Literature DB >> 35213015

Development and Use of Cellular Systems to Assess and Correct Splicing Defects.

Nuria Suárez-Herrera1, Tomasz Z Tomkiewicz1, Alejandro Garanto2,3, Rob W J Collin4.   

Abstract

A significant proportion of mutations underlying genetic disorders affect pre-mRNA splicing, generally causing partial or total skipping of exons, and/or inclusion of pseudoexons. These changes often lead to the formation of aberrant transcripts that can induce nonsense-mediated decay, and a subsequent lack of functional protein. For some genetic disorders, including inherited retinal diseases (IRDs), reproducing splicing dynamics in vitro is a challenge due to the specific environment provided by, e.g. the retinal tissue, cells of which cannot be easily obtained and/or cultured. Here, we describe how to engineer splicing vectors, validate the reliability and reproducibility of alternative cellular systems, assess pre-mRNA splicing defects involved in IRD, and finally correct those by using antisense oligonucleotide-based strategies.
© 2022. The Author(s).

Entities:  

Keywords:  ABCA4; Antisense oligonucleotide; Exon skipping; Genetic therapy; Inherited retinal diseases; Maxigene; Midigene; Pre-mRNA; Pseudoexon; Splicing modulation; Splicing vectors

Mesh:

Substances:

Year:  2022        PMID: 35213015     DOI: 10.1007/978-1-0716-2010-6_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  13 in total

Review 1.  Applications of antisense oligonucleotides for the treatment of inherited retinal diseases.

Authors:  Rob W J Collin; Alejandro Garanto
Journal:  Curr Opin Ophthalmol       Date:  2017-05       Impact factor: 3.761

Review 2.  Genetic therapies for RNA mis-splicing diseases.

Authors:  Suzan M Hammond; Matthew J A Wood
Journal:  Trends Genet       Date:  2011-04-15       Impact factor: 11.639

3.  In vitro and in vivo rescue of aberrant splicing in CEP290-associated LCA by antisense oligonucleotide delivery.

Authors:  Alejandro Garanto; Daniel C Chung; Lonneke Duijkers; Julio C Corral-Serrano; Muriël Messchaert; Ru Xiao; Jean Bennett; Luk H Vandenberghe; Rob W J Collin
Journal:  Hum Mol Genet       Date:  2016-04-22       Impact factor: 6.150

4.  Antisense Oligonucleotide-Based Rescue of Aberrant Splicing Defects Caused by 15 Pathogenic Variants in ABCA4.

Authors:  Tomasz Z Tomkiewicz; Nuria Suárez-Herrera; Frans P M Cremers; Rob W J Collin; Alejandro Garanto
Journal:  Int J Mol Sci       Date:  2021-04-28       Impact factor: 5.923

Review 5.  Stargardt disease: clinical features, molecular genetics, animal models and therapeutic options.

Authors:  Preena Tanna; Rupert W Strauss; Kaoru Fujinami; Michel Michaelides
Journal:  Br J Ophthalmol       Date:  2016-08-04       Impact factor: 4.638

Review 6.  The Human Gene Mutation Database: towards a comprehensive repository of inherited mutation data for medical research, genetic diagnosis and next-generation sequencing studies.

Authors:  Peter D Stenson; Matthew Mort; Edward V Ball; Katy Evans; Matthew Hayden; Sally Heywood; Michelle Hussain; Andrew D Phillips; David N Cooper
Journal:  Hum Genet       Date:  2017-03-27       Impact factor: 4.132

7.  Identification of splice defects due to noncanonical splice site or deep-intronic variants in ABCA4.

Authors:  Zeinab Fadaie; Mubeen Khan; Marta Del Pozo-Valero; Stéphanie S Cornelis; Carmen Ayuso; Frans P M Cremers; Susanne Roosing
Journal:  Hum Mutat       Date:  2019-09-03       Impact factor: 4.878

8.  ABCA4 midigenes reveal the full splice spectrum of all reported noncanonical splice site variants in Stargardt disease.

Authors:  Riccardo Sangermano; Mubeen Khan; Stéphanie S Cornelis; Valerie Richelle; Silvia Albert; Alejandro Garanto; Duaa Elmelik; Raheel Qamar; Dorien Lugtenberg; L Ingeborgh van den Born; Rob W J Collin; Frans P M Cremers
Journal:  Genome Res       Date:  2017-11-21       Impact factor: 9.043

9.  ABCA4-associated disease as a model for missing heritability in autosomal recessive disorders: novel noncoding splice, cis-regulatory, structural, and recurrent hypomorphic variants.

Authors:  Alejandro Garanto; Riccardo Sangermano; Miriam Bauwens; Sarah Naessens; Nicole Weisschuh; Julie De Zaeytijd; Mubeen Khan; Françoise Sadler; Irina Balikova; Caroline Van Cauwenbergh; Toon Rosseel; Jim Bauwens; Kim De Leeneer; Sarah De Jaegere; Thalia Van Laethem; Meindert De Vries; Keren Carss; Gavin Arno; Ana Fakin; Andrew R Webster; Thomy J L de Ravel de l'Argentière; Yves Sznajer; Marnik Vuylsteke; Susanne Kohl; Bernd Wissinger; Timothy Cherry; Rob W J Collin; Frans P M Cremers; Bart P Leroy; Elfride De Baere
Journal:  Genet Med       Date:  2019-01-23       Impact factor: 8.822

10.  Deep-intronic ABCA4 variants explain missing heritability in Stargardt disease and allow correction of splice defects by antisense oligonucleotides.

Authors:  Riccardo Sangermano; Alejandro Garanto; Mubeen Khan; Esmee H Runhart; Miriam Bauwens; Nathalie M Bax; L Ingeborgh van den Born; Muhammad Imran Khan; Stéphanie S Cornelis; Joke B G M Verheij; Jan-Willem R Pott; Alberta A H J Thiadens; Caroline C W Klaver; Bernard Puech; Isabelle Meunier; Sarah Naessens; Gavin Arno; Ana Fakin; Keren J Carss; F Lucy Raymond; Andrew R Webster; Claire-Marie Dhaenens; Heidi Stöhr; Felix Grassmann; Bernhard H F Weber; Carel B Hoyng; Elfride De Baere; Silvia Albert; Rob W J Collin; Frans P M Cremers
Journal:  Genet Med       Date:  2019-01-15       Impact factor: 8.822

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