Literature DB >> 35230627

Exploring the Potential Antidepressant Mechanisms of Pinellia by Using the Network Pharmacology and Molecular Docking.

Yu-Gang Xiao1, Han-Biao Wu1, Ji-Sheng Chen1, Xiong Li2,3, Zhi-Kun Qiu4.   

Abstract

About 350 million people worldwide suffered from depression, but less than half of the patients received effective and regular treatments. Traditional Chinese Medicine (TCM) such as pinellia has been proven effective for antidepressant treatment with fewer side effects. However, the exact mechanisms remain unclear. Herein, we use the methods of network pharmacology and molecular docking to analyze the effective monomer components of pinellia and reveal the involved signaling pathways to produce antidepressant effects. TCMSP, BATMAN-TCM, and TCMID databases were utilized to analyze the bioactive ingredients and target genes derived from pinellia via the screening the molecular weight (MW), oral bioavailability (OB), blood-brain barrier (BBB) and drug similarity (DL). OMIM, TTD, DisGeNET, GeneCards and DrugBank databases were used to obtain key genes of depression. Then, the networks of protein-protein interaction (PPI) and "medicine-ingredients-targets-pathways" were built. The target signaling pathways were enriched by GO and KEGG by using R language. Furthermore, bioactive ingredients binding of the targets were verified by molecular docking. Nine active monomer ingredients and 96 pivotal gene targets were selected from pinellia. 10,124 disease genes and 87 drug-disease intersecting genes were verified. GO analysis proposed that the receptor activity of neurotransmitter, postsynaptic neurotransmitter, G protein-coupled neurotransmitter, and acetylcholine through the postsynaptic membrane could be modulated by pinellia. KEGG pathway analysis revealed that pinellia influenced depression-related neural tissue interaction, cholinergic synapse, serotonin activated synapse and calcium signaling pathway. Besides, the reliability and accuracy of results obtained from the indirect network pharmacology were validated by molecular docking. The bioactive components of pinellia made significant antidepressant effects by regulating the key target genes/proteins in the pathophysiology of depression.
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Depression; Molecular docking,TCM; Network Pharmacology; Pinellia

Mesh:

Substances:

Year:  2022        PMID: 35230627     DOI: 10.1007/s11011-022-00930-9

Source DB:  PubMed          Journal:  Metab Brain Dis        ISSN: 0885-7490            Impact factor:   3.584


  52 in total

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Authors:  X Chen; Z L Ji; Y Z Chen
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  The four-year course of major depressive disorder: the role of staging and risk factor determination.

Authors:  Lynn Boschloo; Robert A Schoevers; Aartjan T F Beekman; Johannes H Smit; Albert M van Hemert; Brenda W J H Penninx
Journal:  Psychother Psychosom       Date:  2014-08-06       Impact factor: 17.659

3.  Evidence for intact 5-HT1A receptor-mediated feedback inhibition following sustained antidepressant treatment in a rat model of depression.

Authors:  Jessica A Babb; Sofia E Linnros; Kathryn G Commons
Journal:  Neuropharmacology       Date:  2018-08-28       Impact factor: 5.250

Review 4.  Orphan G protein-coupled receptors: The role in CNS disorders.

Authors:  Mohaddeseh Sadat Alavi; Ali Shamsizadeh; Hassan Azhdari-Zarmehri; Ali Roohbakhsh
Journal:  Biomed Pharmacother       Date:  2017-12-27       Impact factor: 6.529

5.  Antidepressant-like effect of low dose of scopolamine in the H/Rouen genetic mouse model of depression.

Authors:  Malika El Yacoubi; Jean-Marie Vaugeois; Stéphane Jamain
Journal:  Fundam Clin Pharmacol       Date:  2020-12-26       Impact factor: 2.748

6.  Cross-national epidemiology of DSM-IV major depressive episode.

Authors:  Evelyn Bromet; Laura Helena Andrade; Irving Hwang; Nancy A Sampson; Jordi Alonso; Giovanni de Girolamo; Ron de Graaf; Koen Demyttenaere; Chiyi Hu; Noboru Iwata; Aimee N Karam; Jagdish Kaur; Stanislav Kostyuchenko; Jean-Pierre Lépine; Daphna Levinson; Herbert Matschinger; Maria Elena Medina Mora; Mark Oakley Browne; Jose Posada-Villa; Maria Carmen Viana; David R Williams; Ronald C Kessler
Journal:  BMC Med       Date:  2011-07-26       Impact factor: 8.775

7.  OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders.

Authors:  Joanna S Amberger; Carol A Bocchini; François Schiettecatte; Alan F Scott; Ada Hamosh
Journal:  Nucleic Acids Res       Date:  2014-11-26       Impact factor: 19.160

Review 8.  RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education.

Authors:  Stephen K Burley; Helen M Berman; Cole Christie; Jose M Duarte; Zukang Feng; John Westbrook; Jasmine Young; Christine Zardecki
Journal:  Protein Sci       Date:  2017-11-11       Impact factor: 6.725

9.  Prediction and analysis of essential genes using the enrichments of gene ontology and KEGG pathways.

Authors:  Lei Chen; Yu-Hang Zhang; ShaoPeng Wang; YunHua Zhang; Tao Huang; Yu-Dong Cai
Journal:  PLoS One       Date:  2017-09-05       Impact factor: 3.240

10.  Effect of vortioxetine vs. escitalopram on plasma BDNF and platelet serotonin in depressed patients.

Authors:  Anja Dvojkovic; Matea Nikolac Perkovic; Marina Sagud; Gordana Nedic Erjavec; Alma Mihaljevic Peles; Dubravka Svob Strac; Bjanka Vuksan Cusa; Lucija Tudor; Zorana Kusevic; Marcela Konjevod; Maja Zivkovic; Sasa Jevtovic; Nela Pivac
Journal:  Prog Neuropsychopharmacol Biol Psychiatry       Date:  2020-06-11       Impact factor: 5.067

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  1 in total

1.  Honokiol improves depression-like behaviors in rats by HIF-1α- VEGF signaling pathway activation.

Authors:  Xiao-Xu Fan; Wen-Yan Sun; Yu Li; Qin Tang; Li-Na Li; Xue Yu; Shu-Yan Wang; Ang-Ran Fan; Xiang-Qing Xu; Hong-Sheng Chang
Journal:  Front Pharmacol       Date:  2022-08-25       Impact factor: 5.988

  1 in total

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