| Literature DB >> 35194526 |
Fen Yang1, Ruiying Qiu1, Saimaitikari Abudoubari1, Ning Tao1,2, Hengqing An3,2.
Abstract
BACKGROUND: Gene-environment interaction is related to the prevalence of hypertension, but the impact of genetic polymorphisms on hypertension may vary due to different geography and population.Entities:
Keywords: Hypertension; Interaction; MTHFR gene; Occupational stress; SELE gene
Year: 2022 PMID: 35194526 PMCID: PMC8858580 DOI: 10.7717/peerj.12914
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
The primers and restriction endonuclease for amplifying the PCR of the target SNPs.
| SELE A 561C | SELE G98T | MTHFR C677T | MTHFR A1298C | |
|---|---|---|---|---|
| Primer sequences | F:ATTAGCATCAAGGTTTAGGATAGGT | F:TGCCCAAAATCTTAGGATGC | F:TGAAGGAGAGGTGTCTGCGGGA | F:CTTCTACCTGAAGAGCAAGTC |
| Length | 326 bp | 332 bp | 198 bp | 256 bp |
| REE (μl) | PstI(0.2) | HphI(1) | HinfI(1) | MboII(1) |
| 10x Buffer (μl) | 2 | 2 | 2 | 2 |
| ddH2O (μl) | 3 | 8.5 | 7 | 7 |
| PCR products | 17 | 8.5 | 10 | 10 |
| Temperature (°C) | 37 | 37 | 37 | 37 |
| Time (min) | 15 | 240 | 10 | 60 |
| Agarose gels | 2.5% | 2.5% | 3% | 3% |
| Voltage | 110 V | 100 V | 110 V | 100 V |
| Genotyping | CC:326 bp | TT:332 bp | CC:198 bp | CC256 bp |
| AA:222+104 bp | GG:194+138 bp | TT:175+23 bp | AA:17+22+30+27 bp | |
| AC:326+222+104 bp | GT:332+194+138 bp | CT:198+175+23 bp | AC:256+176+22+30+27 bp |
Distribution of basic demographic characteristics of case group and control group.
| Item |
| Case group | Control group |
|
| ||
|---|---|---|---|---|---|---|---|
|
| % |
| % | ||||
| Gender | 0.000 | 1.000 | |||||
| Male | 200 | 100 | 50.0 | 100 | 50.0 | ||
| Female | 110 | 55 | 50.0 | 55 | 50.0 | ||
| Age/years | 310 | 46.20 ± 5.458 | 46.21 ± 5.469 | 0.010 | 0.992 | ||
| Shift work | 0.000 | 1.000 | |||||
| Yes | 216 | 108 | 50.0 | 108 | 50.0 | ||
| No | 94 | 47 | 50.0 | 47 | 50.0 | ||
| Ethnic group | 1.741 | 0.187 | |||||
| Han | 253 | 122 | 48.2 | 131 | 51.8 | ||
| Others | 57 | 33 | 57.9 | 24 | 42.1 | ||
| Educational level | 3.780 | 0.052 | |||||
| High school or below | 173 | 95 | 549 | 78 | 45.1 | ||
| College or above | 137 | 60 | 43.8 | 77 | 56.2 | ||
| Professional title | 1.229 | 0.268 | |||||
| Junior or below | 95 | 43 | 45.3 | 52 | 54.7 | ||
| Intermediate or above | 215 | 112 | 52.1 | 103 | 47.9 | ||
| Marital status | 1.303 | 0.521 | |||||
| Single | 13 | 8 | 61.5 | 5 | 38.5 | ||
| Married | 259 | 126 | 48.6 | 133 | 51.4 | ||
| Divorced/others | 38 | 21 | 55.3 | 17 | 44.7 | ||
| Personal income per month/Yuan | 5.684 | 0.017 | |||||
| <5,000 | 202 | 111 | 55.0 | 91 | 945.0 | ||
| ≥5,000 | 108 | 44 | 40.7 | 64 | 59.3 | ||
| Smoking | 27.01 | <0.001 | |||||
| Yes | 183 | 114 | 62.3 | 69 | 37.7 | ||
| No | 127 | 41 | 32.3 | 86 | 67.7 | ||
| Drinking alcohol | 8.903 | 0.003 | |||||
| Yes | 218 | 121 | 55.5 | 97 | 44.5 | ||
| No | 92 | 34 | 37.0 | 58 | 63.0 | ||
| BMI (Body mass index/kg·m−2) | 5.845 | 0.016 | |||||
| 18.5~24 | 102 | 41 | 40.2 | 61 | 59.8 | ||
| >24 | 208 | 114 | 54.8 | 94 | 45.2 | ||
| Working age/years | 1.685 | 0.194 | |||||
| ≤15 | 113 | 51 | 45.1 | 62 | 54.9 | ||
| >15 | 197 | 104 | 52.8 | 93 | 47.2 | ||
| Total | 310 | 155 | 50.0 | 155 | 50.0 | ||
Distribution of gene and occupational stress between case group and control group.
