Qilong Fang1, Yan Zhang1, Jingxian Xia1, Yuyang Li1. 1. Key Laboratory for Power Machinery and Engineering of MOE, School of Mechanical Engineering, Shanghai Jiao Tong University, Shanghai 200240, P. R. China.
Abstract
Silicon-based organic precursors are widely applied in the vapor-fed flame synthesis of monocrystalline silicon, silicon dioxide, and silicon nitride. Due to the lack of kinetic investigations on reactions of silicon-based organic precursors, rate constants were usually analogized to those of their hydrocarbon counterparts. Investigations on the similarities and differences between the two types of compounds become necessary. This work reports a comparative theoretical investigation on H-abstraction reactions with H and CH3 attacking for silanes and their alkane counterparts, including silane and methane, disilane, methylsilane and ethane, dimethylsilane and propane, trimethylsilane and iso-butane, and tetramethylsilane and neo-pentane at the domain-based local pair natural orbital coupled cluster with perturbative triple excitations (DLPNO-CCSD(T))/cc-pVTZ//M06-2X/cc-pVTZ level. The rate constants were calculated using the conventional transition-state theory coupled with the asymmetric Eckart tunneling corrections over 600-2000 K. The calculated results show that dramatic discrepancies exist between H-abstraction from silicon sites in silanes and equivalent carbon sites in their alkane counterparts with H and CH3 attacking. The H-abstraction reactions from the primary carbon sites in silanes have generally lower barrier energies than the similar reactions in their alkane counterparts, while those in methylsilane and dimethylsilane with H attacking are the only two with higher barrier energies. Electrostatic potential mapped molecular van der Waals surfaces were adopted to provide insight into the calculated trends in barrier energies. The H-abstraction reactions from silicon sites in silanes have much higher rate constants than those from equivalent carbon sites in their alkane counterparts, especially under low-temperature conditions, while the rate constants of H-abstraction reactions from primary carbon sites in silanes and their alkane counterparts show relatively strong analogy.
Silicon-based organic precursors are widely applied in the vapor-fed flame synthesis of monocrystalline silicon, silicon dioxide, and silicon nitride. Due to the lack of kinetic investigations on reactions of silicon-based organic precursors, rate constants were usually analogized to those of their hydrocarbon counterparts. Investigations on the similarities and differences between the two types of compounds become necessary. This work reports a comparative theoretical investigation on H-abstraction reactions with H and CH3 attacking for silanes and their alkane counterparts, including silane and methane, disilane, methylsilane and ethane, dimethylsilane and propane, trimethylsilane and iso-butane, and tetramethylsilane and neo-pentane at the domain-based local pair natural orbital coupled cluster with perturbative triple excitations (DLPNO-CCSD(T))/cc-pVTZ//M06-2X/cc-pVTZ level. The rate constants were calculated using the conventional transition-state theory coupled with the asymmetric Eckart tunneling corrections over 600-2000 K. The calculated results show that dramatic discrepancies exist between H-abstraction from silicon sites in silanes and equivalent carbon sites in their alkane counterparts with H and CH3 attacking. The H-abstraction reactions from the primary carbon sites in silanes have generally lower barrier energies than the similar reactions in their alkane counterparts, while those in methylsilane and dimethylsilane with H attacking are the only two with higher barrier energies. Electrostatic potential mapped molecular van der Waals surfaces were adopted to provide insight into the calculated trends in barrier energies. The H-abstraction reactions from silicon sites in silanes have much higher rate constants than those from equivalent carbon sites in their alkane counterparts, especially under low-temperature conditions, while the rate constants of H-abstraction reactions from primary carbon sites in silanes and their alkane counterparts show relatively strong analogy.
In the field of nanomaterial synthesis, great attention is paid
to the applications of flame synthesis methods.[1−5] Among flame synthesis methods, vapor-fed aerosol
flame synthesis (VAFS) can facilitate direct growth of nanomaterials
and has a simple preparation process compared with wet chemical methods
such as coprecipitation and a sol–gel method,[6] making it a promising nanomaterial synthesis method. As
a result, VAFS technology has been widely applied in industrial production
of nanoparticles, such as gaseous silica, titanium dioxide pigment,
and carbon black.[7] In particular, many
studies have been carried out on the VAFS of silicon-containing nanoparticles,
such as silicon carbide, silicon nitride, and silicon dioxide, which
are widely used in semiconductor, electronic industry, biomedical
and other fields,[8−10] where silanes are important VAFS precursors.For better control of the particle sizes, chemical activities,
and other properties of silicon-containing nanoparticles, understanding
the reaction mechanisms and developing kinetic models of silanes under
combustion circumstances are essential.[11,12] Britten et
al.[13] developed a kinetic model of silane
(SiH4) to describe the combustion characteristics under
a wide range of conditions, while Miller et al.[14] updated the Britten model using their calculated rate constants
of SiH3 + O2 reactions. Parandaman et al.[15] studied the kinetics of the thermal decomposition
of tetramethylsilane (TeMS, Si(CH3)4) behind
the reflected shock waves and developed a pyrolysis model of TeMS.
Sela et al.[16] investigated the TeMS decomposition
in a shock tube using gas chromatography/mass spectrometry (GC/MS)
and high-repetition-rate time-of-flight mass spectrometry (HRR-TOF-MS).
