Geneviève N Boice1, Brian O Patrick2, Robin G Hicks1. 1. Department of Chemistry, University of Victoria, Victoria, BC V8W2Y2, Canada. 2. Crystallography Laboratory, Department of Chemistry, University of British Columbia, Vancouver, BC V6T1Z1, Canada.
Abstract
The synthesis of diindolylamines via the palladium-catalyzed cross-coupling of aminoindoles and bromoindoles has been investigated, and efficient coupling conditions using BrettPhos, Pd(OAc)2, K2CO3, and tBuOH have been identified. The diindolylamines were found to be unstable in ambient conditions. Blocking the reactive 3-position of the bromoindole coupling partner with a tert-butyl group results in a diindolylamine with improved air stability. NMR, CV, and UV-vis studies on an asymmetrically substituted 3-tert-butyl-3'H-diindolylamine indicate that the instability of the diindolylamine substrates is likely due to oxidative oligomerization. Literature conditions used for the preparation of 3-tert-butylindoles afforded only the indole tetramer. The presence of water during the alkylation reaction was identified as the cause of the formation of the tetramer. Replacing hygroscopic tBuOH with nonhygroscopic tBuCl as the alkylating reagent provided access to 7-bromo-3-tert-butyl indole.
The synthesis of diindolylamines via the palladium-catalyzed cross-coupling of aminoindoles and bromoindoles has been investigated, and efficient coupling conditions using BrettPhos, Pd(OAc)2, K2CO3, and tBuOH have been identified. The diindolylamines were found to be unstable in ambient conditions. Blocking the reactive 3-position of the bromoindole coupling partner with a tert-butyl group results in a diindolylamine with improved air stability. NMR, CV, and UV-vis studies on an asymmetrically substituted 3-tert-butyl-3'H-diindolylamine indicate that the instability of the diindolylamine substrates is likely due to oxidative oligomerization. Literature conditions used for the preparation of 3-tert-butylindoles afforded only the indole tetramer. The presence of water during the alkylation reaction was identified as the cause of the formation of the tetramer. Replacing hygroscopic tBuOH with nonhygroscopic tBuCl as the alkylating reagent provided access to 7-bromo-3-tert-butyl indole.
Diindolylamine structures
wherein the indolyl moieties are connected
through an amine substituent on the benzene ring (Scheme , compound 1)
are of interest in drug discovery and organic electronics. They have
been investigated on their own and as part of larger molecules for
uses in medicinal therapy areas, such as oncology[1−3] and Alzheimer’s
disease,[4,5] and as hole transport agents[6] and organic electroluminescent materials (Figure ).[7−10] During our investigations into
the design of new chromophores for metal complexation, we required
a synthesis of structural motifs of this type, specifically derivatives
of 1 in which R = R′ = H.
Scheme 1
General Retrosynthetic
Plan for the Synthesis of Diindolylamines 1
Figure 1
Examples of diindolyl amine-containing structures investigated
for medicinal therapies and electroluminescent devices.
Examples of diindolyl amine-containing structures investigated
for medicinal therapies and electroluminescent devices.We envisioned the preparation of the diindolylamines via
palladium-catalyzed
cross-coupling Buchwald–Hartwig amination of the appropriate
bromoindole and aminoindole compounds (Scheme ). The position of the halide and amine on
the indole partners would dictate the connectivity of the indole halves
in the diindolylamines, and because many bromo- and aminoindoles are
commercially available or are relatively easy to access synthetically,
a wide variety of derivatives could potentially be accessed by this
methodology. Reported examples for the preparation of diindolylamine-type
structures that contain synthetic procedures and specific experimental
details are limited. In cases where R′ = H, the preparation
of the diindolyl structures via Buchwald–Hartwig amination
(BHA) using two indole coupling partners has been reported, albeit
uncommonly. Almost all the literature examples involve the coupling
of indoles where the indole nitrogen on at least one, and usually
both, coupling partners has been protected.[4,5] In
cases where R′ = alkyl or aryl, synthesis is most often performed
by first forming a secondary amine 3, which consists
of an indole and the alkyl or aryl group, and then attaching the second
indole ring via cross-coupling of the secondary amine and a bromoindole.[7,11]We ideally wished to perform the BHA reaction on unprotected
indoles,
thereby avoiding extra protection and deprotection steps. However,
the lack of examples using unprotected indoles could indicate that
protection of the indole nitrogen on one or both coupling partners
is necessary for reasons of selectivity and reactivity. Indoles contain
two reactive sites, the indole N–H and the C-3 position, that
can compete with the intended reaction between the aniline moiety
and the aryl bromide.[12,13] This presents a potential selectivity
problem during the coupling reaction. Literature reports of unwanted
C–C coupling at the C-3 exist, but it tends to occur under
specific combinations of catalyst and ligand and appears to be most
problematic with highly hindered (o-substituted)
anilines.[14] C–N coupling between
the aryl bromide and the indole N–H is of greater concern,
since many examples of this type of reaction are found in the literature.[15] There are also potential issues inherent in
the structure of the diindolylamine products 1 where
R = H. The structure of these compounds makes them prospective ligands
(Figure ). Under basic
conditions in the presence of a metal, i.e., the BHA reaction environment,
the diindolylamines may form coordination complexes with the metal,
effectively poisoning the BHA catalyst and stalling the reaction.
Figure 2
Examples
of diindolylamine structures that can potentially serve
as ligands for metal complexation.
