| Literature DB >> 35185520 |
Yu Zheng1, Yin Liu2,3, Jiawen Wu2,3, Yi Xie4, Siyu Yang2,3, Wanting Li2,3, Huaiqing Sun2,3, Qing He5,6, Ting Wu2,3.
Abstract
BACKGROUND: Cognitive decline is the most dominant and patient-oriented symptom during the development of Alzheimer's disease (AD) and mild cognitive impairment (MCI). This study was designed to test the feasibility of hybrid convolutional neural networks and long-short-term memory (CNN-LSTM) modeling driven early decision-tailoring with the predicted long-term cognitive conversion in AD and MCI.Entities:
Keywords: Alzheimer’s disease; Alzheimer’s disease assessment scale; cognitive conversion; decision-tailoring; deep learning; medical treatment reassignment; mild cognitive impairment
Year: 2022 PMID: 35185520 PMCID: PMC8847748 DOI: 10.3389/fnagi.2021.813923
Source DB: PubMed Journal: Front Aging Neurosci ISSN: 1663-4365 Impact factor: 5.750
FIGURE 1Flowchart of this study.
FIGURE 2Workflow of CNN-LSTM modeling and architecture of proposed network composition. *The architecture of the hybrid CNN-LSTM model combines two modules. The CNN module (light pink) is composed of five fully connected layers and a rectified linear unit (ReLU) activation unit and then followed by a sigmoid activation function to generate a score representative of non-time dependent features. Next, the LSTM module (light green) was trained to extract both non- and time-dependent features to generate outputs for estimating cognitive conversion status in multiple time points. The attention block (light yellow) denoted an attention mechanism proposed by Vaswani et al. (2017) which was used to perform feature-weighted fusion across time steps to make an accurate prediction. *The yellow block used here refers to “scaled dot-product attention,” explicitly explained by Vaswani et al. (2017) Given a task-related query vector Q, it can calculate the attention value by calculating the attention distribution associated with the key (K) and assigning it to the value (V). This attention block is applied to find the “resonance” between hidden vectors from each time step, namely, find the most relevant embedding features for high-level representations recognition.
Demographics and cognitive conversion distribution at 3 and 6 months.
| Patient characteristics | Total ( | 3-month | 6-month | ||
| Cognition not improved ( | Cognition improved ( | Cognition not improved ( | Cognition improved ( | ||
|
| 69.75 (8.52) | 69.24 (9.17) | 70.58 (7.32) | 69.13 (9.07) | 70.79 (7.45) |
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| Male | 87 (38.84) | 51 (36.69) | 36 (42.35) | 52 (37.14) | 35 (47.67) |
| Female | 137 (61.16) | 88 (63.31) | 49 (57.65) | 88 (62.86) | 49 (58.33) |
| Education in year, mean (SD) | 13.00 (4.32) | 13.22 (4.72) | 12.66 (3.55) | 13.31 (4.79) | 12.49 (3.35) |
| Height in centimeter | 162.70 (3.69) | 162.71 (4.29) | 162.67 (2.44) | 162.61 (3.92) | 162.84 (3.30) |
| Weight in kilogram | 63.09 (4.98) | 62.72 (4.41) | 63.71 (5.77) | 62.58 (4.19) | 63.95 (6.00) |