| Item |
| Case group | Control group |
|
| ||
|---|---|---|---|---|---|---|---|
|
|
|
|
| ||||
| 1.025 | 0.599 | ||||||
| AA | 213 | 103 | 48.4 | 110 | 51.6 | ||
| CC | 15 | 9 | 60.0 | 6 | 40.0 | ||
| AC | 82 | 43 | 52.4 | 39 | 47.6 | ||
| 6.776 | 0.034 | ||||||
| GG | 196 | 87 | 44.4 | 109 | 55.6 | ||
| TT | 16 | 10 | 62.5 | 6 | 37.5 | ||
| GT | 98 | 58 | 59.2 | 40 | 40.8 | ||
| 12.036 | 0.002 | ||||||
| AA | 102 | 37 | 36.3 | 65 | 63.7 | ||
| CC | 66 | 40 | 60.6 | 26 | 39.4 | ||
| AC | 142 | 78 | 54.9 | 64 | 45.1 | ||
| 7.130 | 0.028 | ||||||
| CC | 116 | 50 | 43.1 | 66 | 56.9 | ||
| TT | 52 | 34 | 65.3 | 18 | 34.6 | ||
| CT | 142 | 71 | 50.0 | 71 | 50.0 | ||
| Occupational stress | 11.921 | 0.003 | |||||
| Low | 23 | 8 | 34.8 | 15 | 65.2 | ||
| Middle | 127 | 52 | 40.9 | 75 | 59.1 | ||
| High | 160 | 95 | 59.4 | 65 | 40.6 | ||
logistic regression analysis of the influence of genes and occupational stress on the prevalence of hypertension.
| Gene | Unadjusted | Adjusted | ||
|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| |
| SELE A561C | ||||
| AA | 1.00 | 1.00 | ||
| AC | 1.073 [0.624–1.844] | 0.800 | 1.161 [0.654–2.058] | 0.610 |
| CC | 1.519 [0.496–4.652] | 0.465 | 1.667 [0.495–5.617] | 0.409 |
| Additive | 1.751 [0.547–5.601] | 0.345 | 1.602 [0.551–4.658] | 0.387 |
| Dominant | 1.243 [0.763–1.997] | 0.392 | 1.337 [0.800–2.235] | 0.268 |
| Recessive | 0.653 [0.227–1.882] | 0.430 | 0.603 [0.192–1.896] | 0.387 |
| SELE G98T | ||||
| GG | 1.00 | 1.00 | ||
| GT | 2.039 [1.211–3.433] | 0.007 | 2.151 [1.227–3.375] | 0.008 |
| TT | 2.756 [0.924–8.216] | 0.069 | 2.724 [0.879–8.439] | 0.082 |
| Additive | 2.088 [0.730–5.971] | 0.170 | 2.086 [0.666–6.535] | 0.207 |
| Dominant | 1.852 [1.159–2.959] | 0.010 | 1.925 [1.163–3.186] | 0.011 |
| Recessive | 0.584 [0.207–1.648] | 0.309 | 0.602 [0.199–1.822] | 0.369 |
| MTHFR A1298C | ||||
| AA | 1.00 | 1.00 | ||
| AC | 2.223 [1.279–3.864] | 0.005 | 1.917 [1.064–3.453] | 0.030 |
| CC | 2.682 [1.351–5.327] | 0.005 | 2.233 [1.082–4.609] | 0.030 |
| Additive | 2.703 [1.428–5.114] | 0.002 | 2.497 [1.277–4.883] | 0.007 |
| Dominant | 2.303 [1.414–3.752] | 0.001 | 2.012 [1.200–3.373] | 0.008 |
| Recessive | 0.579 [0.333–1.008] | 0.054 | 0.610 [0.337–1.104] | 0.103 |
| MTHFR C677T | ||||
| CC | 1.00 | 1.00 | ||
| CT | 1.683 [0.990–2.860] | 0.054 | 1.913 [1.085–3.375] | 0.025 |
| TT | 2.511 [1.230–5.125] | 0.011 | 3.117 [1.430–6.795] | 0.004 |
| Additive | 2.493 [1.264–4.918] | 0.008 | 2.936 [1.398–6.166] | 0.004 |
| Dominant | 1.557 [0.980–2.575] | 0.061 | 1.802 [1.094–2.968] | 0.021 |
| Recessive | 0.468 [0.251–0.870] | 0.017 | 0.437 [0.225–0.849] | 0.015 |
| Occupational stress | ||||
| Low | 1.00 | 1.00 | ||
| Middle | 1.300 [0.514–3.289] | 0.580 | 0.753 [0.277–2.051] | 0.579 |
| High | 2.740 [1.098–6.837] | 0.031 | 1.629 [0.610–4.352] | 0.330 |
GMDR model of the influence of gene-gene, gene-occupational stress interaction on the prevalence of hypertension.
| Interaction model | Accuracy | Sign test ( | CV consistency | |
|---|---|---|---|---|
| Training set | Testing set | |||
| Gene-Gene | ||||
| A1298C | 0.5903 | 0.5851 | 9 (0.0107) | 10/10 |
| A1298C*C677T | 0.6677 | 0.6639 | 10 (0.0010) | 10/10 |
| A1298C*C677T*A561C | 0.6929 | 0.6542 | 10 (0.0010) | 7/10 |
| A1298C*C677T*A561C*G98T | 0.7310 | 0.6340 | 10 (0.0010) | 10/10 |
| Gene-Occupational stress | ||||
| Occupational stress | 0.5993 | 0.5503 | 8 (0.0547) | 7/10 |
| Occupational stress*C677T | 0.7010 | 0.6586 | 10 (0.0010) | 9/10 |
| Occupational stress*C677T*A1298C | 0.7662 | 0.7440 | 10 (0.0010) | 10/10 |
| Occupational stress*C677T*A1298C*G98T | 0.7958 | 0.7351 | 10 (0.0010) | 10/10 |
| Occupational stress*C677T*A1298C*G98T*A561C | 0.8235 | 0.6916 | 10 (0.0010) | 10/10 |
Figure 1Forest plot of logistic regression analysis of the influence of genes and occupational stress.
Figure 2Gene-gene interaction model of MTHFR gene A1298C and C677T sites.
Figure 3Gene-gene interaction dendrogram of MTHFR gene A1298C and C677T sites.
Figure 4Gene-environment interaction model of MTHFR gene A1298C and C677T sites and occupational stress.