| Literature DB >> 35205271 |
Marco Guarneri1, Letizia Scola2, Rosa Maria Giarratana2, Manuela Bova2, Caterina Carollo1, Loredana Vaccarino2, Leonardo Calandra1, Domenico Lio2, Carmela Rita Balistreri2, Santina Cottone1.
Abstract
Chronic kidney disease (CKD) is characterized by an increased risk of kidney failure and end-stage renal disease (ESRD). Aging and comorbidities as cardiovascular diseases, metabolic disorders, infectious diseases, or tumors, might increase the risk of dialysis. In addition, genetic susceptibility factors might modulate kidney damage evolution. We have analyzed, in a group of ESRD patients and matched controls, a set of SNPs of genes (Klotho rs577912, rs564481, rs9536314; FGF23 rs7955866; IGF1 rs35767; TNFA rs1800629; IL6 rs1800795; MIF rs755622, rs1007888) chosen in relation to their possible involvement with renal disease and concomitant pathologies. Analysis of the raw data did indicate that IL6 rs180795 and MIF rs755622 SNPs might be markers of genetic susceptibility to ESRD. In particular, the C positive genotypes of MIF rs755622, (dominant model) seem to be an independent risk factor for ESDR patients (data adjusted for age, gender, and associated pathologies). Stratifying results according to age MIF rs755622 C positive genotype frequencies are increased in both the two age classes considered (<59 and ≥59-year-old subjects). Analyses of data according to gender allowed us to observe that ESRD women shoved a significantly reduced frequency of genotypes bearing IL6 rs180795 C allele. In addition, MIF rs755622 might interact with diabetes or hypercholesterolemia in increasing susceptibility to ESRD. In conclusion, our data indicate that some polymorphisms involved in the regulation of both renal function and inflammatory response can influence the evolution of chronic kidney disease and suggest that the modulation of the activities of these and other genes should also be considered as therapeutic targets on to intervene with innovative therapies.Entities:
Keywords: CKD; ESRD; IL6; MIF; SNP
Mesh:
Substances:
Year: 2022 PMID: 35205271 PMCID: PMC8872268 DOI: 10.3390/genes13020226
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Demographic and clinical characteristics of 93 patients with end-stage renal disease (ESRD) and 213 control subjects.
| Demographic | ESRD | Controls | <59-Year-Old Controls | ≥59-Year-Old Controls | |||||
|---|---|---|---|---|---|---|---|---|---|
| N. | % | N. | % | N. | % | N. | % | ||
| Age, mean ± SD | 69.01 ± 13.02 | 55.97 ± 10.99 | 43.75 ± 5.46 | 66.32 ± 5.24 | 0.1118 | ||||
| >59 years old | 71 | 76.3 | 67 | 31.45 | - | - | 67 | 31.45 | - |
| Women | 42 | 45.16 | 94 | 44.13 | 64 | 43.83 | 30 | 44.78 | 1.000 |
| Pathologies in ESRD and Controls | |||||||||
| Hypertension | 32 | 34.41 | 17 | 8.01 | - | - | 17 | 8.01 | <0.0001 |
| Type II Diabetes | 19 | 20.43 | 8 | 3.76 | - | - | 8 | 3.76 | <0.0001 |
| Hypercholesterolemia | 13 | 13.98 | 21 | 9.85 | - | - | 21 | 9.85 | 0.3242 |
* analyses of significant differences between ESRD patients and ≥59-year-old controls.
