| Literature DB >> 35205402 |
Nobutaka Tachibana1, Katsuhiro Hosono1, Shuhei Nomura1, Shinji Arai1, Kaoruko Torii1, Kentaro Kurata1, Miho Sato1, Shuichi Shimakawa2, Noriyuki Azuma3, Tsutomu Ogata4,5, Yoshinao Wada6, Nobuhiko Okamoto6,7, Hirotomo Saitsu4, Sachiko Nishina3, Yoshihiro Hotta1.
Abstract
PURPOSE: Uniparental disomy (UPD) is a rare chromosomal abnormality. We performed whole-exosome sequencing (WES) in cases of early-onset retinal dystrophy and identified two cases likely caused by UPD. Herein, we report these two cases and attempt to clarify the clinical picture of retinal dystrophies caused by UPD.Entities:
Keywords: RP1-related retinitis pigmentosa; SRD5A3 gene; congenital disorders of glycosylation; retinal dystrophy; uniparental isodisomy
Mesh:
Substances:
Year: 2022 PMID: 35205402 PMCID: PMC8872353 DOI: 10.3390/genes13020359
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Figure 1Clinical features of case 1. The visual field examined at the age of 9 years: (A) left eye; (B) right eye. Visual field examined at the age of 14 years: (C) left eye; (D) right eye. The visual field was progressively constricted. Fundus photograph obtained at the age of 9 years: (E) right eye; (F) left eye. Fundus photography showed poor retinal color and narrowing of the retinal blood vessels. OCT images obtained at the age of 10 years: (G) right eye; (H) left eye. Although OCT images were poor due to nystagmus, retinal thinning and EZ line disappearance were observed.
Figure 2Findings of genetic and glycosylation analyses in patient 1. (A) (Left) H3M2 analysis using WES data showed LOH stretches on the whole of chromosome 4. (Right) Gene name, physical position, allele frequency in 8.3KJPN, and genotypes of the patient and her parents with 10 candidate variants are shown. Homozygous for reference allele, homozygous for alternate allele, and heterozygous genotypes are highlighted in yellow, green, and pink, respectively. Trio genotypes demonstrated maternal uniparental isodisomy. (B) Locations of reported SRD5A3 variants. Human SRD5A3 is 318 aa in length (NP_078868.1) and contains six putative transmembrane domains according to UniProt (Q9H8P0). Nonsense and frameshift variants are shown in the upper section, and missense variants are shown in the lower section. The p.Trp19Cys variant was in the transmembrane domain and substituted a conserved amino acid among vertebrates. (C) Deconvoluted spectra of transferrin from a patient (upper) and healthy individual (lower), analyzed by ESI-MS. The presence of the molecules lacking one or two N-glycans indicates deficient N-glycosylation.
Figure 3Clinical features of case 2. The visual field examined at the age of 26 years: (A) left eye; (B) right eye. The visual field was constricted. Fundus photograph obtained at the age of 26 years: (C) right eye; (D) left eye. Fundus photography showed poor retinal color and narrowing of the retinal blood vessels. FAF obtained at the age of 31 years: (E) right eye; (F) left eye. FAF showed low fluorescence, consistent with retinal degeneration. OCT images obtained at the age of 31 years: (G) right eye; (H) left eye. OCT images showed that the retina was highly thinning, and the EZ line could not be observed at all.
Figure 4Genetic findings in patient 2. (A) (Left) H3M2 analysis using WES data showed LOH stretches on the whole of chromosome 8. (Right) Gene name, physical position, allele frequency in 8.3KJPN, and genotypes of trio samples of eight candidate variants are shown. Homozygous for reference allele, homozygous for alternate allele, and heterozygous genotypes are highlighted in yellow, green, and pink, respectively. Trio genotypes indicated maternal uniparental isodisomy. (B) Integrative genomics viewer showed a sharp decline in sequencing depth at exon 4 of RP1 (red arrows), suggesting the Alu insertion. Discordant reads are highlighted in colors. (C) PCR analysis confirmed homozygous Alu insertion in the patient, and his mother was a carrier of the insertion.
Previous reports of uniparental disomy (UPD) in retinal dystrophy.
| CHR | Sex | Onset | Disomy | Gene | Origin | Ocular Diagnosis | Nystagmus | Ocular Findings | Intellectual Disability | Other Systemic Abnormalities | References |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | male | <5 years | Whole |
| paternal | LCA | + | VA: 20/200 in both eyes with a refraction of +4.00 (8 y) | - | hyperbetalipoproteinemiabenign hyperbilirubinemia | [ |
| 1 | female | - | Partial |
| paternal | RP | - | VA: 20/40 in both eyes with a mean refraction of +1.50 (49 y) | - | no hearing loss | [ |
| 1 | female | 15 years | Whole |
| paternal | Stargardt disease | - | VA: 20/200 OD and 20/150 OS | - | - | [ |
| 1 | female | 2–3 years | Partial |
| paternal | Stargardt disease | - | mild vision loss and strabismus (2–3 y), photophobia and dyschromatopsia | - | - | [ |
| 2 | female | 3–5 years | Whole |
| paternal | RP | - | night blindness, poor vision (preschool), peripheral vision reduction | - | - | [ |
| 2 | female | first week | Partial or Whole |
| paternal | ACHM | + | photophobia | - | multiple bilateral kidney cysts with a maximum diameter of 14 mm | [ |
| 4 | female | birth | Whole |
| maternal | RD | + | Fundus: poor retinal color and narrowing of the retinal blood vessels | + | epilepsy | this study |
| 6 | male | 43 years | Whole |
| maternal | RD with cone dysfunction | - | severe color vision defects | - | intrauterine growth retardation | [ |
| 6 | female | 3 months | Whole |
| maternal | RD with rod-cone dysfunction | + | poor pupillary constriction to strong light retinal pallor (3 months) | - | intrauterine growth retardation | [ |
| 8 | male | 7 years | Whole |
| maternal | RP | - | photophobia and night blindness (7 y) | - | - | this study |
| 14 | female | 5 days | Partial |
| maternal | ACHM | + | A-pattern exotropia, sluggish pupils without afferent defect | + | short stature, minimal dysmorphism | [ |
CHR: chromosome, LCA: Leber congenital amaurosis, VA: visual acuity, ERG: electroretinography, RP: retinitis pigmentosa, VF: visual field, ACHM: achromatopsia, RD: retinal dystrophy.