Examples
of diindolylamine structures that can potentially serve
as ligands for metal complexation.Because the nature of the coupling partners, the precatalyst, ligand,
solvent, and base can all vastly affect the outcome of the Buchwald–Hartwig
amination reaction, a wide variety of catalysts, ligands, and reaction
conditions have been developed for this transformation.[15−19] While this introduces challenges in the selection of reagents and
conditions for previously unreported coupling partners, it has given
a broad scope to the reaction,[20,21] and we felt that a
judicious choice of the metal catalyst and ligands could effectively
control the selectivity of the reaction with unprotected indoles and
could also minimize coordination of the diindolyl product.
Results
and Discussion
To evaluate whether protection of the indoles
was necessary for
the success of the proposed synthetic methodology, BHA reactions involving
both two unprotected indoles and one protected and one unprotected
indole were investigated. Because of the commercial availability of
the starting bromo and aminoindoles, the 6,6′- and 7,7′-diindolyl
systems (Table compounds 8a, 8b, 9a, and 9b,
respectively) were chosen as the target molecules for this exploratory
chemistry.
Table 1
Identification of Reaction Conditions
for the Formation of Diindolylamines using Buchwald–Hartwig
Amination
reaction
conditions
indole
catalyst
entry
NH2
Br
precatalyst
ligand
base
solvent
productsa
1
7
5a
Pd(dppf)Cl2
dppf
NaOtBu
1,4-dioxane
N.R.
2
7
5a
Pd(OAc)2
XPhos
Cs2CO3
t-BuOH
N.R.
3
7
5a
Pd2(dba)2
XPhos
NaOtBu
t-BuOH
N.R.
4
7
5a
Pd(OAc)2
XPhos
K2CO3
t-BuOH
9a (incomplete conversion)
5
6
4b
Pd(OAc)2
XPhos
K2CO3
t-BuOH
8b
4a
6
6
4b
Pd(OAc)2
XPhos
KOtBu
t-BuOH
4a major
8b trace
7
6
4b
Pd(OAc)2
XPhos
K2CO3/Et3N
t-BuOH
8a trace and unknown
8
6
4b
Pd(OAc)2
BrettPhos
K2CO3
t-BuOH
8a
4a
9
7
5a
Pd(OAc)2
BrettPhos
K2CO3
t-BuOH
9a major
N.R., no reaction.
N.R., no reaction.
Protection
of Bromoindoles
Protection of the bromoindole
was implemented in preference to the aminoindole because of potential
difficulties in selectively protecting the indole nitrogen in the
presence of an aniline nitrogen. A tert-butyl silyl
ether protecting group was chosen because its stability under basic
conditions and heat might allow the protected derivatives to remain
intact during the Buchwald–Hartwig coupling reaction.Treatment of 6-bromoindole 4a with NaH, followed by tert-butyldimethylsilyl chloride (TBDMSCl), gave the desired
compound 4b in a 55% yield after 15 min at room temperature
(Scheme ). Longer
reaction times and the addition of extra NaH were explored to try
to drive the reaction to completion; however, these attempts resulted
in lower yields. Monitoring the reaction using TLC showed that the
product was formed and then decomposed back to the starting material,
implying that unreacted H– deprotected the silyl
ether in a manner similar to F–.[22] The formation of the TBDMS-protected 7-bromoindole 5b was also successful; however, the reaction required overnight
reflux and still resulted in an incomplete reaction. The sluggish
reaction was attributed to the added steric hindrance imparted by
the 7-position substituent.
Scheme 2
Conditions for the TBDMS Protection
of 6-Bromoindole 4a
Buchwald–-Hartwig
Amination Conditions for Diindolylamine
Synthesis
Exploration of the BHA reaction conditions was
initiated using the unprotected 7-substituted indoles. Two promising
sets of conditions were identified on the basis of literature precedence.