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| Hypertension | 44 (19.64) | 27 (19.42) | 17 (20.00) | 28 (20.00) | 16 (19.05) |
| Diabetes mellitus | 16 (7.14) | 10 (7.19) | 6 (7.06) | 8 (5.71) | 8 (9.52) |
| Thyropathy | 6 (2.68) | 5 (3.60) | 1 (1.18) | 6 (4.29) | 0 (0.00) |
| Cardiovascular disorders | 13 (5.80) | 7 (5.04) | 6 (7.06) | 9 (6.43) | 4 (4.76) |
| Asthma | 3 (1.34) | 1 (0.72) | 2 (2.35) | 1 (0.71) | 2 (2.38) |
| Cerebrovascular disorders | 17 (7.59) | 14 (10.07) | 3 (3.53) | 13 (9.29) | 4 (4.76) |
| Hyperlithuria | 1 (0.45) | 1 (0.72) | 0 (0.00) | 0 (0.00) | 1 (1.19) |
| Hyperlipidemia | 7 (3.12) | 5 (3.60) | 2 (2.35) | 5 (3.57) | 2 (2.38) |
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| Observation | 62 (27.68) | 53 (38.13) | 9 (10.59) | 56 (40.00) | 6 (7.14) |
| Exercise | 22 (9.82) | 15 (10.79) | 7 (8.24) | 17 (12.14) | 5 (5.95) |
| Donepezil | 55 (24.55) | 30 (21.58) | 25 (29.41) | 26 (18.57) | 29 (34.52) |
| GBE | 38 (16.96) | 16 (11.51) | 22 (25.88) | 17 (12.14) | 21 (25.00) |
| Donepezil and GBE | 47 (20.98) | 25 (17.99) | 22 (25.88) | 24 (17.14) | 23 (27.38) |
| HIS, mean (SD) | 0.97 (0.81) | 1.01 (0.81) | 0.91 (0.81) | 0.99 (0.80) | 0.95 (0.83) |
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| Yes | 45 (20.09) | 26 (18.71) | 19 (22.35) | 24 (17.14) | 21 (25.00) |
| No | 179 (79.91) | 113 (81.29) | 66 (77.65) | 116 (82.86) | 63 (75.00) |
| MMSE, mean (SD) | 23.46 (3.83) | 23.96 (3.86) | 22.64 (3.64) | 23.94 (3.95) | 22.65 (3.49) |
| ADAS-Cog, mean (SD) | 16.62 (9.55) | 13.79 (8.88) | 21.25 (8.82) | 13.97 (9.26) | 21.04 (8.35) |
| IADL, mean (SD) | 15.63 (2.47) | 15.55 (2.38) | 15.75 (2.62) | 15.60 (2.34) | 15.68 (2.69) |
| NPI, mean (SD) | 3.47 (9.55) | 3.17 (7.44) | 3.97 (12.28) | 4.11 (11.49) | 2.41 (4.73) |
| QOL-AD, mean (SD) | 31.91 (6.26) | 32.53 (6.21) | 30.89 (6.23) | 32.33 (6.22) | 31.21 (6.30) |
| GDS, mean (SD) | 6.72 (6.44) | 6.66 (6.33) | 6.81 (6.65) | 6.64 (6.07) | 6.84 (7.04) |
| Anxiety, mean (SD) | 1.25 (1.94) | 0.79 (1.64) | 2.01 (2.16) | 0.84 (1.61) | 1.95 (2.24) |
| CDR, mean (SD) | 1.07 (0.27) | 1.07 (0.29) | 1.07 (0.26) | 1.06 (0.26) | 1.10 (0.30) |
| DSST, mean (SD) | 31.86 (8.02) | 32.27 (9.58) | 31.18 (4.39) | 31.99 (9.72) | 31.63 (3.82) |
| TMT A, mean (SD) | 82.88 (21.63) | 82.08 (24.95) | 84.18 (14.72) | 83.08 (26.00) | 82.53 (11.16) |
| TMT B, mean (SD) | 218.28 (56.84) | 217.75 (65.81) | 219.14 (38.24) | 217.94 (66.13) | 218.84 (36.84) |
FIGURE 3ROC comparisons of cognitive conversion at 3 and 6 months with CNN-LSTM modeling. (A) ROC comparisons of cognitive conversion at 3 months; (B) ROC comparisons of cognitive conversion at 6 months.
FIGURE 4Predictive performance evaluation of CNN-LSTM modeling with confusion matrix at 3 and 6 months. *Computed classification confusion matrix using our hybrid CNN-LSTM modeling in five-fold cross-validation. (A) Confusion matrix at 3 months; (B) Confusion matrix at 6 months.
Predictive performance evaluation of CNN-LSTM modeling at 3 and 6 months.