They also developed a new TeMS submechanism and incorporated it into
the USC Mech II model to predict their measurements. Janbazi et al.[17] developed an oxidation model of TeMS to simulate
their measured results in a low-pressure lean H2/TeMS/O2/Ar flame.The most important parameters in kinetic
models are rate constants
of elementary reactions, especially for the H-abstraction reactions,
which play an important role in combustion of VAFS precursors.[17,18] However, the rate constants of silicon-containing reactions are
far from sufficiently understood, especially compared with those of
their hydrocarbon counterparts. Mick et al.[19] obtained the rate constant of Si2H6 = SiH4 + SiH2 by the SiH2 absorption measurements
in a shock tube over 0.35–1.3 bar and 1070–1381 K. Hershberger
and co-workers[20,21] measured the rate constants of
silyl radical (SiH3) with NO2, O2, and H2O2 by time-resolved infrared diode
laser absorption spectroscopy over 235–573 K at low pressure.
Ding and Marshall[22] measured the rate constants
of the reactions of Cl and Br with trimethylsilane (TrMS, (CH3)3SiH) using a flash-photolysis resonance fluorescence
(FPRF) method over 300–460 K at low pressure. For theoretical
calculations, Espinosa-García et al.[23] calculated the rate constants of the SiH4 + H = SiH3 + H2 reaction and investigated the kinetic isotope
effect. Wu et al.[24] calculated the rate
constants for the reactions of SiH4 + H and Si2H6 + H2. Qi and Sun[25] also studied the reaction paths and rate constants of SiH4 + H using the ab initio method. Oueslati et al.[26] conducted ab initio calculations
on the H-abstraction reactions of TeMS with H and D attacking.To incorporate silicon-containing reactions without available rate
constants in kinetic models, analogy with their hydrocarbon counterparts
or model hydrocarbon compounds becomes a practical approach and has
been widely adopted in the development of kinetic models for silicon-based
precursors.[17,27−29] Here comes
an important question: is it reasonable and always reliable to refer
the rate constants of silicon-containing reactions to those of their
hydrocarbon counterparts or model hydrocarbon compounds, even if silicon
and carbon belong to the same element family? Several pioneering studies
have been performed in this field. Peukert et al.[30] measured the rate constant for H-abstraction from TeMS
and neo-pentane (NPT, C(CH3)4) with H attacking in a shock tube combined with time-resolved H-atom
resonance absorption spectrometry (H-ARAS) and found that their rate
constants are similar. They also compared the H-abstraction reaction
between tetramethoxysilane (TMOS, Si(OCH3)4)
and dimethyl ether (DME, CH3OCH3) and also found
that TMOS has similar rate constants to DME over 1111–1238
K at 1.3–1.4 bar.[31] Nurkowski et
al.[32] calculated the rate constants for
pressure-dependent reactions (OH)3SiOC2H5 = (OH)3SiOCH2 + CH3 and
C2H5OH = CH2OH + CH3 using
variable reaction coordinate variational transition-state theory (VRC-TST),
which showed comparable rate constants between the two reactions.
They also calculated the ethylene elimination reaction of TEOS and
found that the rate constant is similar to that of the H2O elimination reaction of ethanol.[21] However,
these studies are only focused on limited systems and the comparison
is usually insufficient, especially for the silane systems. No specific
investigation has been performed on the influence of different molecular
structures and attacking radicals, as well as the behaviors between
silicon and carbon sites.In this work, the H-abstraction reactions
from six cases of silanes
and their alkane counterparts, including silane and methane (CH4), disilane (Si2H6) and ethane (C2H6), methylsilane (CH3SiH3) and ethane, dimethylsilane (DMS, (CH3)2SiH2) and propane (C3H8), TrMS and iso-butane (IBT, (CH3)3CH), and TeMS
and NPT, were theoretically investigated. Among them, the H-abstraction
reactions of DMS and TrMS systems were studied for the first time. Table lists the abbreviations
and corresponding species and their chemical formulas. The first five
cases can help explore the behaviors between silicon and carbon sites,
while the comparison between methylsilanes and their alkane counterparts
can help investigate the influence of different molecular structures
on the primary carbon site. On the other hand, most of the VAFS systems
adopt H2 and methane flames as the base flames, which will
lead to a combustion circumstance with abundant H and CH3 radicals. Thus, H and CH3 were selected as the two attacking
radicals in this work to reveal the influence of different attacking
radicals. Potential energy surfaces (PESs) and electrostatic potential
(ESP) mapped molecular van der Waals (vdW) surfaces were explored
and rate constants were calculated, which provide insight into differences
and similarities between H-abstraction reactions from silanes and
their alkane counterparts.
Table 1
List of Abbreviations,
and Corresponding
Species and Their Chemical Formulas
species
chemical formula
abbreviation
dimethylsilane
(CH3)2SiH2
DMS
trimethylsilane
(CH3)3SiH
TrMS
tetramethylsilane
Si(OCH3)4
TeMS
iso-butane
(CH3)3CH
IBT
neo-pentane
C(CH3)4
NPT
Results
and Discussions
Barrier Energies of H-Abstraction
from Silanes
and Alkanes
The calculated barrier energies with zero-point
energy (ZPE) correction for H-abstraction from silanes and their alkane
counterparts are shown in Figure with H and CH3 as the attacking radicals,
respectively. The PESs, relative enthalpies (ΔH), free energies (ΔG), and entropies (ΔS) of the H-abstraction transition states at different temperatures,
and geometries and frequencies of species are listed in the Supporting Information. The configurations and
ESP-mapped vdW surfaces along with surface extrema of silanes and
alkanes are shown in Figure .
Figure 1
Calculated barrier energies with ZPE corrected for H-abstraction
from silanes and alkanes with (a) H attacking and (b) CH3 attacking at the domain-based local pair natural orbital coupled
cluster with perturbative triple excitations (DLPNO-CCSD(T))/cc-pVTZ//M06–2X/cc-pVTZ
level.