The first combination was based on a reported example of BHA coupling
using unprotected 7-aminoindole.[23] The
conditions use a Josiphos-type (Pd(dppf)Cl2) ligand–catalyst
system, NaOtBu, and dioxane. This ligand–metal combination
is rarely reported for indolyl N–H coupling; when it is reported
for indolyl N–H coupling, the base is a weak inorganic base
such as Cs2CO3 or K2CO3,[24] which could indicate that selective
coupling is possible for this system when two unprotected indoles
are used. The second set of conditions was based on reported examples
of diindolyl formation using protected indoles and on the publications
of Buchwald et al. Reported metal–ligand systems for diindolyl
formation are palladium and either X-Phos[3−5] or XantPhos.[3] We also considered BrettPhos as potentially a
better ligand choice as it is known to be useful for BHA with primary
anilines.[25] Buchwald et al. have developed
ligands other than BrettPhos to perform the arylation of indole N–H,[26] which suggested that the BrettPhos–Pd
ligand–metal system might be selective for the desired aniline
coupling on the unprotected indoles.Table summarizes the initial exploration of the
BHA reaction conditions. Despite the literature precedence for the
BHA of 7-aminoindole 7 using Pd(dppf)Cl2,
these BHA conditions resulted in no observed reaction (entry 1). Likewise,
reactions using either Pd(OAc)2 or Pd(dba)2 as
the metal source, Xphos as the ligand, and either Cs2CO3 or NaOtBu also resulted in the recovery
of starting materials (entry 2 and 3, respectively). However, upon
changing the base to K2CO3, a slow, incomplete
reaction was observed (entry 4). Using the same conditions with 6-aminoindole 6 and TBDMS-protected 6-bromoindole 4b resulted
in formation of the desired product along with deprotection of the
6-bromoindole 4b (entry 5). The ratio of coupled product
to deprotected bromide varied with the number of equivalents of ligand
used. Higher ligand loadings resulted in a larger ratio of coupled
product to deprotected bromide. However, because ligand loadings of
0.3 equiv (relative to the aminoindole) still produced mixtures of
products, an alternative was necessary. Different bases, including
KOtBu and triethylamine, were explored but did not
yield better outcomes (entries 6 and 7, respectively).When
6-aminoindole and 6-bromo-1-TBDMS indole 4b were
submitted to a reaction with Pd(OAc)2, Brett-Phos, and
K2CO3 in refluxing tBuOH, the
products of the reaction were found to be deprotected bromide 4a and the unprotected 6,6′-aminodiindole 8a (entry 8). This suggested that when Brett-Phos was used as the ligand,
coupling of the unprotected bromoindole and unprotected aminoindole
might be occurring. When these reaction conditions were used on the
unprotected 7-amino and 7-bromoindoles, consumption of the starting
material was observed, and the major product of the reaction (by TLC)
was the desired 7,7′-aminodiindole 9a (entry 9).Identification of the aminodiindole products during reaction optimization
was done primarily using 1H NMR spectroscopy because the
products were isolated in small amounts, which was initially attributed
to the small scale of the reactions and low yields resulting from
incomplete reactions and the formation of mixtures of products. However,
upon scale-up of the reactions, it became clear that instability of
the aminodiindoles themselves was also an issue. During workup and
purification, the disappearance of the desired product was noted by
TLC, and a dark precipitate formed. The isolated desired product was
also observed to change from a soluble colorless compound to a dark
insoluble compound over minutes to days (depending on the substitution
pattern of the diindole system and whether the indole was protected).
The instability was greatest in solution, which prevented full characterization
of these compounds.We hypothesized that oxidation of the diindolylamine
compounds
to a diindolylmethene-type structure (Figure ) might be occurring in the presence of air.
Because of their extended conjugation, the oxidized compounds could
adopt a planar structure, causing them to be insoluble. To prevent
oxidation upon characterization, the completed reaction was transferred
to a glovebox following solvent removal on the Schlenk line. NMR characterization
of the crude reaction mixture was done using this method, yet even
under these rigorously air-free conditions the formation of a dark
precipitate was observed. The need for column chromatography to purify
the diindolylamines 8a, 8b, and 9a meant that isolation of clean material for characterization was
not possible.
Figure 3
Diindolylmethene derivative of 6,6′-diindolylamine 8a.
Diindolylmethene derivative of 6,6′-diindolylamine 8a.
Preparation of 3-tert-Butyl Indole
The insoluble nature of the bluish-black
precipitate that formed
following the palladium-catalyzed cross-coupling of 7-bromoindole
and 7-aminoindole prompted
consideration of solubilizing substituents that could be directly
installed on the indole starting materials. tert-Butyl
groups were selected because they could be introduced to the ring
by electrophilic aromatic substitution. Electrophilic aromatic substitution
at the 3-position of the indole ring is favored electronically,[27] but competing substitution at the 2-position
and 1-position can be problematic.[28] Many
protocols for the Friedel–Crafts alkylation of indoles suffer
from poor yields due to the formation of mixtures of products and
consequently difficult chromatographic separations. However, the selective
installation of tert-butyl groups at the 3-position
of indoles using unconventional Friedel–Crafts conditions has
been reported.[29] The described alkylation
employs K-10 montmorillonite clay and tert-butanol
under solvent-free microwave conditions and was reported to afford
isolated yields of 47–73% for a variety of indoles.However,
when we submitted 7-bromoindole 5a to these reaction
conditions, the desired 3-tert-butyl-substituted
product was isolated only as a very minor product. The major product
of the reaction was a relatively insoluble white powder with a 1H NMR spectrum that was incompatible with the structure of
the desired compound. The spectrum displayed two distinct indole N–H
signals, indicating the presence of chemically inequivalent indole
rings. The spectrum also exhibited a total of seven aromatic signals
and no tert-butyl signals. Taken together, this presented
the possibility that a dimerization or oligomerization reaction was
occurring.Further evidence for oligomerization was obtained
from the 13C NMR spectra, which showed a total of 16 signals,
all aromatic,
and from COSY and TOCSY NMR spectroscopy, which elucidated two sets
of coupled protons and revealed that one indole ring contained a hydrogen
at the C2-position while the other indole ring did not. This pointed
to a more complex structure than a simple dimer, and single-crystal
X-ray analysis revealed the compound to be the indole tetramer 10 (Figure and Tables S1–S3).
Figure 4
Chemical structure (left)
and X-ray crystal structure (right) of
the 7-bromoindole tetramer 10. Ellipsoids are represented
at the 50% probability level. Hydrogen atoms (except N–H hydrogens)
have been removed for clarity.
