess cell signaling at single-cell resolution.
© 2022. Springer Nature Switzerland AG.

Entities:  

Keywords:  CNV; Cell-cell signaling; Drug repurposing; Intra-tumor heterogeneity; Pathway analysis; SNV; Single-cell sequencing; scDNA-seq; scRNA-seq

Mesh:

Year:  2022        PMID: 35230694     DOI: 10.1007/978-3-030-91836-1_15

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  52 in total

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Journal:  J Mol Diagn       Date:  2015-03-20       Impact factor: 5.568

3.  Single cell sequencing reveals heterogeneity within ovarian cancer epithelium and cancer associated stromal cells.

Authors:  Boris J Winterhoff; Makayla Maile; Amit Kumar Mitra; Attila Sebe; Martina Bazzaro; Melissa A Geller; Juan E Abrahante; Molly Klein; Raffaele Hellweg; Sally A Mullany; Kenneth Beckman; Jerry Daniel; Timothy K Starr
Journal:  Gynecol Oncol       Date:  2017-01-19       Impact factor: 5.482

4.  Metapopulation dynamics and spatial heterogeneity in cancer.

Authors:  Isabel González-García; Ricard V Solé; José Costa
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-26       Impact factor: 11.205

5.  Intratumor heterogeneity of K-ras2 mutations in colorectal adenocarcinomas: association with degree of DNA aneuploidy.

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Journal:  Am J Pathol       Date:  1996-07       Impact factor: 4.307

6.  Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing.

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Journal:  Nat Biotechnol       Date:  2013-10-20       Impact factor: 54.908

7.  Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing.

Authors:  Peter J Campbell; Erin D Pleasance; Philip J Stephens; Ed Dicks; Richard Rance; Ian Goodhead; George A Follows; Anthony R Green; P Andy Futreal; Michael R Stratton
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-22       Impact factor: 11.205

8.  Molecular definition of breast tumor heterogeneity.

Authors:  Michail Shipitsin; Lauren L Campbell; Pedram Argani; Stanislawa Weremowicz; Noga Bloushtain-Qimron; Jun Yao; Tatiana Nikolskaya; Tatiana Serebryiskaya; Rameen Beroukhim; Min Hu; Marc K Halushka; Saraswati Sukumar; Leroy M Parker; Karen S Anderson; Lyndsay N Harris; Judy E Garber; Andrea L Richardson; Stuart J Schnitt; Yuri Nikolsky; Rebecca S Gelman; Kornelia Polyak
Journal:  Cancer Cell       Date:  2007-03       Impact factor: 31.743

9.  Integrated genomic profiling expands clinical options for patients with cancer.

Authors:  Nike Beaubier; Martin Bontrager; Robert Huether; Catherine Igartua; Denise Lau; Robert Tell; Alexandria M Bobe; Stephen Bush; Alan L Chang; Derick C Hoskinson; Aly A Khan; Emily Kudalkar; Benjamin D Leibowitz; Ariane Lozachmeur; Jackson Michuda; Jerod Parsons; Jason F Perera; Ameen Salahudeen; Kaanan P Shah; Timothy Taxter; Wei Zhu; Kevin P White
Journal:  Nat Biotechnol       Date:  2019-09-30       Impact factor: 68.164

10.  The impact of intratumoral metabolic heterogeneity on postoperative recurrence and survival in resectable esophageal squamous cell carcinoma.

Authors:  Xinzhe Dong; Xiaorong Sun; Xianguang Zhao; Wanqi Zhu; Lu Sun; Yong Huang; Wenwu Li; Honglin Wan; Ligang Xing; Jinming Yu
Journal:  Oncotarget       Date:  2017-02-28
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  1 in total

1.  Identification of a novel histone phosphorylation prognostic signature in hepatocellular carcinoma based on bulk and single-cell RNA sequencing.

Authors:  Lei Fan; Ling Xu; Shan Tian; Xin Zheng
Journal:  Front Endocrinol (Lausanne)       Date:  2022-08-31       Impact factor: 6.055

  1 in total

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