Typed SNPs.
| Gene | SNP | Major Allele | Minor Allele | Chr Location |
|---|---|---|---|---|
|
|
| C | A | 13:33036014 |
|
| C | T | 13: 33060846 | |
|
| T | G | 13:33054001 | |
|
|
| G | A | 12:4370383 |
|
|
| C | T | 12:102481791 |
|
|
| G | A | 6:31575254 |
|
|
| G | C | 7:22727026 |
|
|
| G | C | 22:23894205 |
|
| T | C | 22:23898914 |
SNP allelic and genotypic frequencies of 93 dialyzed patients (ESRD) and 213 control subjects.
| GENE | SNP | Alleles/ | Controls | ESRD | OR | 1 | ||
|---|---|---|---|---|---|---|---|---|
| Nr | Freq. | Nr | Freq. | |||||
|
|
| C | 360 | 0.85 | 162 | 0.87 | 1.24 | 0.458 |
| A | 66 | 0.15 | 24 | 0.13 | ||||
| CC | 150 | 0.7 | 71 | 0.76 | ||||
| CA | 60 | 0.28 | 20 | 0.22 | 0.442 | |||
| AA | 3 | 0.01 | 2 | 0.02 | ||||
|
| C | 262 | 0.62 | 113 | 0.61 | 0.97 | 0.857 | |
| T | 164 | 0.38 | 73 | 0.39 | ||||
| CC | 82 | 0.38 | 34 | 0.37 | ||||
| CT | 98 | 0.46 | 45 | 0.48 | 0.927 | |||
| TT | 33 | 0.15 | 14 | 0.15 | ||||
|
| T | 355 | 0.83 | 154 | 0.83 | 0.96 | 0.907 | |
| G | 71 | 0.17 | 32 | 0.17 | ||||
| TT | 153 | 0.72 | 63 | 0.68 | ||||
| TG | 49 | 0.23 | 28 | 0.3 | 0.242 | |||
| GG | 11 | 0.05 | 2 | 0.02 | ||||
|
|
| G | 380 | 0.89 | 168 | 0.9 | 1.13 | 0.774 |
| A | 46 | 0.11 | 18 | 0.1 | ||||
| GG | 175 | 0.82 | 77 | 0.83 | ||||
| GA | 30 | 0.14 | 14 | 0.15 | 0.757 | |||
| AA | 8 | 0.04 | 2 | 0.02 | ||||
|
|
| C | 348 | 0.82 | 150 | 0.81 | 0.93 | 0.822 |
| T | 78 | 0.18 | 36 | 0.19 | ||||
| CC | 146 | 0.69 | 64 | 0.69 | ||||
| CT | 56 | 0.26 | 22 | 0.24 | 0.673 | |||
| TT | 11 | 0.05 | 7 | 0.08 | ||||
|
|
| G | 388 | 0.91 | 176 | 0.95 | 1.72 | 0.145 |
| A | 38 | 0.09 | 10 | 0.05 | ||||
| GG | 178 | 0.84 | 85 | 0.91 | ||||
| GA | 32 | 0.15 | 6 | 0.06 | 0.105 | |||
| AA | 3 | 0.01 | 2 | 0.02 | ||||
|
|
| G | 311 | 0.73 | 152 | 0.82 | 0.61 | 0.024 |
| C | 115 | 0.27 | 34 | 0.18 | ||||
| GG | 118 | 0.55 | 65 | 0.70 | ||||
| GC | 75 | 0.35 | 22 | 0.24 | 0.059 | |||
| CC | 20 | 0.09 | 6 | 0.06 | ||||
|
|
| G | 301 | 0.71 | 108 | 0.58 | 1.83 | 0.0028 |
| C | 125 | 0.29 | 78 | 0.42 | ||||
| GG | 128 | 0.60 | 42 | 0.45 | ||||
| GC | 45 | 0.21 | 24 | 0.26 | 0.042 | |||
| CC | 40 | 0.19 | 27 | 0.29 | ||||
|
| T | 231 | 0.54 | 107 | 0.58 | 1.14 | 0.480 | |
| C | 195 | 0.46 | 79 | 0.42 | ||||
| TT | 70 | 0.33 | 34 | 0.37 | ||||
| TC | 91 | 0.43 | 39 | 0.42 | 0.778 | |||
| CC | 52 | 0.24 | 20 | 0.22 | ||||
1 Evaluation of SNP alleles and genotypes, significant differences between ESRD and controls (crude analyses) was performed using the chi-square test or Fisher’s exact test applied to 2 × 2 or 3 × 2 contingency tables.