Chemical structure (left)
and X-ray crystal structure (right) of
the 7-bromoindole tetramer 10. Ellipsoids are represented
at the 50% probability level. Hydrogen atoms (except N–H hydrogens)
have been removed for clarity.While compounds similar to 10 have occasionally been
reported,[30,31] in one case as the product of a traditional
Freidel-Crafts alkylation,[32] the literature
did not provide insight into the cause of the tetramer formation under
our conditions. Since the only byproducts in the original paper describing
the alkylation using tert-butanol were those resulting
from N-alkylation of the indole, the experimental conditions were
scrutinized for potential differences between the literature and the
preparative conditions. One possible discrepancy was the introduction
of water to the reaction during the weighing and addition of tert-butanol. The tert-butanol was highly
deliquescent when handled in our ambient conditions, but no mention
of hygroscopic behavior was made in the reported procedure.Three reactions were performed to test the effect of water on the
reaction. In the first, no alkylating reagent was used and water was
added to the reaction. In the second, tert-butanol
was used and additional water was added (21.7 equiv). In the third, tert-butanol was replaced with 2-chloro-2-methylpropane
(a nonhygroscopic alkyl source). The outcomes of all three reactions
indicated that water was involved in the oligomerization reaction.
In the reaction with added water but no alkylating agent, the only
product observed was the tetramer (isolated in a 30% yield). Likewise,
only the tetramer was formed during the reaction using tert-butanol and added water. In contrast, in the reaction using 2-chloro-2-methylpropane,
the desired 3-substituted indole 11 was the major product,
and no tetramer was observed. While these studies implicate water
in the formation of the tetramer, it is also possible that adventitious
oxygen may be at least partially involved, as per previous reports.[31]The alkylation using 2-chloro-2-methylpropane
was then modified
to minimize the formation of di- and trialkylated byproducts that
were observed when 2-chloro-2-methylpropane was used. The dialkylated
compound was tentatively assigned to 3,5-di-tert-butylindole
on the basis of 1H and COSY NMR spectra. The structure
of the trialkylated compound was not identified. The formation of
these compounds was likely a consequence of a number of coinciding
factors, including high temperatures, higher than stoichiometric equivalents
of the alkylating agent, and the increased electrophilicity of the
indole upon the introduction of the first tert-butyl
substituent. Lowering the reaction temperature by 20 °C and decreasing
the reaction time eliminated the formation of the trialkylated product
and reduced the amount of dialkylated product created. Surprisingly,
lowering the amount of 2-chloro-2-methylpropane appeared to have an
effect opposite what was desired, as the amount of dialkylated product
increased from 7% to 15% (by NMR) when the number of equivalents of
2-chloro-2-methylpropane was lowered from 1.5 to 1.0. Under the optimized
conditions, the desired 3-tert-butyl-7-bromoindole
was isolated in a 36% yield following column chromatography (Scheme ).
Scheme 3
Optimized Conditions
for the Formation of 7-Bromo-3-tert-butylindole 11
Synthesis of 7,7′-Amino-3-tert-butyldiindole 12 and Stability Investigations
The previously established
palladium-catalyzed cross-coupling conditions for the 6,6′-diindolylamine
and unsubstituted 7,7′-diindolylamine systems were applied
to the reaction of 7-aminoindole with 7-bromo-3-tert-butylindole (Scheme ). This provided one major product, which was isolated after column
chromatography in 59% yield as a slightly grayish oil that solidified
upon exposure to deuterated chloroform. The 1H NMR spectrum
of the material was consistent with the desired compound 12, but the 13C spectrum appeared to lack one aromatic quaternary
carbon signal. DEPT135, HSQC, and HMBC NMR experiments were performed
to verify the structure. These experiments revealed overlapping 13C carbon signals for the 7 and 7′ carbon atoms and
confirmed the assignment of the product as the 7,7′-amino-3-tert-butyldiindole 12.
Scheme 4
Palladium-Catalyzed
Cross-Coupling Reaction of 7 and 11 to Form
7,7′-Amino-3-tert-butyl-diindole 12
In contrast to the unsubstituted
diindolylamine compounds 8a, 8b, 9a, and 9b,
the tert-butyl substituted compound 12 exhibited substantially improved stability in air. In the solid
phase, the compound was stable for several months at room temperature
or below. However, as an oil or in solution the compound completely
decomposed in days to weeks, even when stored at subzero Celsius temperatures.
The instability of the compound in solution prevented the acquisition
of a single-crystal X-ray structure of diindolylamine 12, as attempts to grow crystals invariably led to decomposition.With the diindolylamine 12 in hand, the nature of
the diindolylamine instability was explored. The suspected two electron,
two proton oxidation to form the diindolylmethene 13 was
investigated using DDQ as the oxidant. The addition of DDQ to a solution
of 12 at room temperature immediately afforded a dark
precipitate, and TLC indicated the complete consumption of the starting
material within 10 min. The precipitate was isolated as a black solid,
which dissolved in d6-acetone to give
a dark blue solution. The product structure was not able to be confirmed
by 1H NMR spectroscopy as the spectrum displayed very broad
peaks, which could be indicative of a number of phenomena, including
(i) aggregation, (ii) slow tautomerization of diindolylmethene 13 on the NMR time scale (Figure ), or (iii) formation of oligomers during
the oxidation reaction. Mass spectroscopy was also inconclusive, providing
no [M + H] peak but instead a possible [2M + H] peak. In order to
elucidate whether tautomerization was occurring, attempts were made
to N-alkylate or metalate the presumed 13. However, treating
the precipitate with sodium hydride and iodomethane or with triethylamine
and either PtCl2(PhCN)2 or PtCl2(COD)2 resulted in mixtures of unidentifiable products.
Figure 5
Possible tautomerization
of asymmetric diindolylmethene 13.