| Accuracy (95%CI) | Sensitivity (95%CI) | Specificity (95%CI) | Positive predictive value (95%CI) | Negative predictive value (95%CI) | F-score | AUC (95%CI) | AUPRC | ||
| Fold 0 | 3-month | 0.711 (0.557–0.836) | 0.875 (0.617–0.984) | 0.621 (0.423–0.793) | 0.560 (0.349–0.756) | 0.900 (0.683–0.988) | 0.683 | 0.737 (0.577–0.897) | 0.522 |
| 6-month | 0.844 (0.705–0.935) | 0.778 (0.524–0.936) | 0.889 (0.708–0.976) | 0.824 (0.566–0.962) | 0.857 (0.673–0.96) | 0.800 | 0.875 (0.760–0.989) | 0.818 | |
| Fold 1 | 3-month | 0.733 (0.581–0.854) | 0.813 (0.544–0.960) | 0.690 (0.492–0.847) | 0.591 (0.364–0.793) | 0.870 (0.664–0.972) | 0.684 | 0.754 (0.598–0.911) | 0.631 |
| 6-month | 0.844 (0.705–0.935) | 1.000 (0.782–1.000) | 0.767 (0.577–0.901) | 0.682 (0.451–0.861) | 1.000 (0.852–1.000) | 0.811 | 0.884 (0.766–1.000) | 0.666 | |
| Fold 2 | 3-month | 0.711 (0.557–0.836) | 0.790 (0.544–0.939) | 0.654 (0.443–0.828) | 0.625 (0.406–0.812) | 0.810 (0.581–0.946) | 0.698 | 0.761 (0.614–0.908) | 0.680 |
| 6-month | 0.867 (0.732–0.949) | 0.765 (0.501–0.932) | 0.929 (0.765–0.991) | 0.867 (0.595–0.983) | 0.867 (0.693–0.962) | 0.813 | 0.895 (0.787–1.000) | 0.806 | |
| Fold 3 | 3-month | 0.778 (0.629–0.888) | 0.611 (0.357–0.827) | 0.889 (0.708–0.976) | 0.786 (0.492–0.953) | 0.774 (0.589–0.904) | 0.688 | 0.758 (0.608–0.908) | 0.705 |
| 6-month | 0.778 (0.629–0.888) | 0.938 (0.698–0.998) | 0.690 (0.492–0.847) | 0.625 (0.406–0.812) | 0.952 (0.762–0.999) | 0.750 | 0.823 (0.685–0.962) | 0.571 | |
| Fold 4 | 3-month | 0.591 (0.432–0.737) | 1.00 (0.794–1.000) | 0.357 (0.186–0.559) | 0.471 (0.298–0.649) | 1.000 (0.692–1.000) | 0.640 | 0.670 (0.498–0.841) | 0.479 |
| 6-month | 0.750 (0.597–0.868) | 0.889 (0.653–0.986) | 0.654 (0.443–0.828) | 0.640 (0.425–0.820) | 0.895 (0.669,0.987) | 0.744 | 0.795 (0.653–0.936) | 0.693 |
FIGURE 5Demonstration of predictive accuracy stratified by age, gender, symptom severity, and intervention subtypes. (A) Predictive accuracy stratified by age at 3 months; (B) Predictive accuracy stratified by age at 6 months; (C) Predictive accuracy stratified by gender at 3 months; (D) Predictive accuracy stratified by gender at 6 months; (E) Predictive accuracy stratified by symptom severity at 3 months; (F) Predictive accuracy stratified by symptom severity at 6 months; (G) Predictive accuracy stratified by intervention subtypes at 3 months; (H) Predictive accuracy stratified by intervention subtypes at 6 months.
Predictive performance evaluation of CNN-LSTM-based withdrawal modeling at 6 months.
| Accuracy (95%CI) | Sensitivity (95%CI) | Specificity (95%CI) | Positive predictive value (95%CI) | Negative predictive value (95%CI) | F-score | AUC (95%CI) | AUPRC | |
| Fold 0 | 0.778 (0.629–0.888) | 0.556 (0.308–0.785) | 0.926 (0.757–0.991) | 0.833 (0.516–0.979) | 0.757 (0.577–0.889) | 0.667 | 0.796 (0.656–0.937) | 0.725 |
| Fold 1 | 0.756 (0.605–0.871) | 0.800 (0.519–0.957) | 0.733 (0.541–0.877) | 0.600 (0.361–0.809) | 0.880 (0.688–0.975) | 0.686 | 0.721 (0.554–0.888) | 0.499 |
| Fold 2 | 0.756 (0.605–0.871) | 0.941 (0.713–0.999) | 0.643 (0.441–0.814) | 0.615 (0.406–0.798) | 0.947 (0.740–0.999) | 0.744 | 0.803 (0.661–0.944) | 0.669 |
| Fold 3 | 0.689 (0.534–0.818) | 0.500 (0.247–0.753) | 0.793 (0.603–0.920) | 0.571 (0.289–0.823) | 0.742 (0.554–0.881) | 0.533 | 0.663 (0.491–0.834) | 0.517 |
| Fold 4 | 0.682 (0.524–0.814) | 0.556 (0.308,0.785) | 0.769 (0.564–0.910) | 0.625 (0.354–0.848) | 0.714 (0.513–0.868) | 0.588 | 0.692 (0.529–0.855) | 0.575 |
FIGURE 6Recommended treatment reassignment following actual and predictive cognitive conversion at 3 and 6 months. (A) Treatment reassignment according to actual cognitive conversion at 3 months; (B) Treatment reassignment according to predicted cognitive conversion at 3 months; (C) Treatment reassignment according to actual cognitive conversion at 6 months; (D) Treatment reassignment according to predicted cognitive conversion at 6 months. *Another treatment indicates additional memantine, psychological interventions combined with pharmacological therapy or novel pharmacological approaches involving strategies to reduce amyloid and/or tau deposition.