Figure 2
Configurations and ESP-mapped molecular vdW
surfaces of silanes
and their alkane counterparts with the unit in kcal/mol. Red and blue
colors denote positive and negative ESP values, respectively, with
the transition regions shown in white. Surface local minima and maxima
of ESP are represented as small cyan and orange spheres, respectively.
The color scale bar is different for each molecule.
Calculated barrier energies with ZPE corrected for H-abstraction
from silanes and alkanes with (a) H attacking and (b) CH3 attacking at the domain-based local pair natural orbital coupled
cluster with perturbative triple excitations (DLPNO-CCSD(T))/cc-pVTZ//M06–2X/cc-pVTZ
level.Configurations and ESP-mapped molecular vdW
surfaces of silanes
and their alkane counterparts with the unit in kcal/mol. Red and blue
colors denote positive and negative ESP values, respectively, with
the transition regions shown in white. Surface local minima and maxima
of ESP are represented as small cyan and orange spheres, respectively.
The color scale bar is different for each molecule.For silane and methane, the barrier energies of H-abstraction
from
silane and methane are 4.9 and 13.4 kcal/mol with H attacking, while
the values become 9.3 and 17.5 kcal/mol with CH3 attacking,
respectively, as shown in Figure . The barrier energies for H-abstraction from silane
with H and CH3 attacking are lower than those of H-abstraction
from methane, which is in accordance with the order of Si–H
and C–H bond dissociation energies (BDEs) in silane (91.7 kcal/mol)
and methane (105.0 kcal/mol).[33] From the
ESP-mapped molecular vdW surface of silane shown in Figure a, the global maximum on the
SiH4 surface is found to be +17.86 kcal/mol, and
the positive region is mainly localized on the silicon atom. The global
minima on the surface are found to be −0.69 kcal/mol, which
concentrate on the hydrogen atoms. For the ESP-mapped molecular vdW
surface of methane shown in Figure b, the global maxima on the CH4 surface
are found to be +8.70 kcal/mol, and the positive regions are
localized on the hydrogen atoms. The global minima (−2.70 kcal/mol)
are located on the carbon atom. The great difference between silane
and methane is caused by the fact that the electronegativities of
the silicon atom, carbon atom, and hydrogen atom are 1.90, 2.55, and
2.20, respectively. Hence, the bonding pairs in the Si–H bonds
of silane are biased toward the hydrogen atoms, while the bonding
pairs in the C–H bonds of methane are biased toward the carbon
atom. This results in observation that the positive regions are localized
on the silicon atom in silane and the hydrogen atoms in methane. It
is concluded that silane and methane have dramatically different distributions
of reactive regions and the BDE of the Si–H bond is weaker
than that of the C–H bond in methane. Besides, silane has a
larger nucleophilic region. These reasons result in the lower barrier
energies of H-abstraction reactions from silane.For disilane,
Wu et al.[24] found that
its reaction with H has three pathways, which is a special feature
of disilane compared with ethane. In this work, only the H-abstraction
pathway was investigated. The barrier energies of H-abstraction reactions
from disilane and ethane are 3.9 and 10.5 kcal/mol with H attacking
and 7.8 and 15.0 kcal/mol with CH3 attacking, respectively,
showing the same trends as the case of silane and methane. The lower
barrier energies of disilane than ethane are also in accordance with
the order of Si–H and C–H BDEs in disilane and ethane.[33] Similar to the case of silane and methane, Figure c,d shows that the
local electrophilic capacities on the hydrogen atoms of disilane are
weaker than those of ethane, which are strongly correlated with the
lower barrier energy of H-abstraction from disilane.Methylsilane
has two types of heavy-atom sites for H-abstraction, i.e., the primary carbon site and the primary silicon site. Figure shows that the barrier
energies of H-abstraction from the primary silicon site in methylsilane
are 4.5 and 9.8 kcal/mol with H and CH3 attacking, respectively,
which are much lower than those on the primary carbon site in ethane
(10.5 and 15.0 kcal/mol). Compared with the H-abstraction from the
primary silicon site in disilane, the barrier energies of H-abstraction
from the primary silicon site in methylsilane are higher, which are
the same as the trend in BDEs of disilane (89.1 kcal/mol[33]) and methylsilane (92.7 kcal/mol[33]). As seen from Figure , it is interesting to find that the barrier
energy of H-abstraction from the primary carbon site in methylsilane
with H attacking is higher than H-abstraction from ethane, while the
order is opposite for H-abstraction with CH3 attacking.
This phenomenon will be discussed in detail in the next paragraph
together with the case in DMS and propane.For DMS and propene,
the barrier energies of H-abstraction reactions
from the secondary silicon site in DMS and the secondary carbon site
in propane are 4.3 and 8.2 kcal/mol with H attacking and 10.0 and
12.8 kcal/mol with CH3 attacking, respectively. The lower
barrier energies of H-abstraction reactions from the silicon site
than those from the equivalent carbon site are in accordance with
the cases of silane and methane, disilane and ethane, and methylsilane
and ethane. As seen from Figure , the barrier energies of H-abstraction reactions from
the primary carbon sites in DMS and propane are 10.8 and 10.4 kcal/mol
with H attacking and 14.3 and 15.4 kcal/mol with CH3 attacking,
respectively, showing the same trends as those in methylsilane and
ethane. But it should be emphasized among all 32 H-abstraction reactions
in this work, and the reactions from the primary carbon sites in methylsilane
and DMS with H attacking are the only two with higher barrier energies
than the similar reactions in their alkane counterparts. As seen from Figure d–g, it can
be observed that both methylsilane and DMS have relatively large and
strong electron-affinitive regions in the primary carbon sites and
small electronegative regions, compared with their alkane counterparts.