Possible tautomerization
of asymmetric diindolylmethene 13.Oxidation of 12 using Ag2O in dichloromethane
resulted in a much slower reaction (consumption of starting material
in five days) than with DDQ and yielded a qualitatively more soluble
black product. The 1H NMR spectrum of the product was again
very broad, and UV–visible-NIR absorption spectra of the products
of the two oxidation reactions (DDQ and Ag2O) were obtained
for comparative identification (Figure ). The absorption spectra of the two products are demonstrably
different, although they share similar features. Both absorb most
strongly in the UV, and have a broad, relatively shapeless absorption
band across the rest of the spectral region examined. These features,
along with the trailing absorption past 1100 nm, suggest that oligomerization
is the outcome of the oxidation of 12. The differences
in the absorption spectra could be the result of the two oxidation
reactions generating mixtures of oligomers that have different product
distributions.
Figure 6
UV–vis-NIR absorption spectra of the products of
the oxidation
of 12 with DDQ (dashed black line) and Ag2O (solid blue line).
UV–vis-NIR absorption spectra of the products of
the oxidation
of 12 with DDQ (dashed black line) and Ag2O (solid blue line).Cyclic voltammetry experiments
on 7,7′-amino-3-tert-butyl-diindole 12 provided further evidence that oligomerization
was occurring during oxidation. The diindolylamine 12 has an irreversible one-electron oxidation at a relatively mild
potential of 0.165 V vs Fc/Fc+ and a multielectron irreversible
oxidation at 0.99–1.29 V vs Fc/Fc+ (Figure ). When the switching potential
was set lower than the potential of the second oxidation, the first
oxidation wave was still irreversible. The first oxidation presumably
happens with the loss of a proton, and repeated cycling showed no
change in the shape, indicating that oligomerization is not an issue
in the first oxidation (Figure ). The second oxidation does show evidence of oligomerization,
with the shape of the wave changing dramatically with repeat cycling
(Figure S1) and the concurrent deposition
of a dark glossy material on the carbon working electrode. These observations
are consistent with oxidative oligomerization in the tert-butyldiindolylamine compound 12 and suggest that the
dark insoluble precipitates formed during preparation and isolation
of the unsubstituted diindolylamines 8a, 8b, 9a, and 9b were in fact mixtures of oligomers
formed through air oxidation.
Figure 7
Cyclic voltammogram of 7,7′-amino-3-tert-butyl-diindole 12. The concentration of
the analyte
in dichloromethane is ∼1 mM. The standard is Fc/Fc+, the electrolyte is 0.1 M Bu4NPF6, and the
scan rate is 100 mV s–1.
Figure 8
Cyclic
voltammogram of 7,7′-amino-3-tert-butyl-diindole 12 cycled six times. The concentration
of the analyte in dichloromethane is ∼1 mM. The standard is
Fc/Fc+, the electrolyte is 0.1 M Bu4NPF6, and the scan rate is 250 mV s–1.
Cyclic voltammogram of 7,7′-amino-3-tert-butyl-diindole 12. The concentration of
the analyte
in dichloromethane is ∼1 mM. The standard is Fc/Fc+, the electrolyte is 0.1 M Bu4NPF6, and the
scan rate is 100 mV s–1.Cyclic
voltammogram of 7,7′-amino-3-tert-butyl-diindole 12 cycled six times. The concentration
of the analyte in dichloromethane is ∼1 mM. The standard is
Fc/Fc+, the electrolyte is 0.1 M Bu4NPF6, and the scan rate is 250 mV s–1.
Conclusion
Buchwald–Hartwig
amination conditions have been identified
for the coupling of unprotected bromo indoles and amino indoles. The
conditions are selective for reaction of the aryl bromide and anilino
groups in the presence of the unprotected indole N–H moiety.
The conditions appear to be amenable to coupling reactions using N-protected
indoles as well. The facile and problematic oxidation of the aminodiindolyl
products has been investigated, and the resulting insoluble precipitates
have been attributed to oxidation-induced oligomerization based on
evidence from 1H NMR spectroscopy, UV–visible absorption
spectroscopy, and cyclic voltammetry. The introduction of a tert-butyl group at the C3 position of the bromoindole was
proven to be synthetically viable and resulted in the corresponding
7,7′-amino-3-tert-butyl diindolylamine 12 being less prone to oligomerization than diindolylamines
without substituents at the reactive sites.In retrospect, the
reactive nature of the diindolyl compounds is
not surprising. Indoles are already generally electron rich compounds,
and the diindolyl structure places a powerful electron-donating group
(an amine) as a substituent. Thus, chemists wishing to prepare and
use diindolyl compounds of the type described herein should be aware
of the tendency toward oxidative oligomerization inherent in these
structures. Rigorous air-free reaction, workup, and storage conditions
may be necessary for similar compounds, and the consideration of substituents
to block reactive sites on the rings (namely the 3 and 5 sites on
the indoles) should be considered when the design of the final compounds
allows such substitution.
Methods
General Methods
The reagents used were commercially
available. Commercially available reagents were used as received with
the exception of tert-butanol, which was dried and
stored over 4 Å molecular sieves. Reactions under an inert atmosphere
were performed using a Schlenck manifold, equipment, and techniques
unless otherwise indicated. Concentration of liquids was accomplished
by rotary evaporation unless stated otherwise.1H
NMR and 13C NMR were recorded at ambient temperature at
frequencies of of 500, 360, or 300 and 125, 90, or 75 MHz, respectively,
unless otherwise noted. The data are reported as follows: proton multiplicities
(s = singlet, d = doublet, t = triplet, q = quartet, m = multiplet,
br = broad, app = apparent), coupling constants, and integration.