Comparison between actual results and AI-predicted results after 3 and 6 months.
| 3-month | 6-month | |||||||
| Actual reassignment status | Predicted reassignment status |
| Actual reassignment status | Predicted reassignment status |
| |||
|
| 139/224 (62.05) | 104/224 (46.43) | 11.017 | 0.001 | 140/224 (62.50) | 121/224 (54.02) | 3.314 | 0.069 |
| Observation | 53/62 (85.48) | 53/62 (85.48) | 0.000 | 1.000 | 56/62 (90.32) | 54/62 (87.10) | 0.322 | 0.570 |
| Exercise | 15/22 (68.18) | 20/22 (90.91) | – | 0.132 | 17/22 (77.27) | 18/22 (81.82) | – | 1.000 |
| Monotherapy | 46/93 (49.46) | 20/93 (21.51) | 15.876 | 0.000 | 43/93 (46.24) | 28/93 (30.11) | 5.126 | 0.024 |
| Donepezil and GBE combination | 25/47 (53.19) | 11/47 (23.40) | 8.824 | 0.003 | 24/47 (51.06) | 21/47 (44.68) | 0.384 | 0.536 |
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| 25/30 (83.33) | 23/30 (76.67) | 0.147 | 0.519 | 24/30 (80.00) | 24/30 (80.00) | 0.000 | 1.000 | |
| Observation | 15/17 (10.79) | 16/17 (15.38) | – | 1.000 | 15/17 (10.71) | 15/17 (12.40) | – | 1.000 |
| Exercise | – | – | – | – | – | – | – | – |
| Monotherapy | 7/10 (5.04) | 5/10 (4.82) | – | 0.650 | 7/10 (5.00) | 6/10 (4.96) | – | 1.000 |
| Donepezil and GBE combination | 3/3 (2.16) | 2/3 (1.92) | – | 1.000 | 2/3 (1.43) | 3/3 (2.47) | – | 1.000 |
| 42/74 (56.76) | 35/74 (47.30) | 1.327 | 0.249 | 44/74 (59.50) | 37/74 (50.00) | 1.336 | 0.248 | |
| Observation | 15/18 (83.33) | 16/18 (88.89) | – | 1.000 | 17/18 (94.44) | 15/18 (83.33) | – | 0.603 |
| Exercise | 6/8 (75.00) | 8/8 (100.00) | – | 0.467 | 6/8 (75.00) | 7/8 (87.50) | – | 1.000 |
| Monotherapy | 12/30 (40.00) | 7/30 (23.33) | 1.926 | 0.165 | 10/30 (33.33) | 8/30 (26.67) | 0.317 | 0.573 |
| Donepezil and GBE combination | 9/18 (50.00) | 4/18 (22.22) | 3.010 | 0.083 | 11/18 (61.11) | 7/18 (38.89) | 1.778 | 0.182 |
| 49/87 (56.32) | 33/87 (37.93) | 5.905 | 0.015 | 51/87 (58.62) | 42/87 (48.28) | 1.871 | 0.171 | |
| Observation | 16/19 (84.21) | 15/19 (78.95) | – | 1.000 | 17/19 (89.47) | 17/19 (89.47) | – | 1.000 |
| Exercise | 6/9 (66.67) | 8/9 (88.89) | – | 0.576 | 7/9 (77.78) | 7/9 (77.78) | – | 1.000 |
| Monotherapy | 19/39 (66.67) | 7/39 (17.95) | 8.308 | 0.004 | 18/39 (46.15) | 10/39 (25.64) | 3.566 | 0.059 |
| Donepezil and GBE combination | 8/20 (40.00) | 3/20 (15.00) | – | 0.155 | 9/20 (45.00) | 8/20 (40.00) | 0.102 | 0.749 |
| 23/33 (69.79) | 13/33 (39.39) | 6.111 | 0.013 | 21/33 (63.64) | 18/33 (54.55) | 0.564 | 0.453 | |
| Observation | 7/8 (87.50) | 6/8 (75.00) | – | 1.000 | 7/8 (87.50) | 7/8 (87.50) | – | 1.000 |
| Exercise | 3/5 (60.00) | 4/5 (80.00) | – | 1.000 | 4/5 (80.00) | 4/5 (80.00) | – | 1.000 |
| Monotherapy | 8/14 (57.14) | 1/14 (7.14) | – | 0.013 | 8/14 (57.14) | 4/14 (28.57) | – | 0.252 |
| Donepezil and GBE combination | 5/6 (83.33) | 2/6 (33.33) | – | 0.242 | 2/6 (33.33) | 3/6 (50.00) | – | 1.000 |
