Literature DB >> 35180374

Early Circulation of SARS-CoV-2, Congo, 2020.

Novy Charel Bobouaka Bonguili, Matthieu Fritz, Leadisaelle Hosanna Lenguiya, Pembe Issamou Mayengue, Félix Koukouikila-Koussounda, Louis Régis Dossou-Yovo, Cynthia Nkoua Badzi, Eric M Leroy, Fabien R Niama.   

Abstract

To determine when severe acute respiratory syndrome coronavirus 2 arrived in Congo, we retrospectively antibody tested 937 blood samples collected during September 2019-February 2020. Seropositivity significantly increased from 1% in December 2019 to 5.3% in February 2020, before the first officially reported case in March 2020, suggesting unexpected early virus circulation.

Entities:  

Keywords:  2019 novel coronavirus disease; COVID-19; Central Africa; Luminex; Republic of Congo; SARS-CoV-2; coronavirus disease; microsphere immunoassay; respiratory infections; retrospective study; serology; severe acute respiratory syndrome coronavirus 2; viruses; zoonoses

Mesh:

Year:  2022        PMID: 35180374      PMCID: PMC8962888          DOI: 10.3201/eid2804.212476

Source DB:  PubMed          Journal:  Emerg Infect Dis        ISSN: 1080-6040            Impact factor:   6.883


After coronavirus disease (COVID-19) was reported in China in December 2019, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) rapidly spread around the world; most countries officially reported their first cases within the first 3 months of 2020. However, reports from China show a possible earlier first case on November 17, 2019, detected retrospectively in Hubei Province (). Furthermore, phylogenetic analysis places the date of emergence as sometime during October–December 2019 (). These data suggest possible virus spread outside China before the first officially reported case in December 2019. Indeed, several retrospective studies that analyzed stored respiratory samples and wastewater for RNA detection, as well as serologic studies, suggest that SARS-CoV-2 may have been circulating in France, Spain, and Italy (–) before December 2019, months before the first official cases were reported. In central Africa, the first cases were officially reported during March 6–April 6, 2020; in Congo, the first case was reported on March 14, 2020. However, a serologic study in Kenya suggested that the virus was present in January 2020, two months before the first official case was reported (). Similar retrospective studies have not been conducted in Central Africa, meaning that the time of SARS-CoV-2 introduction in this region remains unknown. To provide a more accurate date for the arrival of SARS-CoV-2 in Congo, we retrospectively examined serum samples collected from persons with HIV (PWH) as a part of the national HIV program. These samples were collected during July 2019–February 2020 in Brazzaville and Pointe-Noire, the 2 biggest cities in Congo (Appendix). The study was conducted with approval of the Comité Technique de la Riposte à la Maladie à Coronavirus COVID-19, of which F.R.N. is president of the commission laboratory and research, and the Programme National de Lutte Contre le SIDA, led by the National Public Health laboratory of Congo, of which F.R.N. is director. We tested 1,212 plasma samples for SARS-CoV-2 IgG by using a microsphere immunoassay with beads coupled with receptor-binding domain antigen. We used 275 samples collected during July–August 2019 as negative controls and to establish the seropositivity cutoff value of our test (Appendix). The remaining 937 samples were collected September 2019–February 2020. Overall, 28/937 (3.0%) samples were positive: 22/655 (3.3%) from women, 5/241 (2.1%) from men, and 1/41 (2.4%) from a patient for whom sex was not reported. SARS-CoV-2 seropositivity rate was 1.7% (10/563) in Brazzaville and 4.8% (18/374) in Pointe-Noire. However, the Pointe-Noire samples were all collected in 2020 and compared with those from Brazzaville from the same period (5.4%; 6/110) did not differ significantly (p = 0.8). Although seropositivity was very low from September through November, seropositivity subsequently increased linearly, reaching 5.3% by February 2020 (Figure). Furthermore, seropositivity was significantly higher in January–February 2020 (p = 0.0002) than in the preceding 4 months of 2019 (Table). We also observed a significant increase between samples collected in Brazzaville in 2019 and those collected in Brazzaville in 2020 (p = 0.0052).
Figure

Number of plasma samples tested each month for severe acute respiratory syndrome coronavirus antibodies by using a microsphere immunoassay with beads coupled with receptor-binding domain antigen, Congo, September 2019–February 2020. Gray shading indicates the number of seronegative samples; orange, seropositive samples. Seropositivity is represented by black dots; error bars indicate 95% binomial CIs.