Due to the uniform electron-affinitive configuration of the H atom,
the H attacking on the primary carbon sites in methylsilane and DMS
becomes relatively difficult than that in ethane and propane, respectively.
In contrast, CH3 attacking is less affected because of
the central electronegative feature of CH3 radical shown
in Figure S7 in the Supporting Information.For the H-abstraction from the tertiary silicon site in TrMS, the
barrier energies of H-abstraction reactions with H and CH3 attacking are about 2 and 0.5 kcal/mol lower than those from the
tertiary carbon site in IBT, respectively. For the H-abstraction from
the primary carbon sites in TrMS and IBT, the barrier energies of
H-abstraction reactions from TrMS with H and CH3 attacking
are about 0.2 and 0.8 kcal/mol lower than those from IBT, respectively.
Furthermore, the barrier energies of H-abstraction reactions from
the primary carbon sites in TeMS and NPT are 10.2 and 14.1 kcal/mol
with H attacking and 14.1 and 15.2 kcal/mol with CH3 attacking,
respectively. Different from methylsilane and DMS, TrMS and TeMS have
relatively small and weak electron-affinitive regions in the primary
carbon sites and strong electronegative regions, compared with their
alkane counterparts. As a result, the H-abstraction reactions from
the primary carbon sites in TrMS and TeMS have lower barrier energies
than the similar reactions in their alkane counterparts, regardless
of which radical attacks.Figure compares
the barrier energies for H-abstraction reactions from silicon sites
in silanes and equivalent carbon sites in their alkane counterparts
and those from the primary carbon sites in silanes and their alkane
counterparts, respectively, to better understand the effect of the
number of methyl branches. As seen from Figure a, the barrier energies of H-abstraction
from silicon sites in silanes with H attacking decrease as the number
of methyl branches increases, while those with CH3 attacking
have the opposite trend. This is different from the H-abstraction
from equivalent carbon sites in their alkane counterparts, as shown
in Figure b. The BDEs
of Si–H bonds are 91.7, 92.7, 93.5, and 94.7 kcal/mol for silane,
methylsilane, DMS, and TrMS, respectively, while the BDEs of equivalent
C–H bonds are 105.0, 100.5, 98.1, and 95.7 kcal/mol for methane,
ethane, propane, and IBT, respectively.[33] Hence, the increase of barrier energies for H-abstraction reactions
from silicon sites in silanes with CH3 attacking and the
decrease of barrier energies for H-abstraction reactions from equivalent
carbon sites in their alkane counterparts with H and CH3 attacking, as the number of methyl branches increases, are associated
with the trends of corresponding BDEs. As a result, the barrier energy
of H-abstraction from the tertiary silicon site in TrMS with CH3 attacking becomes very close to that from the tertiary carbon
site in IBT. It can be found from Figure a,e,f,h that the nucleophilic capacity of
the H atom on the silicon sites increases with the increasing number
of methyl branches, which results in the increasing stability of reactive
complexes and consequently lower barrier energies for the H-abstraction
from silanes with H attacking. Furthermore, the barrier energies of
H-abstraction reactions from the primary carbon sites in both silanes
and their alkane counterparts with H and CH3 attacking
have generally less apparent trends, as shown in Figure c,d.
Figure 3
Calculated barrier energies
with ZPE corrected for H-abstraction
reactions from (a) silicon sites in silanes (square) and (b) equivalent
carbon sites in their alkane counterparts (circle) with H attacking
(hollow) and CH3 attacking (solid), and from the primary
carbon sites in silanes (triangle) and their alkane counterparts (diamond)
with (c) H attacking (hollow) and (d) CH3 attacking (solid).
Calculated barrier energies
with ZPE corrected for H-abstraction
reactions from (a) silicon sites in silanes (square) and (b) equivalent
carbon sites in their alkane counterparts (circle) with H attacking
(hollow) and CH3 attacking (solid), and from the primary
carbon sites in silanes (triangle) and their alkane counterparts (diamond)
with (c) H attacking (hollow) and (d) CH3 attacking (solid).
Rate Constants of H-Abstraction
from Silanes
and Alkanes
Silane and Methane
For the calculated
rate constants, the Arrhenius fit parameters (A, n, and Ea) of all investigated
reactions are listed in Table . The calculated rate constants of H-abstraction reactions
from silane and methane with H attacking (R1, R3) and CH3 attacking (R2, R4) over 600–2000 K are shown in Figure . Besides, the calculated
rate constants in this work are compared with the experimental and
calculated results in the literature. As mentioned above, the rate
constant for H-abstraction from silane with H attacking was measured
and calculated by many groups, providing more literature results than
other silanes. As shown in Figure a, the calculated rate constant of R1 in this work
is a little lower than those calculated by Peukert et al.[30] and Wu et al.,[24] and
a little faster than that calculated by Qi and Sun[25] and Espinosa-Garcia et al.,[23] showing a generally central location in the distribution of available
calculated results. Furthermore, the present rate constant is also
very close to the measured results by Peukert et al.[30]
Table 2
Arrhenius Fit Parameters of Rate Constants
(A, n, and Ea) per H Atom for the Investigated Reactionsa
no.