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| 51/87 (58.62) | 40/87 (45.98) | 2.778 | 0.095 | 52/87 (59.77) | 45/87 (51.72) | 1.142 | 0.285 |
| Observation | 21/25 (84.00) | 22/25 (88.00) | – | 1.000 | 23/25 (92.00) | 21/25 (84.00) | – | 0.667 |
| Exercise | 8/10 (80.00) | 9/10 (90.00) | – | 1.000 | 9/10 (90.00) | 9/10 (90.00) | – | 1.000 |
| Monotherapy | 14/35 (40.00) | 6/35 (17.14) | 4.480 | 0.034 | 15/35 (42.86) | 8/35 (22.86) | 3.173 | 0.075 |
| Donepezil and GBE combination | 8/17 (47.06) | 3/17 (17.65) | – | 0.141 | 5/17 (29.41) | 7/17 (41.18) | 0.515 | 0.473 |
|
| 88/137 (64.23) | 64/137 (46.72) | 8.511 | 0.004 | 88/137 (64.23) | 76/137 (55.47) | 2.187 | 0.139 |
| Observation | 32/37 (86.49) | 31/37 (83.78) | 0.107 | 0.744 | 33/37 (89.19) | 33/37 (89.19) | – | 1.000 |
| Exercise | 7/12 (58.33) | 11/12 (91.67) | – | 0.155 | 8/12 (66.67) | 9/12 (75.00) | – | 1.000 |
| Monotherapy | 32/58 (55.17) | 14/58 (24.14) | 11.672 | 0.001 | 28/58 (48.28) | 20/58 (34.48) | 2.275 | 0.132 |
| Donepezil and GBE combination | 17/30 (55.17) | 8/30 (26.67) | 5.554 | 0.018 | 19/30 (63.33) | 14/30 (46.67) | 1.684 | 0.194 |
|
| 76/135 (56.30) | 56/135 (41.48) | 5.929 | 0.015 | 78/135 (57.78) | 66/135 (48.89) | 2.143 | 0.143 |
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| Observation | 24/31 (77.42) | 23/31 (74.19) | 0.088 | 0.767 | 27/31 (87.10) | 25/31 (80.65) | – | 0.731 |
| Exercise | 15/22 (68.18) | 20/22 (90.91) | – | 0.132 | 17/22 (77.27) | 18/22 (81.82) | – | 1.000 |
| Monotherapy | 21/52 (40.38) | 9/52 (17.31) | 6.746 | 0.009 | 20/52 (38.46) | 11/52 (21.54) | 3.722 | 0.054 |
| Donepezil and GBE combination | 16/30 (53.33) | 4/30 (13.33) | – | 0.002 | 14/30 (46.67) | 12/30 (40.00) | 0.271 | 0.602 |
|
| 63/89 (70.79) | 48/89 (53.93) | 5.385 | 0.020 | 62/135 (45.93) | 55/135 (40.74) | 1.222 | 0.269 |
| Observation | 29/31 (93.55) | 30/31 (96.77) | – | 1.000 | 29/31 (93.55) | 29/31 (93.55) | – | 1.000 |
| Exercise | – | – | – | – | – | – | – | – |
| Monotherapy | 25/41 (60.98) | 11/41 (26.83) | 9.705 | 0.002 | 23/41 (56.10) | 17/41 (41.46) | 1.757 | 0.185 |
| Donepezil and GBE combination | 9/17 (52.94) | 7/17 (41.18) | 0.472 | 0.492 | 10/17 (58.82) | 9/17 (52.94) | 0.119 | 0.730 |
FIGURE 9Recommended treatment reassignment following actual and predictive cognitive conversion according to symptom severity at 3 and 6 months. (A) Treatment reassignment according to actual and predicted cognitive conversion at 3 and 6 months in AD; (B) Treatment reassignment according to actual and predicted cognitive conversion at 3 and 6 months in MCI. *Another treatment indicates additional memantine, psychological interventions combined with pharmacological therapy or novel pharmacological approaches involving strategies to reduce amyloid and/or tau deposition.