Table

Seropositivity of SARS-CoV-2 IgG among persons with HIV, Congo, July 2019–February 2020*

SampleNo. tested/no positive (% positive)p value
Sex
F655/22 (3.3)0.38
M241/5 (2.1)
Unknown
41/1 (2.4)
NA
Location0.0052 for Brazzaville 2020 vs. 2019; 0.8 for Brazzaville 2020 vs. Pointe-Noire 2020
Brazzaville 2019453/4 (0.8)
Brazzaville 2020110/6 (5.4)
Pointe-Noire 2020
374/18 (4.8)
Date
2019 September–December453/4 (0.9)0.0002
2020 January–February
484/24 (4.9)
Total937/28 (3.0)NA

*NA, not applicable; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2.

Number of plasma samples tested each month for severe acute respiratory syndrome coronavirus antibodies by using a microsphere immunoassay with beads coupled with receptor-binding domain antigen, Congo, September 2019–February 2020. Gray shading indicates the number of seronegative samples; orange, seropositive samples. Seropositivity is represented by black dots; error bars indicate 95% binomial CIs. *NA, not applicable; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2. Our results suggest increased SARS-CoV-2 circulation during January–February 2020 in Congo, indicating that the virus arrived in the country in December 2019. Our findings align with those of a serologic study of an asymptomatic general population in Congo, conducted in April 2020, which found 1.7% seropositivity for IgG and 2.5% for IgM (). The higher seropositivity found before April in our study may result from the higher sensitivity of the microsphere immunoassay assay compared with that of rapid tests (). Moreover, the PWH in our study may be more exposed to the virus than the randomized general population tested by Batchi-Bouyou et al. because PWH must regularly visit healthcare centers as part of their treatment. A recent study of participants with and without HIV tested during January–March 2020 in Kenya reported 3%–4% seropositivity, which did not differ between these populations (). Early circulation of SARS-CoV-2 has also been found in France, Spain, and Italy; seropositivity estimates in France increased from 1.3% in November 2019 to 6.7% in February 2020 (). There is some concern that seropositive samples may reflect possible cross-reactions with other coronaviruses that infect humans (human coronaviruses NL63, 229E, OC43, and HKU1 and Middle East respiratory system coronavirus) (). Although cross-reaction may explain the very low SARS-CoV-2 seropositivity in September–October 2019, the significant increase in seropositivity from the end of 2019 to the beginning of 2020 argues in favor of actual detection of antibodies directed against SARS-CoV-2. The early introduction of SARS-CoV-2 in Congo, and more generally in Africa, probably results from the intense trade activities that link Africa to China, leading to frequent exchange of persons between these countries. Determining early circulation patterns of SARS-CoV-2 in Africa or other countries requires retrospective testing of as many samples as possible from existing national sample repositories. Such studies will help enrich knowledge of the propagation of pathogens in the context of globalization of human and material exchange. To better evaluate the epidemiology of future pandemics, international organizations should help reinforce and develop repositories in low- and middle-income countries.

Appendix

Supplemental methods for study of early circulation of SARS-CoV-2, Congo, 2020.
  9 in total

1.  Emergence of genomic diversity and recurrent mutations in SARS-CoV-2.

Authors:  Lucy van Dorp; Mislav Acman; Damien Richard; Liam P Shaw; Charlotte E Ford; Louise Ormond; Christopher J Owen; Juanita Pang; Cedric C S Tan; Florencia A T Boshier; Arturo Torres Ortiz; François Balloux
Journal:  Infect Genet Evol       Date:  2020-05-05       Impact factor: 3.342

2.  High SARS-CoV-2 IgG/IGM seroprevalence in asymptomatic Congolese in Brazzaville, the Republic of Congo.

Authors:  Armel Landry Batchi-Bouyou; Line Lobaloba Ingoba; Matthieu Ndounga; Jeannhey Christevy Vouvoungui; Claujens Chastel Mfoutou Mapanguy; Kamal Rauchelvy Boumpoutou; Francine Ntoumi
Journal:  Int J Infect Dis       Date:  2020-12-25       Impact factor: 3.623

3.  Time Evolution of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Wastewater during the First Pandemic Wave of COVID-19 in the Metropolitan Area of Barcelona, Spain.

