| Literature DB >> 35227274 |
Yu Gu1,2,3, Ming-Qiang Chu4, Zi-Jun Xu4,2,3, Qian Yuan1,4,2,3, Ting-Juan Zhang5,6,7, Jiang Lin8,9,10, Jing-Dong Zhou11,12,13.
Abstract
BACKGROUND: Recently, an increasing number of studies have reported that sperm-associated antigen (SPAG) proteins play crucial roles in solid tumorigenesis, and may serve as potentially helpful biomarkers for cancer diagnosis and prognosis. However, very few studies systematically investigated the expression of SPAG family members and their clinical significance in acute myeloid leukemia (AML).Entities:
Keywords: AML; Bioinformatics; Expression; Prognosis; SPAG1
Mesh:
Substances:
Year: 2022 PMID: 35227274 PMCID: PMC8886923 DOI: 10.1186/s12920-022-01193-0
Source DB: PubMed Journal: BMC Med Genomics ISSN: 1755-8794 Impact factor: 3.063
Cox regression univariate analysis of variables for overall survival in AML patients
| Variables | Whole-cohort AML | Non-M3 AML | CN-AML | |||
|---|---|---|---|---|---|---|
| HR (95% CI) | HR (95% CI) | HR (95% CI) | ||||
| 2.280 (1.562–3.327) | 0.000 | 2.011 (1.366–2.962) | 0.000 | 2.279 (1.283–4.047) | 0.005 | |
| 1.313 (0.908–1.897) | 0.148 | 1.536 (1.052–2.241) | 0.026 | 1.051 (0.614–1.798) | 0.857 | |
| 0.901 (0.624–1.302) | 0.578 | 1.021 (0.699–1.490) | 0.914 | 0.801 (0.469–1.367) | 0.416 | |
| 0.881 (0.610–1.273) | 0.501 | 1.047 (0.718–1.527) | 0.812 | 0.762 (0.442–1.315 | 0.329 | |
| 0.845 (0.584–1.223) | 0.373 | 0.747 (0.509–1.096) | 0.136 | 0.564 (0.319–0.998) | 0.049 | |
| 1.504 (1.039–2.178) | 0.031 | 1.359 (0.929–1.988) | 0.114 | 0.990 (0.575–1.705) | 0.971 | |
| 0.752 (0.519–1.089) | 0.131 | 0.820 (0.560–1.202) | 0.310 | 0.854 (0.498–1.467) | 0.568 | |
| 0.986 (0.683–1.423) | 0.939 | 0.906 (0.621–1.321) | 0.607 | 1.176 (0.686–2.014) | 0.556 | |
| 0.890 (0.616–1.287) | 0.537 | 1.026 (0.703–1.498) | 0.892 | 0.696 (0.406–1.193) | 0.187 | |
| 0.854 (0.591–1.234) | 0.401 | 0.777 (0.532–1.134) | 0.191 | 1.170 (0.683–2.004) | 0.567 | |
| 1.427 (0.985–2.069) | 0.060 | 1.257 (0.857–1.843) | 0.242 | 1.320 (0.769–2.266) | 0.314 | |
| 0.936 (0.648–1.351) | 0.722 | 0.913 (0.626–1.332) | 0.637 | 0.850 (0.498–1.453) | 0.553 | |
AML: acute myeloid leukemia; CN-AML: cytogenetically normal AML; HR: hazard ratio; CI: confidence interval. The prognostic value of SPAG11A, SPAG11B, and SPAG16/SPAM1 expression was not determined because the three members were hardly expressed in AML patients
Fig. 1The impact of expression on survival of AML patients. a The effect of SPAG1 expression on overall survival in whole-cohort AML, non-M3 AML, and CN-AML from TCGA dataset. b The effect of SPAG1 expression on disease/leukemia free survival in in whole-cohort AML, non-M3 AML, and CN-AML from TCGA dataset. c SPAG1 expression in AML from TCGA dataset. d The effect of SPAG1 expression on overall survival in 78 and 162 CN-AML from the GEO dataset (GSE12417) analyzed by the online web tool Genomicscape (http://genomicscape.com/microarray/survival.php). e The effect of SPAG1 expression on event-free survival and overall survival in AML from GEO datasets (GSE6891 and GSE37642)
Comparative analysis of SPAG1 expression with clinic-pathologic characteristics in AML
| Patient's parameters | |||
|---|---|---|---|
| Low (n = 87) | High (n = 86) | ||
| Sex, male/female | 46/41 | 46/40 | 1.000 |
| Median age, years (range) | 57 (18–88) | 61 (21–81) | 0.409 |
| Median WBC, × 109/L (range) | 11 (0.6–297.4) | 27.65 (0.4–223.8) | 0.014 |
| Median PB blasts, % (range) | 41 (0–98) | 36 (0–97) | 0.544 |
| Median BM blasts, % (range) | 70 (32–100) | 75 (30–98) | 0.377 |
| FAB classifications | 0.024 | ||
| M0 | 7 | 9 | NS |
| M1 | 27 | 17 | NS |
| M2 | 21 | 17 | NS |
| M3 | 11 | 5 | NS |
| M4 | 12 | 22 | 0.058 |
| M5 | 5 | 13 | 0.050 |
| M6 | 1 | 1 | NS |
| M7 | 3 | 0 | NS |
| No data | 0 | 2 | NS |
| Cytogenetics | 0.006 | ||
| Normal | 36 | 44 | NS |
| t(15;17) | 10 | 5 | NS |
| t(8;21) | 7 | 0 | 0.014 |
| inv(16) | 8 | 2 | NS |
| +8 | 1 | 7 | 0.034 |
| del(5) | 1 | 0 | NS |
| −7/del(7) | 4 | 3 | NS |
| 11q23 | 0 | 3 | NS |
| Others | 7 | 7 | NS |
| Complex | 11 | 14 | NS |
| No data | 2 | 1 | NS |
| Gene mutation | |||
| FLT3 (±) | 14/73 | 35/51 | 0.000 |
| NPM1 (±) | 20/67 | 28/58 | 0.177 |