reactions
A
n
Ea
1
SiH4 + H = SiH3 + H2
4.878 × 106
2.224
2791.7
2
SiH4 + CH3 = SiH3 + CH4
8.526 × 10–1
3.952
5712.9
3
CH4 + H = CH3 + H2
1.998 × 103
3.110
9135.0
4
CH4 + CH3 = CH3 + CH4
1.061 × 10–3
4.595
12041.0
5
Si2H6 + H = Si2H5 + H2
4.426 × 107
1.987
2547.8
6
Si2H6 + CH3 = Si2H5 + CH4
3.859 × 100
3.753
4815.1
7
C2H6 + H = C2H5 + H2
9.188 × 103
2.950
6765.7
8
C2H6 + CH3 = C2H5 + CH4
9.727 × 10–4
4.663
9698.6
9
CH3SiH3 + H = CH2SiH3 + H2
1.150 × 105
2.666
7588.2
10
CH3SiH3 + CH3 = CH2SiH3 + CH3
1.290 × 101
4.027
10348.0
11
CH3SiH3 + H = CH3SiH2 + H2
2.280 × 107
2.072
2990.7
12
CH3SiH3 + CH3 = CH3SiH2 + CH3
2.726 × 100
3.700
6754.5
13
(CH3)2SiH2 + H = CH3SiH2CH2 + H2
5.389 × 103
3.008
6838.7
14
(CH3)2SiH2 + CH3 = CH3SiH2CH2 + CH4
1.716 × 10–2
4.393
9629.7
15
(CH3)2SiH2 + H = CH3SiHCH2 + H2
1.808 × 107
2.118
2817.1
16
(CH3)2SiH2 + CH3 = CH3SiHCH2 + CH4
4.518 × 101
3.489
7192.2
17
C3H8 + H = nC3H7 + H2
8.637 × 103
3.015
6798.2
18
C3H8 + CH3 = nC3H7 + CH4
2.884 × 104
4.583
10160.0
19
C3H8 + H = iC3H7 + H2
2.836 × 104
2.787
4910.2
20
C3H8 + CH3 = iC3H7 + CH4
2.601 × 10–3
4.549
7923.0
21
(CH3)3SiH + H = (CH3)2SiHCH2 + H2
1.260 × 105
2.595
7380.2
22
(CH3)3SiH + CH3 = (CH3)2SiHCH2 + CH3
3.860 × 10–2
4.008
10199
23
(CH3)3SiH + H = (CH3)3Si + H2
4.590 × 107
2.040
2856.8
24
(CH3)3SiH + CH3 = (CH3)3Si + CH3
1.281 × 101
3.621
7756.7
25
(CH3)3CH + H = (CH3)2CHCH2 + H2
1.390 × 105
2.596
7844.7
26
(CH3)3CH + CH3 = (CH3)2CHCH2 + CH3
4.646
9836.8
27
(CH3)3CH + H = (CH3)3C + H2
4.300 × 105
2.528
3487.7
28
(CH3)3CH + CH3 = (CH3)3C + CH3
2.191 × 10–1
4.023
7309.9
29
Si(CH3)4 + H = Si(CH3)3CH2 + H2
9.851 × 103
2.911
6485.2
30
Si(CH3)4 + CH3 = Si(CH3)3CH2 + CH4
2.363 × 10–3
4.394
9336.9
31
C(CH3)4 + H = C(CH3)3CH2 + H2
9.244 × 103
2.886
7432.9
32
C(CH3)4 + CH3 = C(CH3)3CH2 + CH4
2.087 × 10–4
4.649
9994.3
Units are cm3, mol, s,
cal.
Figure 4
Calculated rate constants of H-abstraction from silane and methane
with (a) H attacking and (b) CH3 attacking at the DLPNO-CCSD(T)/cc-pVTZ//M06–2X/cc-pVTZ
level. Black and red solid lines denote the calculated results of
silane and methane in this work, respectively. Blue hollow circle
denote the measured results of silane by Peukert et al.[30] Black, orange, blue, purple, and green dashed
lines denote calculated rate constants of silane by Peukert et al.[30] at the G4 level, Peukert et al.[30] at the CBS-QB3 level, Wu et al.[24] at the CCSD(T)/6–311++G(3df,2p)//CCSD(T)/6–311+G(d,p)
level, Qi and Sun[25] at the G2//QCISD/6–311+G(df,
pd) level, and Espinosa-Garcia et al. using the ab initio method.[23]
Calculated rate constants of H-abstraction from silane and methane
with (a) H attacking and (b) CH3 attacking at the DLPNO-CCSD(T)/cc-pVTZ//M06–2X/cc-pVTZ
level. Black and red solid lines denote the calculated results of
silane and methane in this work, respectively. Blue hollow circle
denote the measured results of silane by Peukert et al.[30] Black, orange, blue, purple, and green dashed
lines denote calculated rate constants of silane by Peukert et al.[30] at the G4 level, Peukert et al.[30] at the CBS-QB3 level, Wu et al.[24] at the CCSD(T)/6–311++G(3df,2p)//CCSD(T)/6–311+G(d,p)
level, Qi and Sun[25] at the G2//QCISD/6–311+G(df,
pd) level, and Espinosa-Garcia et al. using the ab initio method.[23]Units are cm3, mol, s,
cal.Figure shows huge
discrepancies between the rate constants of H-abstraction reactions
from silane and methane with either H attacking or CH3 attacking.
The rate constants of H-abstraction reactions from silane with H and
CH3 attacking are much faster than those from methane,
which are in good accordance with their lower barrier energies. Strong
variations in the ratios of k1/k3 and k2/k4 over the investigated temperature region can
be observed from Figure , revealing that the analogy between the H-abstraction reactions
from silane and methane is weak. Although the two counterparts have
similar configurations, silane is much more active than methane.