Microanalyses were performed by Canadian Microanalytical Services
Ltd., Vancouver, BC, Canada. Mass spectrometry was performed by the
UBC Mass Spectrometry Center. Melting points are reported uncorrected.
Flash chromatography was performed using the indicated solvent system
on Caledon Laboratories silica gel (SiO2) 60 (70–230
mesh) or Alfa Aesar neutral activated aluminum oxide (Al2O3), Brockman grade 1, 58 Å (60 mesh). Infrared spectra
were recorded using a PerkinElmer Spectrum One instrument. Cyclic
voltammetry (CV) experiments were performed with a Bioanalytical Systems
CV50 voltammetric analyzer. CV experiments were performed using a
three-electrode setup consisting of a glassy carbon working electrode,
a platinum electrode, and a silver quasi-reference electrode. Ferrocene
was used as an internal reference. The electrolyte (tetrabutylammonium
hexafluorophosphate) was obtained from a commercial supplier and used
as received. Ground-state absorption spectra were obtained using an
Agilent 8453 UV–vis spectrophotometer.
Synthesis
6-Bromo-1-tert-butyldimethylsilyl indole (4b)
Tetrahydrofuran (6 mL) and 6-bromoindole (250
mg, 1.3 mmol) were added to a round-bottom flask under ambient conditions.
NaH (60% in mineral oil, 60 mg, 1.5 mmol) was added in portions, resulting
in a clear, reddish-orange mixture which was aged for ten minutes. Tert-butyldimethylsilyl chloride (211 mg, 1.4 mmol) was
added and the reaction immediately became cloudy and yellow. After
15 min, the reaction was quenched with water, followed by ethyl acetate.
The mixture was transferred to a separatory funnel, and the organic
layer was washed twice with water. The organic layer was dried over
anhydrous sodium sulfate, decanted, and concentrated to a faintly
brown oil. Column chromatography using silica gel (0.5 in. ×
8 in.) and 1:4 ethyl acetate/hexanes afforded the desired compound
as a white solid (220 mg, 55%). 1H NMR (300 MHz, CDCl3) δ 7.63 (s, 1H), 7.47 (d, J = 8.3
Hz, 1H), 7.21 (dd, J = 8.4, 1.7 Hz, 1H), 7.15 (d, J = 3.2 Hz, 1H), 6.58 (dd, J = 3.2, 0.8
Hz, 1H), 0.93 (s, 9H), 0.60 (s, 6H); 13C NMR (90 MHz, CDCl3) δ 141.9, 131.6, 130.2, 123.0, 121.7, 116.6, 115.0,
104.8, 26.2, 19.4; −4.0; IR (solid-ATR) 2927, 2855, 1147, 803,
789 cm–1; HRMS (ESI-TOF) m/z [M + H]+ calcd for C14H21BrNSi 310.0627.
7-Bromo-1-tert-butyldimethylsilyl
indole (5b)
Tetrahydrofuran (5 mL) and 7-bromoindole
(250
mg, 1.3 mmol) were added to a round-bottom flask under N2. The homogeneous solution was cooled to 0 C in an ice–water
bath, and NaH (60% in mineral oil, 62 mg, 1.6 mmol) was added in portions.
The reaction mixture was aged for 10 min, then tert-butyldimethylsilyl chloride (211 mg, 1.4 mmol) was added to the
mixture and the ice bath was removed. After 4 h, only a trace amount
of product was observed by TLC. The reaction was heated to reflux
and aged overnight. The reaction was cooled to room temperature before
water was added, followed by dichloromethane. The organic layer was
washed twice with water, dried over anhydrous sodium sulfate, decanted,
and concentrated to a reddish oil. Column chromatography using silica
gel (0.5 in. × 8 in.) and 1:4 ethyl acetate/hexanes gave the
desired compound as a pale yellow oil (105 mg, 24%). 1H
NMR (300 MHz, CDCl3) δ 7.55 (dd, J = 7.8, 1.2 Hz, 1H), 7.39–7.37 (m, 2H), 6.95 (t, J = 7.7 Hz, 1H), 6.63 (d, J = 3.4 Hz, 1H), 0.98 (s,
9H), 0.72 (s, 6H).
Di(1H-indol-6-yl)amine (8a)
Brett-Phos (8 mg, 0.015 mmol), Pd(OAc)2 (1.5 mg, 0.007
mmol), and tert-butanol (≈1.5 mL)were added
to a Schlenk flask. The flask was sealed with a rubber septum and
evacuated and backfilled with N2 four times. The flask
was placed in an approximately 110 °C sand bath for 3 min until
the reaction became dark brown and homogeneous. The flask was removed
from the sand bath and 6-bromoindole (13 mg, 0.065 mmol), 6-aminoindole
(10 mg, 0.075 mmol), and potassium carbonate (20 mg, 0.145 mmol) were
added under a steady N2 stream. The flask was carefully
evacuated and backfilled with N2 three times. The side
arm tap was closed, and the septum and tap were parafilmed in place.
The reaction was placed in the 110 °C sand bath and was aged
overnight. The reaction vessel was removed from the sand bath, and
the mixture was diluted with ethyl acetate, filtered, and concentrated
using rotary evaporation. Column chromatography using silica gel (0.25
in. × 7 in.) and 1:4 ethyl acetate/hexanes, followed by 100%
ethyl acetate, afforded the desired compound as a viscous gray oil.