Evaluation of SNP associations with ESRD (adjusted by age, gender, hypertension, diabetes, and hypercholesterolemia).
| Gene | SNP | Genetic Models | OR (95% CI) | |
|---|---|---|---|---|
|
| Dominant | 0.61 (0.32–1.20) | 0.15 | |
|
|
| Dominant | 1.09 (0.60–1.98) | 0.77 |
|
| Recessive | 0.25 (0.05–1.29) | 0.067 | |
|
|
| Recessive | 0.90 (0.16–4.98) | 0.9 |
|
|
| Recessive | 1.27 (0.39–4.12) | 0.69 |
|
|
| Overdominant |
|
|
|
|
| Dominant | 0.76 (0.42–1.39) | 0.37 |
|
|
| Dominant |
|
|
|
| Dominant | 0.87 (0.48–1.58) | 0.65 |
Evaluation of SNP associations with ESRD was performed using the best genetic transmission model of minor allele according to the lowest values of Bayesian and Akaike information criteria. Significant OR, and 95% CI are reported in bold.
Significant SNP genotype frequencies (gen. freq.) in end-stage renal disease patients (ESRD) and controls (CTRL) stratified according to 59 years age cut off (adjusted by gender, diabetes, hypertension, and hypercholesterolemia).
| Genes and SNP Alleles | Age < 59 | Age ≥ 59 | |||||||
|---|---|---|---|---|---|---|---|---|---|
| CTRL | ESRD | OR | CTRL | ESRD | OR | ||||
| N (Gen. Freq.) | N (Gen. Freq.) | ||||||||
|
| G/G | 82 (0.56) | 6 (0.28) | 0.29 (0.11–0.79) | 0.021 | 46 (0.69) | 36 (0.51) | 0.47 | 0.038 |
| C/G | 29 (0.20) | 8 (0.36) | 3.95 (1.19–13.17) | 0.013 | 16 (0.24) | 16 (0.22) | 0.93 | 1.00 | |
| C/C | 35 (0.24) | 8 (0.36) | 1.81 (0.70–4.68) | 0.292 | 5 (0.07) | 19 (0.27) | 4.56 | 0.003 | |
| C/* | 64 (0.44) | 16 (0.72) | 3.30 (1.40–10.89) | 0.021 | 21 (0.31) | 35 (0.49) | 2.13 | 0.038 | |
Significant SNP genotype frequencies (gen. freq.) in end-stage renal disease patients (ESRD) and controls (CTRL) stratified according to Gender (adjusted by 59 years of age cut-off, diabetes, hypertension, and hypercholesterolemia).
| Genes and SNP Alleles | FEMALE | MALE | |||||||
|---|---|---|---|---|---|---|---|---|---|
| CTRL | ESRD | OR | CTRL | ESRD | OR | ||||
| N (Gen. Freq.) | N (Gen. Freq.) | ||||||||
|
| G/G | 50 (0.53) | 31 (0.74) | 2.48 (1.12–5.51) | 0.036 | 68 (0.57) | 34 (0.67) | 1.50 (0.76–2.98) | 0.306 |
| C/G | 34 (0.36) | 9 (0.21) | 0.63 (0.23–1.69) | 0.111 | 41 (0.35) | 13 (0.25) | 0.65 (0.32–1.38) | 0.284 | |
| C/C | 10 (0.11) | 2 (0.05) | 0.49 (0.09–2.67) | 0.342 | 10 (0.08) | 4 (0.08) | 0.92 (0.27–3.13) | 1.00 | |
| C/* | 44 (0.47) | 11 (0.26) | 0.40 (0.18–0.89) | 0.036 | 51 (0.43) | 17 (0.33) | 0.67 (0.34–1.32) | 0.306 | |