Disilane, Methylsilane, and Ethane
Figure shows the
calculated rate constants of H-abstraction reactions from disilane,
ethane, and methylsilane with H attacking (R5, R7, R9, and R11) and
CH3 attacking (R6, R8, R10, and R12) at the DLPNO-CCSD(T)/cc-pVTZ//M06–2X/cc-pVTZ
level. It can be found from Figure a that the calculated rate constant of H-abstraction
from disilane with H attacking is a little lower than that reported
by Wu et al.[24] at the CCSD(T)/6–311++G(3df,2p)//CCSD(T)/6–311+G(d,p)
level. Compared to the H-abstraction from the primary carbon site
in ethane, the H-abstraction reactions from the primary silicon sites
in disilane and methylsilane are much faster, which is similar to
the case of silane and methane. Strong variations in the ratios of k5/k7 and k6/k8 over the investigated
temperature region can be observed from Figure , revealing the weak analogy between the
H-abstraction reactions from disilane and ethane. A similar phenomenon
can also be observed for k11/k7 and k12/k8, which reveals the weak analogy between the H-abstraction
reactions from methylsilane and ethane. In contrast, for the H-abstraction
reactions from the primary carbon sites in methylsilane and ethane,
the rate constants are very close, regardless of which radical attacks.
This demonstrates the strong analogy between the H-abstraction reactions
from the primary carbon sites, especially compared with the cases
of H-abstraction reactions from silicon sites and equivalent carbon
sites.
Figure 5
Calculated rate constants of H-abstraction from disilane, methylsilane,
and ethane with (a) H attacking and (b) CH3 attacking at
the DLPNO-CCSD(T)/cc-pVTZ//M06–2X/cc-pVTZ level. Black and
red solid lines denote the calculated results of disilane and ethane
in this work, respectively. Black dashed line denotes the calculated
results of disilane by Wu et al.[24] at the
CCSD(T)/6–311++G(3df,2p)//CCSD(T)/6–311+G(d,p) level.
Calculated rate constants of H-abstraction from disilane, methylsilane,
and ethane with (a) H attacking and (b) CH3 attacking at
the DLPNO-CCSD(T)/cc-pVTZ//M06–2X/cc-pVTZ level. Black and
red solid lines denote the calculated results of disilane and ethane
in this work, respectively. Black dashed line denotes the calculated
results of disilane by Wu et al.[24] at the
CCSD(T)/6–311++G(3df,2p)//CCSD(T)/6–311+G(d,p) level.
DMS and Propane, TrMS
and IBT
The
calculated rate constants of H-abstraction reactions from DMS and
propane with H attacking (R13, R15, R17, and R19) and CH3 attacking (R14, R16, R18, and R20) are shown in Figure . Figure a,c shows that the H-abstraction reactions
from the primary carbon sites in DMS and propane have almost parallel
rate constants. In more detail, the H-abstraction reaction from the
primary carbon site in DMS with H attacking (R13) is about two times
slower than that for propane (R17), while that for DMS with CH3 shown in Figure c, the H-abstraction from the H atom in the primary carbon
site in DMS by CH3 is attached to one order faster than
the H-abstraction from propane (R18). The trend that k13 is slower than k17 while k14 is faster than k18 is strongly related to that of barrier energies for corresponding
reactions, which is described in Section . As shown in Figure b,d, the H-abstraction reactions from the
secondary silicon site in DMS with both H and CH3 attacking
are much faster than the H-abstraction reactions from the secondary
carbon site in propane, which follows the rule observed in the cases
of silane and methane, disilane and ethane, and methylsilane and ethane.
Figure 6
Calculated
rate constants of H-abstraction from DMS and propane
with (a, b) H attacking and (c, d) CH3 attacking at the
DLPNO-CCSD(T)/cc-pVTZ//M06–2X/cc-pVTZ level. Black and red
solid lines denote the calculated results of DMS and propane in this
work, respectively.
Calculated
rate constants of H-abstraction from DMS and propane
with (a, b) H attacking and (c, d) CH3 attacking at the
DLPNO-CCSD(T)/cc-pVTZ//M06–2X/cc-pVTZ level. Black and red
solid lines denote the calculated results of DMS and propane in this
work, respectively.Figure a shows
that the rate constants of H-abstraction reactions from the primary
carbon sites in TrMS (R21) and IBT (R25) with H attacking are close
to each other over the investigated temperature region. For the reactions
with CH3 attacking shown in Figure c, the rate constant of the reaction for
TrMS (R22) is slightly higher than that for IBT (R26), especially
under low-temperature conditions. Figure b,d shows that the H-abstraction from the
tertiary silicon site in TrMS with H attacking (R23) is much faster
than that from the tertiary carbon site in IBT (R27), while the discrepancies
decrease between the rate constants of the two CH3 attacking
reactions (R24, R28). From the results of the first five cases (silane
and methane, disilane and ethane, methylsilane and ethane, DMS and
propane, and TrMS and IBT), it can be concluded that huge differences
exist between the Si atom and C atom, making H-abstraction reactions
from silicon sites in silanes cannot be directly referred to similar
reactions from equivalent carbon sites in their alkane counterparts.
Figure 7
Calculated
rate constants of H-abstraction from TrMS and IBT with
(a, b) H attacking and (c, d) CH3 attacking at the DLPNO-CCSD(T)/cc-pVTZ//M06–2X/cc-pVTZ
level. Black and red solid lines denote the calculated results of
TrMS and IBT in this work, respectively.
Calculated
rate constants of H-abstraction from TrMS and IBT with
(a, b) H attacking and (c, d) CH3 attacking at the DLPNO-CCSD(T)/cc-pVTZ//M06–2X/cc-pVTZ
level. Black and red solid lines denote the calculated results of
TrMS and IBT in this work, respectively.Figure compares
the calculated rate constants of H-abstraction reactions from silicon
sites in silanes and equivalent carbon sites in their alkane counterparts.