Because the isolated compound decomposed rapidly, the compound was
not fully characterized. 1H NMR (300 MHz, CDCl3) δ 7.93 (s, br, 2H), 7.52 (d, J = 8.4 Hz,
2 H), 7.13 (d, J = 0.8 Hz, 2H), 7.09 (dd, J = 2.8, 2.4 Hz, 2H), 6.90 (dd, J = 8.4,
1.9 Hz, 2H), 6.48 (m, 2H), 5.68 (s, br, 1H).
X-Phos (12 mg, 0.03 mmol), Pd(OAc)2 (2.0 mg, 0.01 mmol),
and tert-butanol (≈3 mL) were added to a Schlenk
flask. The flask was sealed with a rubber septum, then evacuated and
backfilled with N2 four times. The flask was placed in
an approximately 110 °C sand bath for 3 min until the reaction
became yellow and homogeneous. The flask was removed from the sand
bath and 6-bromo-1-tertbutyldimethylsilyl indole 4.15b (40 mg, 0.13 mmol), 6-aminoindole (20 mg, 0.15 mmol), and potassium
carbonate (40 mg, 0.29 mmol) were added under a steady N2 stream. The flask was carefully evacuated and backfilled with N2 three times. The side arm tap was closed, and the septum
and tap were parafilmed in place. The reaction was placed in the 110
°C sand bath and aged for 60 h. The reaction vessel was removed
from the sand bath, and the reaction was diluted with ethyl acetate
and water. The layers were separated, and the organic layer was concentrated
using rotary evaporation. Column chromatography using silica gel (1
in. × 4 in.) and 1:4 ethyl acetate/hexanes gave the desired compound
as a vanishingly small amount of oil. Because the isolated compound
decomposed rapidly, the compound was not fully characterized. 1H NMR (300 MHz, CDCl3) δ 7.89 (s, br, 1H),
7.51 (d, J = 8.3 Hz, 1 H), 7.50 (d, J = 8.4 Hz, 1 H), 7.30 (d, J = 1.0 Hz, 1H), 7.08–7.05
(m, 3H), 6.89 (app dt, J = 8.3, 2.0 Hz, 2H), 6.55
(dd, J = 3.2, 0.8 Hz, 1H), 6.49–6.46 (m, 1H),
5.68 (s, br, 1H), 0.92 (s, 9H), 0.53 (s, 6H).
Di(1H-indol-7-yl)amine (9a)
Brett-Phos
(8 mg, 0.015 mmol), Pd(OAc)2 (1.5 mg, 0.007
mmol) and tert-butanol (≈1.5 mL)were added
to a Schlenk flask. The flask was sealed with a rubber septum and
evacuated and backfilled with N2 four times. The flask
was placed in an approximately 110 °C sand bath for 3 min until
the reaction became reddish-brown and homogeneous. The flask was removed
from the sand bath and 7-bromoindole (13 mg, 0.065 mmol), 7-aminoindole
(10 mg, 0.075 mmol), and potassium carbonate (20 mg, 0.145 mmol) were
added under a steady N2 stream. The flask was carefully
evacuated and backfilled with N2 three times. The side
arm tap was closed, and the septum and tap were parafilmed in place.
The reaction was placed in the 110 °C sand bath and aged overnight.
The reaction was removed from the sand bath, was diluted with ethyl
acetate, filtered, and concentrated using rotary evaporation. Column
chromatography using silica gel and 1:4:1 ethyl acetate/hexanes/acetone
afforded the desired compound as a viscous oil. Because the isolated
compound decomposed rapidly, the compound was not fully characterized. 1H NMR (300 MHz, CDCl3) δ 8.06 (s, br, 2H),
7.37 (d, J = 7.9 Hz, 2H), 7.08 (app t, J = 2.8 Hz, 2H), 7.03 (t, J = 7.7 Hz, 2H), 6.74 (dd, J = 7.5, 0.6 Hz, 2H), 6.54 (dd, J = 3.1,
2.1 Hz, 2H), 5.80 (s, br, 1H).
Dichloromethane (3 mL) and 7-bromoindole
(100 mg, 0.51 mmol) were added to a round-bottom flask. The solution
was mixed until homogeneous. K-10 montmorillonite clay (254 mg), and
water (0.1 mL) was added, the solution was thoroughly mixed and then
concentrated until no dichloromethane remained. The reaction was microwaved
on high power for 10 min. Then, another 0.1 mL of water was added,
and the reaction was microwaved for another 5 min. The reaction was
allowed to cool to room temperature. Dichloromethane was added, the
heterogeneous mixture was stirred and filtered. The filtrate was concentrated
to dryness. Treatment of the crude product with a mixture of dichloromethane
and hexanes removed a colored oil, leaving behind the desired compound
as a white solid, (30 mg, 30%). 1H NMR (500 MHz, d6-acetone) δ 10.35 (s, 2H), 10.29 (br
s, 2H), 7.35 (d, J = 7.9 Hz, 2H), 7.32 (d, J = 7.6 Hz, 2H), 7.21 (d, J = 7.5 Hz, 2H),
7.12–7.11 (m, 4H), 6.92 (t, J = 7.8 Hz, 2H),
(6.69 (t, J = 7.8 Hz, 2H); 13C NMR (125
MHz, d6-acetone) δ 136.1, 135.5,
133.7, 132.3, 128.4, 126.4, 124.9, 124.6, 121.43, 121.36, 120.1, 119.6,
110.5, 108.7, 104.9, 104.8; IR (KBr) 3414, 3369, 2921, 1718 (br),
1433, 1314, 1205, 777, 742 cm–1; HRMS (ESI-TOF) m/z [M – H]− calcd
for C32H17Br4N4 772.8187,
found 772.8201.
