Literature DB >> 35195040

The art of chromosome dynamics: an interview with Jane Skok.

Jane A Skok1.   

Abstract

In this interview, Professor Jane Skok speaks with Storm Johnson, commissioning editor for Epigenomics, on her work to date in the field of chromosome architecture and regulatory elements. Jane Skok's lab uses sophisticated microscopic techniques to visualize recombination in individual cells, tracing the dynamic changes in chromosome architecture and nuclear location at different stages of this complex process. This line of research unites two lifelong passions: science and art. After completing her PhD in immunology and genetics at the Imperial Cancer Research Fund in Lincoln's Inn Fields, Dr Skok took 12 years off and pursued training in art while caring for her young children. She then returned to science, joining David Gray's lab at Imperial College London as a postdoctoral fellow to study B cell biology and acquired expertise in Mandy Fisher's lab to understand how nuclear organization of the antigen receptor genes regulate V(D)J recombination and allelic exclusion. Dr Skok continued to pursue these questions in her own lab at University College London and elucidated the roles of Pax5, locus contraction and nuclear subcompartmentalization in maintaining allelic exclusion. In 2006, Dr Skok was recruited to New York University School of Medicine, where her lab has revealed the activities of several signaling factors in guiding B cell development and they made the surprising discovery that the RAG proteins and the DNA damage response factor ATM help ensure allelic exclusion at the immunoglobulin gene loci. More recently, those at the Skok lab have turned their attention to understanding how localized and long-range chromatin contacts impact gene regulation in health and disease settings.

Entities:  

Keywords:  CTCF; chromosome architecture; cohesin; nuclear organization; regulatory elements

Mesh:

Substances:

Year:  2022        PMID: 35195040      PMCID: PMC8977944          DOI: 10.2217/epi-2022-0042

Source DB:  PubMed          Journal:  Epigenomics        ISSN: 1750-192X            Impact factor:   4.778


  8 in total

1.  Higher-order looping and nuclear organization of Tcra facilitate targeted rag cleavage and regulated rearrangement in recombination centers.

Authors:  Julie Chaumeil; Mariann Micsinai; Panagiotis Ntziachristos; Ludovic Deriano; Joy M-H Wang; Yanhong Ji; Elphege P Nora; Matthew J Rodesch; Jeffrey A Jeddeloh; Iannis Aifantis; Yuval Kluger; David G Schatz; Jane A Skok
Journal:  Cell Rep       Date:  2013-02-14       Impact factor: 9.423

2.  The RAG2 C terminus suppresses genomic instability and lymphomagenesis.

Authors:  Ludovic Deriano; Julie Chaumeil; Marc Coussens; Asha Multani; YiFan Chou; Alexander V Alekseyenko; Sandy Chang; Jane A Skok; David B Roth
Journal:  Nature       Date:  2011-03-03       Impact factor: 49.962

3.  Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate.

Authors:  Ramya Raviram; Pedro P Rocha; Vincent M Luo; Emily Swanzey; Emily R Miraldi; Edward B Chuong; Cédric Feschotte; Richard Bonneau; Jane A Skok
Journal:  Genome Biol       Date:  2018-12-13       Impact factor: 13.583

Review 4.  Enhancer talk.

Authors:  Valentina Snetkova; Jane A Skok
Journal:  Epigenomics       Date:  2018-03-27       Impact factor: 4.778

Review 5.  A new take on v(d)j recombination: transcription driven nuclear and chromatin reorganization in rag-mediated cleavage.

Authors:  Julie Chaumeil; Jane A Skok
Journal:  Front Immunol       Date:  2013-12-06       Impact factor: 7.561

6.  CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci.

Authors:  Yi Fu; Pedro P Rocha; Vincent M Luo; Ramya Raviram; Yan Deng; Esteban O Mazzoni; Jane A Skok
Journal:  Nat Commun       Date:  2016-05-25       Impact factor: 14.919

7.  Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation.

Authors:  Mayilaadumveettil Nishana; Caryn Ha; Javier Rodriguez-Hernaez; Ali Ranjbaran; Erica Chio; Elphege P Nora; Sana B Badri; Andreas Kloetgen; Benoit G Bruneau; Aristotelis Tsirigos; Jane A Skok
Journal:  Genome Biol       Date:  2020-05-11       Impact factor: 13.583

8.  EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation.

Authors:  Priscillia Lhoumaud; Gunjan Sethia; Franco Izzo; Theodore Sakellaropoulos; Valentina Snetkova; Simon Vidal; Sana Badri; Macintosh Cornwell; Dafne Campigli Di Giammartino; Kyu-Tae Kim; Effie Apostolou; Matthias Stadtfeld; Dan Avi Landau; Jane Skok
Journal:  Genome Biol       Date:  2019-11-21       Impact factor: 13.583

  8 in total

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