In general, the rate constants of H-abstraction reactions from silicon
sites in silanes with H attacking and equivalent carbon sites in their
alkane counterparts with H and CH3 attacking increase as
the number of methyl branches increases, which agrees with the decrease
of barrier energies shown in Figure . In contrast, the rate constants of H-abstraction
reactions from silicon sites in silanes with CH3 attacking
have no evident trend with the increasing number of methyl branches.
As can be seen from Figure b, the rate constants for the four silanes follow the trend
of silane ∼ DMS > TrMS > methylsilane, while the trend
of barrier
energies is silane < MS < DMS < TrMS. This discrepancy may
come from the influence of entropy caused by the linear configurations
of activated complexes in corresponding reactions of silane and methylsilane.
Figure 8
Calculated
rate constants of H-abstraction reactions from silicon
sites in silanes and equivalent carbon sites in their alkane counterparts
with (a) H attacking and (b) CH3 attacking.
Calculated
rate constants of H-abstraction reactions from silicon
sites in silanes and equivalent carbon sites in their alkane counterparts
with (a) H attacking and (b) CH3 attacking.
TeMS and NPT
Figure compares the calculated rate constants of
H-abstraction reactions from TeMS and NPT with H attacking (R29, R31)
and CH3 attacking (R30, R32), along with measured and calculated
results in the literature. Figure a shows that the calculated rate constant of H-abstraction
from TeMS with H attacking in this work is slightly higher than the
calculated results by Oueslati et al.[26] and Peukert et al. at the CBS-QB3 level[30] and lower than the measured results by Peukert et al.[30] and their calculated results at the G4 level,[30] presenting a roughly central location in the
distribution of available measured and calculated results. In the
present calculated results, the rate constant of H-abstraction from
TeMS is around two times higher than that for NPT. For the H-abstraction
reactions from TeMS with CH3 attacking, the present calculated
rate constant is lower than the calculated results by Peukert et al.,[30] as shown in Figure b. It can also be observed from this figure
that the calculated rate constant of H-abstraction from TeMS with
CH3 attacking is about 2–3 times higher than that
for NPT over the investigated temperature region.
Figure 9
Calculated rate constants
of H-abstraction from TeMS and NPT with
(a) H attacking and (b) CH3 attacking at the DLPNO-CCSD(T)/cc-pVTZ//M06–2X/cc-pVTZ
level. Black and red solid lines denote the calculated results of
TeMS and NPT in this work, respectively. Blue hollow circles denote
the measured results of TeMS by Peukert et al.[30] Black and blue dashed lines denote the calculated results
of TeMS by Peukert et al.[30] at G4 and CBS-QB3
levels, respectively. Purple dashed lines denote the calculated results
of TeMS by Oueslati et al.[26] at the CCSD(T)//MP2/cc-pVTZ
level.
Calculated rate constants
of H-abstraction from TeMS and NPT with
(a) H attacking and (b) CH3 attacking at the DLPNO-CCSD(T)/cc-pVTZ//M06–2X/cc-pVTZ
level. Black and red solid lines denote the calculated results of
TeMS and NPT in this work, respectively. Blue hollow circles denote
the measured results of TeMS by Peukert et al.[30] Black and blue dashed lines denote the calculated results
of TeMS by Peukert et al.[30] at G4 and CBS-QB3
levels, respectively. Purple dashed lines denote the calculated results
of TeMS by Oueslati et al.[26] at the CCSD(T)//MP2/cc-pVTZ
level.Figure compares
the rate constants of H-abstraction reactions from primary carbon
sites in the last four cases (methylsilane and ethane, DMS and propane,
TrMS and IBT, and TeMS and NPT). Compared with the situations in Figure , relatively strong
analogy can be concluded for this kind of reaction between silanes
and their alkane counterparts. For methylsilane and ethane, their
H-abstraction reactions from primary carbon sites have very close
rate constants, regardless of which radical attacks. Similar situation
also exists for the H-abstraction reactions from primary carbon sites
in TrMS and IBT with H attacking. Under other situations, the H-abstraction
reactions from primary carbon sites in TrMS and IBT have generally
parallel rate constants, implying that discrepancies mainly exist
in pre-exponential factors.
Figure 10
Calculated rate constants of H-abstraction
reactions from primary
carbon sites in silanes and their alkane counterparts with (a) H attacking
and (b) CH3 attacking.
Calculated rate constants of H-abstraction
reactions from primary
carbon sites in silanes and their alkane counterparts with (a) H attacking
and (b) CH3 attacking.
Conclusions
In this work, H-abstraction
reactions from silanes (silane, disilane,
methylsilane, DMS, TrMS, and TeMS) and their alkane counterparts (methane,
ethane, propane, IBT, and NPT) with H and CH3 attacking
were theoretically investigated to reveal differences and similarities
between silane systems and alkane systems. Major conclusions are summarized
below.In general,
the barrier energies of
H-abstraction reactions from silicon sites in silanes are found to
be much lower than those from equivalent carbon sites in their alkane
counterparts, which are in accordance with the lower BDEs of Si–H
bonds than those of equivalent C–H bonds. This can be explained
by the different distributions of reactive regions of silanes and
their alkane counterparts demonstrated by the different ESP-mapped
molecular vdW surfaces.As the number of methyl branches increases,
the barrier energies for H-abstraction reactions from silicon sites
in silanes with CH3 attacking and equivalent carbon sites
in their alkane counterparts with H and CH3 attacking follow
the trends of corresponding BDEs, which results in only slightly lower
barrier energy of H-abstraction from the tertiary silicon site in
TrMS with CH3 attacking than that from the equivalent carbon
site in IBT. Exceptionally, the barrier energies for H-abstraction
reactions from silicon sites in silanes with H attacking do not follow
the trend of corresponding BDEs due to the increasing nucleophilic
capacity of H atom on the silicon sites.The H-abstraction reactions from the
primary carbon sites in silanes have generally lower barrier energies
than the similar reactions in their alkane counterparts, while those
in methylsilane and DMS with H attacking are the only two with higher
barrier energies. The two exceptions are mainly caused by the relatively
difficult H attacking on the primary carbon sites in methylsilane
and DMS due to their relatively large and strong electron-affinitive
regions in the primary carbon sites and small electronegative regions.In general, the rate constants
of
H-abstraction reactions from silicon sites in silanes with H attacking
and equivalent carbon sites in their alkane counterparts with H and
CH3 attacking increase as the number of methyl branches
increases, which agrees with the decrease of barrier energies. In
contrast, the rate constants of H-abstraction reactions from silicon
sites in silanes with CH3 attacking have no evident trend.