7-Bromo-3-tert-butylindole
(11)
Dichloromethane (10 mL) and 7-bromoindole
(1.00 g, 5.1
mmol) were added to a round-bottom flask. The solution was mixed until
homogeneous. K-10 montmorillonite clay (2.0 g) was added, the solution
was thoroughly mixed and then concentrated to dryness. The resulting
tan solid was transferred to a microwave vial. 2-chloro- 2-methylpropane
(0.83 mL, 7.7 mmol) was added, and the mixture was thoroughly combined.
The reaction was heated in a microwave at 110 °C for 5 min and
then allowed to cool to room temperature. Dichloromethane was added
and the heterogeneous mixture was stirred, filtered, and the filtrate
was concentrated to an oil. After purification by column chromatography
using silica gel and hexanes, the title compound was obtained as a
colorless oil (0.463 g, 36%). 1H NMR (300 MHz, CDCl3) δ 8.06 (br s, 1H), 7.77 (d, J = 8.0
Hz, 1H), 7.34 (dd, J = 7.6, 0.6 Hz, 1H), 7.02–6.97
(m, 2H), 1.46 (s, 9H); 13C NMR (90 MHz, CDCl3) δ 135.9, 128.2, 127.3, 123.9, 120.6, 120.04, 119.96, 105.1,
31.9, 30.8; IR (liquid-ATR) 3427, 2962, 1691, 778, 737 cm–1; HRMS (ESI-TOF) m/z [M –
H]− calcd for C12H14NBr 250.0231;
found 250.0231.
Brett-Phos (78 mg, 0.15 mmol), Pd(OAc)2 (16
mg, 0.070 mmol), and tert-butanol (≈8 mL)
were added to a Schlenk flask. The flask was sealed with a rubber
septum and evacuated and backfilled with N2 three times.
The flask was placed in an approximately 100 °C sand bath for
several minutes until the reaction became dark reddish-brown and homogeneous.
The flask was removed from the sandbath and 7-bromo-3-tert-butylindole 11 (160 mg, 0.64 mmol dissolved in approximately
6 mL tert-butanol), 7-aminoindole (84 mg, 0.64 mmol),
and potassium carbonate (193 mg, 1.4 mmol) were added under a steady
N2 stream. The flask was carefully evacuated and backfilled
with N2 three times. The side arm tap was closed, and the
septum and tap were parafilmed in place. The reaction was placed in
the sandbath, and the reaction was aged overnight. The reaction was
transferred from the Schlenk flask to a round-bottom flask using dichloromethane
and then was concentrated to a dark oily solid. The mixture was preabsorbed
onto silica gel and purified by column chromatography using 4:1 dichloromethane/hexanes
as the eluent. This afforded the desired compound as a foam, which
became a pale gray solid upon treatment with CDCl3 (115
mg, 59%). 1H NMR (360 MHz, CDCl3) δ 9.09
(br s, 1H), 8.80 (br s, 1H), 7.46 (d, J = 8.0 Hz,
1H), 7.26 (d, J = 7.9 Hz, 1H), 7.22 (app t, J = 2.8 Hz, 1H), 6.97–6.90 (m, 3H), 6.66 (d, J = 7.2 Hz, 1H), 6.65 (d, J = 7.4 Hz, 1H),
6.50 (dd, J = 2.0, 3.1 Hz, 1H), 6.37 (br s, 1H),
1.45 (s, 9H); 13C NMR (125 MHz, CD3CN) δ131.1,
130.4, 130.1, 129.7, 128.2, 127.4, 125.3, 121.0, 120.4, 120.0, 115.9,
115.0, 111.3, 111.1, 103.2, 32.2, 31.1; IR (solid-ATR) 3407, 3385,
2959, 1572, 1415, 1340, 722 cm–1; HRMS (ESI-TOF) m/z [M + H]+ calcd for C20H22N3 304.1814, found 304.1811.
Authors: Cory Valente; Selçuk Calimsiz; Ka Hou Hoi; Debasis Mallik; Mahmoud Sayah; Michael G Organ Journal: Angew Chem Int Ed Engl Date: 2012-01-27 Impact factor: 15.336
Authors: Nampally Sreenivasachary; Heiko Kroth; Pascal Benderitter; Anne Hamel; Yvan Varisco; David T Hickman; Wolfgang Froestl; Andrea Pfeifer; Andreas Muhs Journal: Bioorg Med Chem Lett Date: 2017-02-04 Impact factor: 2.823
Authors: Sepideh Sharif; Richard P Rucker; Nalin Chandrasoma; David Mitchell; Michael J Rodriguez; Robert D J Froese; Michael G Organ Journal: Angew Chem Int Ed Engl Date: 2015-06-10 Impact factor: 15.336
Authors: John F. Hartwig; Motoi Kawatsura; Sheila I. Hauck; Kevin H. Shaughnessy; Luis M. Alcazar-Roman Journal: J Org Chem Date: 1999-07-23 Impact factor: 4.354