Literature DB >> 35212872

An evaluation of errors in the mitochondrial COI sequences of Hydrachnidia (Acari, Parasitengona) in public databases.

María L Peláez1, José L Horreo2,3, Ricardo García-Jiménez4, Antonio G Valdecasas4.   

Abstract

Public molecular databases are fundamental tools for modern taxonomic studies whose usefulness rely on the soundness of the data within them. Here, we study potential errors that can arise along the data pipeline from sampling, specimen identification and molecular processing (digestion, amplification and sequencing) to the submission of sequences to these databases by using the DNA sequences of Hydrachnidia (Acari, Parasitengona) as a case study. Our results indicate that molecular information is available for only about 3% of the Hydrachnidia species known to date; yet, within this small percentage, errors are present in almost 5% of the species analyzed (0.5% of the sequences and almost 11% of the genera). This study underscores the scarcity of genetic data available for Hydrachnidia, but also that the proportion of errors in DNA sequences is relatively small. Even so, it highlights the danger associated with using DNA sequences from public databases, particularly for species identification, and reinforces the need for greater quality control measures and/or protocols to avoid an intensification of errors in the (post) genomics era. Finally, our study emphasizes that potential errors may also reveal cryptic diversity within a species.
© 2022. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  BOLD; Cryptic diversity; GenBank; Phylogeny; Species identification; Water mites

Mesh:

Year:  2022        PMID: 35212872     DOI: 10.1007/s10493-022-00703-0

Source DB:  PubMed          Journal:  Exp Appl Acarol        ISSN: 0168-8162            Impact factor:   2.132


  3 in total

1.  Minimal barcode distance between two water mite species from Madeira Island: a cautionary tale.

Authors:  Ricardo García-Jiménez; Jose Luis Horreo; Antonio G Valdecasas
Journal:  Exp Appl Acarol       Date:  2017-06-16       Impact factor: 2.132

2.  BOLD and GenBank revisited - Do identification errors arise in the lab or in the sequence libraries?

Authors:  Mikko Pentinsaari; Sujeevan Ratnasingham; Scott E Miller; Paul D N Hebert
Journal:  PLoS One       Date:  2020-04-16       Impact factor: 3.240

3.  "Forms" of water mites (Acari: Hydrachnidia): intraspecific variation or valid species?

Authors:  Jeanette Stålstedt; Johannes Bergsten; Fredrik Ronquist
Journal:  Ecol Evol       Date:  2013-08-28       Impact factor: 2.912

  3 in total

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