| DNMT3A (±) | 12/75 | 30/56 | 0.001 |
| IDH2 (±) | 10/77 | 7/79 | 0.611 |
| IDH1 (±) | 9/78 | 7/79 | 0.794 |
| TET2 (±) | 9/78 | 6/80 | 0.590 |
| RUNX1 (±) | 8/79 | 7/79 | 1.000 |
| TP53 (±) | 6/81 | 8/78 | 0.590 |
| NRAS (±) | 6/81 | 6/80 | 1.000 |
| CEBPA (±) | 6/81 | 7/79 | 0.782 |
| WT1 (±) | 2/85 | 8/78 | 0.057 |
| PTPN11 (±) | 4/83 | 4/82 | 1.000 |
| KIT (±) | 6/81 | 1/85 | 0.117 |
| U2AF1 (±) | 4/83 | 3/83 | 1.000 |
| KRAS (±) | 2/85 | 5/81 | 0.278 |
AML: acute myeloid leukemia; WBC: white blood cell; PB: peripheral blood; BM: bone marrow; FAB: French-American-British; NS: no significance
Fig. 2The associations of SPAG1 expression with genetic abnormalities in AML. a SPAG1 expression in AML patients with and without chromosome 8 abnormalities from TCGA datasets. b SPAG1 expression in AML patients with and without FLT3 mutations from TCGA datasets. c SPAG1 expression in AML patients with and without DNMT3A mutations from TCGA datasets. d SPAG1 expression in AML patients with and without WT1 mutations from TCGA datasets
Cox regression multivariate analysis of variables for overall survival in AML patients
| Variables | Whole-cohort AML | Non-M3 AML | CN-AML | |||
|---|---|---|---|---|---|---|
| HR (95% CI) | HR (95% CI) | HR (95% CI) | ||||
| Age | 1.032 (1.016–1.047) | 0.000 | 1.024 (1.008–1.041) | 0.003 | 1.031 (1.012–1.051) | 0.001 |
| WBC | 1.006 (1.001–1.010) | 0.008 | 1.005 (1.000–1.009) | 0.041 | 1.006 (1.001–1.011) | 0.015 |
| Molecular risks | 2.112 (1.568–2.845) | 0.000 | 2.101 (1.526–2.892) | 0.000 | 1.769 (0.664–4.714) | 0.254 |
| Treatment regimen | 0.421 (0.273–0.650) | 0.000 | 0.389 (0.250–0.606) | 0.000 | 0.614 (0.326–1.155) | 0.131 |
| 2.162 (1.465–3.191) | 0.000 | 2.048 (1.377–3.047) | 0.000 | 2.419 (1.354–4.320) | 0.003 | |
AML: acute myeloid leukemia; CN-AML: cytogenetically normal AML; WBC: white blood cell. Variables including age (continuous variables), WBC (continuous variables), treatment regimen (with transplantation vs. without transplantation) and molecular risks (good, intermediate, poor, and unknown)
Fig. 3The impact of SPAG1 expression on survival of AML patients with specific subtypes. a Kaplan–Meier survival curves of overall survival and disease/leukemia free survival in whole-cohort AML and CN-AML without FLT3 mutation from TCGA datasets. b Kaplan–Meier survival curves of overall survival and disease/leukemia free survival in whole-cohort AML and CN-AML without DNMT3A mutation from TCGA datasets. c Kaplan–Meier survival curves of overall survival and disease/leukemia free survival in whole-cohort AML and CN-AML without WT1 mutation from TCGA datasets. d Kaplan–Meier survival curves of overall survival and disease/leukemia free survival in whole-cohort AML and CN-AML without FLT3/DNMT3A/WT1 mutation from TCGA datasets
Fig. 4The effect of HSCT on survival of AML patients among different SPAG1 expression groups. Kaplan–Meier survival curves of overall survival and disease/leukemia free survival among whole-cohort AML in both lower and higher SPAG1 expression group from TCGA datasets
Fig. 5Molecular signatures associated with SPAG1 in AML. a Expression heatmap of differentially expressed genes between AML patients with lower and higher SPAG1 expression groups among TCGA datasets (FDR < 0.05, P < 0.05 and |log2 FC|> 1.5). b Volcano plot of differentially expressed genes between AML patients with lower and higher SPAG1 expression (FDR < 0.05, P < 0.05, and |log2 FC|> 1.5). c Expression heatmap of differentially expressed microRNAs between AML patients with lower and higher SPAG1 expression (FDR < 0.05, P < 0.05, and |log2 FC|> 1.5). d GSEA analysis of SPAG1 expression associated with HOXA9 dysregulation oin AML (NOM P < 0.05 and FDR Q < 0.05)
Fig. 6Validation of SPAG1 expression and its clinical significance in AML. a SPAG1 expression in 15 controls, 86 AML patients at diagnosis time, and 45 AML patients who achieved complete remission. b ROC curve analysis of SPAG1 expression in distinguishing AML from controls. c SPAG1 expression at diagnosis time in AML patients who did and did not achieve CR after 1–2 course induction therapy. d Kaplan–Meier survival curves of overall survival regarding SPAG1 expression in whole-cohort AML from our hospital