| Literature DB >> 35191167 |
Nicole C Vissichelli1, Megan K Morales1, Alexandra Bryson2, David Bruno3.
Abstract
Entities:
Mesh:
Year: 2022 PMID: 35191167 PMCID: PMC9115332 DOI: 10.1111/tid.13816
Source DB: PubMed Journal: Transpl Infect Dis ISSN: 1398-2273
SARS‐CoV‐2 test results and cycle threshold
| (A) Patient 1 | |||||
|---|---|---|---|---|---|
| Hospital day | Test platform | Result | ORF1ab | N gene | S gene |
| 0 | Infinity | Positive | NA | 20.6 | NA |
| 9 | Roche 6800 | Positive | Unavailable | NA | NA |
| 14 | ABI 7500 | Presumptive positive | ND | ND | 34.7 |
| 23 | ABI 7500 | Positive | 31.5 | 31.7 | ND |
| 29 | ABI 7500 | Positive | 23.5 | 24.5 | 24.0 |
| 34 | ABI 7500 | Negative | ND | ND | ND |
| 42 | Roche 6800 | Presumptive detection | Unavailable | NA | NA |
| 49 | ABI 7500 | Negative | ND | ND | ND |
| 51 | Roche 6800 | Negative | ND | NA | NA |
SARS‐CoV‐2 tests performed on Patients 1 and 2 during hospital stay. For each test, the platform, result and cycle threshold (Ct) for each gene detected is shown. Gene targets that were not detected are listed as “ND,” and gene targets that are not applicable to a given PCR test are listed as “NA.” SARS‐CoV‐2 tests were performed using four different platforms: (1) ABI 7500 platform (ThermoFisher TaqPath COVID‐19 Combo Kit, which detects ORF1ab, S, and N with Cts ≤37 defined as positive), (2) Cephied Infinity platform (Xpert Xpress SARS‐CoV‐2, which detects E and N2 and does not list specific Cts in their package insert to define a positive result), (3) Roche 6800 platform (cobas SARS‐CoV‐2 Test, which detects ORF1ab and E; the Ct values were not available to us for this study), and (4) BioFire Film Array which does not provide Ct values.
For Infinity test performed at day 9, E gene was also detected at at Ct of 22.9.