Literature DB >> 35193317

Characterizing stochastic cell-cycle dynamics in exponential growth.

Dean Huang1, Teresa Lo1, Houra Merrikh2,3, Paul A Wiggins1,4,5.   

Abstract

Two powerful and complementary experimental approaches are commonly used to study the cell cycle and cell biology: One class of experiments characterizes the statistics (or demographics) of an unsynchronized exponentially growing population, while the other captures cell-cycle dynamics, either by time-lapse imaging of full cell cycles or in bulk experiments on synchronized populations. In this paper, we study the subtle relationship between observations in these two distinct experimental approaches. We begin with an existing model: A single-cell deterministic description of cell-cycle dynamics where cell states (i.e., periods or phases) have precise lifetimes. We then generalize this description to a stochastic model in which the states have stochastic lifetimes, as described by arbitrary probability distribution functions. Our analyses of the demographics of an exponential culture reveal a simple and exact correspondence between the deterministic and stochastic models: The corresponding state ages in the deterministic model are equal to the exponential mean of the age in the stochastic model. An important implication is therefore that the demographics of an exponential culture will be well fit by a deterministic model even if the state timing is stochastic. Although we explore the implications of the models in the context of the Escherichia coli cell cycle, we expect both the models as well as the significance of the exponential-mean lifetimes to find many applications in the quantitative analysis of cell-cycle dynamics in other biological systems.

Entities:  

Year:  2022        PMID: 35193317      PMCID: PMC9506121          DOI: 10.1103/PhysRevE.105.014420

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.707


  24 in total

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Journal:  Mol Gen Genet       Date:  1975

Review 2.  Replication-transcription conflicts in bacteria.

Authors:  Houra Merrikh; Yan Zhang; Alan D Grossman; Jue D Wang
Journal:  Nat Rev Microbiol       Date:  2012-06-06       Impact factor: 60.633

3.  Robust growth of Escherichia coli.

Authors:  Ping Wang; Lydia Robert; James Pelletier; Wei Lien Dang; Francois Taddei; Andrew Wright; Suckjoon Jun
Journal:  Curr Biol       Date:  2010-05-27       Impact factor: 10.834

4.  Dancing around the divisome: asymmetric chromosome segregation in Escherichia coli.

Authors:  Xindan Wang; Christophe Possoz; David J Sherratt
Journal:  Genes Dev       Date:  2005-10-01       Impact factor: 11.361

Review 5.  Bacterial cell division: assembly, maintenance and disassembly of the Z ring.

Authors:  David W Adams; Jeff Errington
Journal:  Nat Rev Microbiol       Date:  2009-09       Impact factor: 60.633

6.  Characterization of dnaC2 and dnaC28 mutants by flow cytometry.

Authors:  H L Withers; R Bernander
Journal:  J Bacteriol       Date:  1998-04       Impact factor: 3.490

Review 7.  At the Heart of Bacterial Cytokinesis: The Z Ring.

Authors:  Shishen Du; Joe Lutkenhaus
Journal:  Trends Microbiol       Date:  2019-06-03       Impact factor: 17.079

8.  The Synchronization of Replication and Division Cycles in Individual E. coli Cells.

Authors:  Mats Wallden; David Fange; Ebba Gregorsson Lundius; Özden Baltekin; Johan Elf
Journal:  Cell       Date:  2016-07-28       Impact factor: 41.582

9.  Spatial and temporal organization of replicating Escherichia coli chromosomes.

Authors:  Ivy F Lau; Sergio R Filipe; Britta Søballe; Ole-Andreas Økstad; Francois-Xavier Barre; David J Sherratt
Journal:  Mol Microbiol       Date:  2003-08       Impact factor: 3.501

10.  Genome-scale quantitative characterization of bacterial protein localization dynamics throughout the cell cycle.

Authors:  Nathan J Kuwada; Beth Traxler; Paul A Wiggins
Journal:  Mol Microbiol       Date:  2014-11-24       Impact factor: 3.501

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