The H-abstraction reactions from silicon sites in silanes have much
higher rate constants than those from equivalent carbon sites in their
alkane counterparts, while the discrepancies become generally greater
as the temperature decreases, except for the case of TrMS and IBT
with CH3 attacking.Compared with the H-abstraction reactions
from silicon sites and equivalent carbon sites, the rate constants
of H-abstraction reactions from primary carbon sites in silanes and
their alkane counterparts show relatively strong analogy, especially
for the situations of methylsilane and ethane with H and CH3 attacking and TrMS and IBT with H attacking.
Computational Details
Geometries and frequencies
were calculated employing the density
functional theory (DFT) method M06–2X[34] with the cc-pVTZ basis set.[35] A frequency
scaling factor of 0.948 was used to correct zero-point energy (ZPE).[36] To facilitate the calculation of TeMS and NPT
with five heavy atoms, the domain-based local pair natural orbital
coupled cluster with perturbative triple excitations (DLPNO-CCSD(T))
method proposed by Liakos et al.[37] was
employed in the single-point energy (SPE) calculation. This method
can evaluate coupled cluster energy with higher efficiency at less
time and accuracy costs,[38] has an uncertainty
of about 0.5 kcal/mol compared with the standard CCSD(T) method,[37] and has been widely applied in SPE calculations
of systems with similar sizes.[39−42] Many benchmark datasets show that this method can
provide approximately the same accuracy and reliability as the current
standard CCSD(T) method.[43,44] For open shells, the
accuracy of the DLPNO calculations can be significantly improved through
an iterative version of the triples correction method.[44,45] Subhasish et al.[46] assessed the accuracy
of the DLPNO-CCSD(T) method against the CCSD(T) method in determining
the barrier heights and reaction energetics for a series of hydrogen
atom transfer reactions and suggested the standard deviation for the
open-shell systems as 0.79 kcal/mol (within 1 kcal/mol). Among the
three truncation thresholds (TightPNO, NormalPNO, and LoosePNO) in
the DLPNO-CCSD(T) method, the first one with the highest calculation
accuracy was adopted in this work following the setting adopted in
the work of Sun et al.[47] All of the quantum
chemical calculations, including geometry optimization, frequency
analysis, and relaxed scan were performed using the Gaussian 09 program.[48] The SPEs were computed using the ORCA 4.2.1
program.[49] Furthermore, the ESP-mapped
molecular vdW surfaces were also calculated based on the wavefunction
analyses using the Multiwfn 3.8 code[50] to
provide insight into the differences and similarities in H-abstraction
barrier energies between silanes and their alkane counterparts. The
wavefunctions used in the ESP analyses were calculated at the M06–2X/cc-pVTZ
level. All isosurface maps were generated based on the outputs of
Multiwfn using the VMD 1.9.3 program.[50,51]In this
paper, the rate constants of H-abstraction reactions were
calculated using conventional transition state theory (CTST), which
was implemented in the KiSThelP code.[52] Conventional TST calculations only require information of the saddle
points and reactants. The rate constant of a bimolecular reaction
is described by the following equationwhere σ is the reaction path
degeneracy, kb is Boltzmann constant, T is
the temperature, h is Planck constant, NA is Avogadro number, V* is the difference
in zero-point excluded potential energy between transition states
(TSs) and reactants, QTS and QR denote the total partition functions of the TS and reactants
with the translational partition functions expressed in per unit volume.The one-dimensional asymmetric Eckart correction was applied to
account for tunneling. Low-frequency internal rotations of CH3 groups were treated as hindered rotations using the hindered
rotor density of states (HRDS) method,[53] which is implemented in the KiSThelP program. The rotational barrier
energies were obtained through CH3 scanning at an interval
of 10° at the same level of theory as optimization and frequency
calculation. As shown in Figure S1, it
can be found that the rotational barrier energies are similar between
the CH3 groups of methylsilane, DMS, TrMS, and TeMS, which
are lower than those of their alkane counterparts.In this work,
the rate constants of all reactions were obtained
per H atom, while some measured and calculated results in the literature,
which are per molecule or per site, were also converted to be per
H atom for comparison. To verify the rationality of the chosen calculation
method, the calculated rate constants for H-abstraction reactions
from methane, ethane, propane, and NPT with H and CH3 attacking
were compared with previously measured and calculated results in the
literature. As shown in Figures S2–S6 in the Supporting Information, it can be found that the calculated
results in this work are generally in good agreement with previously
measured and calculated results.
Authors: D O Kashinski; G M Chase; R G Nelson; O E Di Nallo; A N Scales; D L VanderLey; E F C Byrd Journal: J Phys Chem A Date: 2017-03-09 Impact factor: 2.781