Literature DB >> 3519213

Refined 1.2 A crystal structure of the complex formed between subtilisin Carlsberg and the inhibitor eglin c. Molecular structure of eglin and its detailed interaction with subtilisin.

W Bode, E Papamokos, D Musil, U Seemueller, H Fritz.   

Abstract

The crystal structure of the complex formed between eglin c, an elastase inhibitor from the medical leech, and subtilisin Carlsberg has been determined at 1.2 A resolution by a combination of Patterson search methods and isomorphous replacement techniques. The structure has been refined to a crystallographic R-value of 0.18 (8-1.2 A). Eglin consists of a four-stranded beta-sheet with an alpha-helical segment and the protease-binding loop fixed on opposite sides. This loop, which contains the reactive site Leu45I--Asp46I, is mainly held in its conformation by unique electrostatic/hydrogen bond interactions of Thr44I and Asp46I with the side chains of Arg53I and Arg51I which protrude from the hydrophobic core of the molecule. The conformation around the reactive site is similar to that found in other proteinase inhibitors. The nine residues of the binding loop Gly40I--Arg48I are involved in direct contacts with subtilisin. In this interaction, eglin segment Pro42I--Thr44I forms a three-stranded anti-parallel beta-sheet with subtilisin segments Gly100--Gly102 and Ser125--Gly127. The reactive site peptide bond of eglin is intact, and Ser221 OG of the enzyme is 2.81 A apart from the carbonyl carbon.

Entities:  

Mesh:

Substances:

Year:  1986        PMID: 3519213      PMCID: PMC1166863          DOI: 10.1002/j.1460-2075.1986.tb04286.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  22 in total

1.  Isolation and characterisation of a low molecular weight inhibitor (of chymotrypsin and human granulocytic elastase and cathepsin G) from leeches.

Authors:  U Seemüller; M Meier; K Ohlsson; H P Müller; H Fritz
Journal:  Hoppe Seylers Z Physiol Chem       Date:  1977-09

2.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

3.  A large fragment approach to DNA synthesis: total synthesis of a gene for the protease inhibitor eglin c from the leech Hirudo medicinalis and its expression in E. coli.

Authors:  H Rink; M Liersch; P Sieber; F Meyer
Journal:  Nucleic Acids Res       Date:  1984-08-24       Impact factor: 16.971

4.  Crystal structure at 2.6 A resolution of the complex of subtilisin BPN' with streptomyces subtilisin inhibitor.

Authors:  S Hirono; H Akagawa; Y Mitsui; Y Iitaka
Journal:  J Mol Biol       Date:  1984-09-15       Impact factor: 5.469

5.  Structure of the complex of Streptomyces griseus protease B and the third domain of the turkey ovomucoid inhibitor at 1.8-A resolution.

Authors:  R J Read; M Fujinaga; A R Sielecki; M N James
Journal:  Biochemistry       Date:  1983-09-13       Impact factor: 3.162

6.  Crystallographic refinement of Japanese quail ovomucoid, a Kazal-type inhibitor, and model building studies of complexes with serine proteases.

Authors:  E Papamokos; E Weber; W Bode; R Huber; M W Empie; I Kato; M Laskowski
Journal:  J Mol Biol       Date:  1982-07-05       Impact factor: 5.469

7.  Computer-generated schematic diagrams of protein structures.

Authors:  A M Lesk; K D Hardman
Journal:  Science       Date:  1982-04-30       Impact factor: 47.728

Review 8.  The anatomy and taxonomy of protein structure.

Authors:  J S Richardson
Journal:  Adv Protein Chem       Date:  1981

9.  Structure of the elastase-cathepsin G inhibitor of the leech Hirudo medicinalis.

Authors:  U Seemüller; M Eulitz; H Fritz; A Strobl
Journal:  Hoppe Seylers Z Physiol Chem       Date:  1980-12

10.  Human alpha 1-proteinase inhibitor. Crystal structure analysis of two crystal modifications, molecular model and preliminary analysis of the implications for function.

Authors:  H Loebermann; R Tokuoka; J Deisenhofer; R Huber
Journal:  J Mol Biol       Date:  1984-08-15       Impact factor: 5.469

View more
  19 in total

Review 1.  Evolutionary families of peptidase inhibitors.

Authors:  Neil D Rawlings; Dominic P Tolle; Alan J Barrett
Journal:  Biochem J       Date:  2004-03-15       Impact factor: 3.857

2.  Molecular basis for the resistance of an insect chymotrypsin to a potato type II proteinase inhibitor.

Authors:  K M Dunse; Q Kaas; R F Guarino; P A Barton; D J Craik; M A Anderson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-09       Impact factor: 11.205

3.  Prediction of location of active sites in biologically active peptides.

Authors:  T Kikuchi
Journal:  J Protein Chem       Date:  1996-08

4.  Long-range electrostatic complementarity governs substrate recognition by human chymotrypsin C, a key regulator of digestive enzyme activation.

Authors:  Jyotica Batra; András Szabó; Thomas R Caulfield; Alexei S Soares; Miklós Sahin-Tóth; Evette S Radisky
Journal:  J Biol Chem       Date:  2013-02-19       Impact factor: 5.157

5.  Crystal structures of bovine chymotrypsin and trypsin complexed to the inhibitor domain of Alzheimer's amyloid beta-protein precursor (APPI) and basic pancreatic trypsin inhibitor (BPTI): engineering of inhibitors with altered specificities.

Authors:  A J Scheidig; T R Hynes; L A Pelletier; J A Wells; A A Kossiakoff
Journal:  Protein Sci       Date:  1997-09       Impact factor: 6.725

6.  S-ovalbumin, an ovalbumin conformer with properties analogous to those of loop-inserted serpins.

Authors:  J A Huntington; P A Patston; P G Gettins
Journal:  Protein Sci       Date:  1995-04       Impact factor: 6.725

7.  Hybrid molecular structure of the giant protease tripeptidyl peptidase II.

Authors:  Crystal K Chuang; Beate Rockel; Gönül Seyit; Peter J Walian; Anne-Marie Schönegge; Jürgen Peters; Petrus H Zwart; Wolfgang Baumeister; Bing K Jap
Journal:  Nat Struct Mol Biol       Date:  2010-08-01       Impact factor: 15.369

8.  On the role of protein structural dynamics in the catalytic activity and thermostability of serine protease subtilisin Carlsberg.

Authors:  Miraida Pagán; Ricardo J Solá; Kai Griebenow
Journal:  Biotechnol Bioeng       Date:  2009-05-01       Impact factor: 4.530

9.  Recruitment of substrate-specificity properties from one enzyme into a related one by protein engineering.

Authors:  J A Wells; B C Cunningham; T P Graycar; D A Estell
Journal:  Proc Natl Acad Sci U S A       Date:  1987-08       Impact factor: 11.205

10.  Structure of a switchable subtilisin complexed with a substrate and with the activator azide.

Authors:  Travis Gallagher; Biao Ruan; Mariya London; Molly A Bryan; Philip N Bryan
Journal:  Biochemistry       Date:  2009-11-03       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.