Authors:  Gemma Chavarria-Miró; Eduard Anfruns-Estrada; Adán Martínez-Velázquez; Mario Vázquez-Portero; Susana Guix; Miquel Paraira; Belén Galofré; Gloria Sánchez; Rosa M Pintó; Albert Bosch
Journal:  Appl Environ Microbiol       Date:  2021-03-11       Impact factor: 4.792

4.  Evidence of early circulation of SARS-CoV-2 in France: findings from the population-based "CONSTANCES" cohort.

Authors:  Fabrice Carrat; Julie Figoni; Joseph Henny; Jean-Claude Desenclos; Sofiane Kab; Xavier de Lamballerie; Marie Zins
Journal:  Eur J Epidemiol       Date:  2021-02-06       Impact factor: 8.082

5.  Cross-Reactive Antibodies to SARS-CoV-2 and MERS-CoV in Pre-COVID-19 Blood Samples from Sierra Leoneans.

Authors:  Rodrigo Borrega; Diana K S Nelson; Anatoliy P Koval; Nell G Bond; Megan L Heinrich; Megan M Rowland; Raju Lathigra; Duane J Bush; Irina Aimukanova; Whitney N Phinney; Sophia A Koval; Andrew R Hoffmann; Allison R Smither; Antoinette R Bell-Kareem; Lilia I Melnik; Kaylynn J Genemaras; Karissa Chao; Patricia Snarski; Alexandra B Melton; Jaikin E Harrell; Ashley A Smira; Debra H Elliott; Julie A Rouelle; Gilberto Sabino-Santos; Arnaud C Drouin; Mambu Momoh; John Demby Sandi; Augustine Goba; Robert J Samuels; Lansana Kanneh; Michael Gbakie; Zoe L Branco; Jeffrey G Shaffer; John S Schieffelin; James E Robinson; Dahlene N Fusco; Pardis C Sabeti; Kristian G Andersen; Donald S Grant; Matthew L Boisen; Luis M Branco; Robert F Garry
Journal:  Viruses       Date:  2021-11-21       Impact factor: 5.048

6.  Unexpected detection of SARS-CoV-2 antibodies in the prepandemic period in Italy.

Authors:  Giovanni Apolone; Emanuele Montomoli; Alessandro Manenti; Mattia Boeri; Federica Sabia; Inesa Hyseni; Livia Mazzini; Donata Martinuzzi; Laura Cantone; Gianluca Milanese; Stefano Sestini; Paola Suatoni; Alfonso Marchianò; Valentina Bollati; Gabriella Sozzi; Ugo Pastorino
Journal:  Tumori       Date:  2020-11-11       Impact factor: 2.098

7.  Severe acute respiratory syndrome coronavirus-2 antibody prevalence in people with and without HIV in rural Western Kenya, January to March 2020.

Authors:  Trevor A Crowell; Ibrahim I Daud; Jonah Maswai; John Owuoth; Valentine Sing'oei; Michelle Imbach; Nicole Dear; Fred Sawe; Leigh Anne Eller; Christina S Polyak; Julie A Ake
Journal:  AIDS       Date:  2021-11-15       Impact factor: 4.177

8.  SARS-CoV-2 has been circulating in northern Italy since December 2019: Evidence from environmental monitoring.

Authors:  Giuseppina La Rosa; Pamela Mancini; Giusy Bonanno Ferraro; Carolina Veneri; Marcello Iaconelli; Lucia Bonadonna; Luca Lucentini; Elisabetta Suffredini
Journal:  Sci Total Environ       Date:  2020-08-15       Impact factor: 7.963

9.  SARS-CoV-2 was already spreading in France in late December 2019.

Authors:  A Deslandes; V Berti; Y Tandjaoui-Lambotte; Chakib Alloui; E Carbonnelle; J R Zahar; S Brichler; Yves Cohen
Journal:  Int J Antimicrob Agents       Date:  2020-05-03       Impact factor: 5.283

  9 in total
  2 in total

1.  Dynamics of SARS-CoV-2 exposure in Malawian infants between February 2020 and May 2021.

Authors:  Silvia Baroncelli; Clementina Maria Galluzzo; Stefano Orlando; Robert Mphwere; Thom Kavalo; Richard Luhanga; Roberta Amici; Marco Floridia; Mauro Andreotti; Paola Scarcella; Maria Cristina Marazzi; Marina Giuliano
Journal:  J Clin Virol Plus       Date:  2022-09-16

2.  Prevalence of SARS-CoV-2 antibodies in the Republic of Congo in mid-2021.

Authors:  Fabien R Niama; Félix Koukouikila-Koussounda; Pembé Issamou Mayengue; Eric Elguero; Tarcisse Baloki Ngoulou; Victor Levier; Jamal Makran; Berthe A Iroungou; Avelin F Aghokeng
Journal:  IJID Reg       Date:  2022-10-06
  2 in total

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