| Literature DB >> 35179497 |
Leevi Limingoja1, Kari Antila2, Vesa Jormanainen1,3, Joel Röntynen4, Vilma Jägerroos4, Leena Soininen5, Hanna Nordlund6, Kristian Vepsäläinen3,7, Risto Kaikkonen4, Tea Lallukka1.
Abstract
BACKGROUND: To address the current COVID-19 and any future pandemic, we need robust, real-time, and population-scale collection and analysis of data. Rapid and comprehensive knowledge on the trends in reported symptoms in populations provides an earlier window into the progression of viral spread, and helps to predict the needs and timing of professional health care.Entities:
Keywords: COVID-19; COVID-19 forecasting; admission data; digital health; health care; health data; health technology; health technology assessment; machine learning; online symptom checker; pandemic; viral spread
Year: 2022 PMID: 35179497 PMCID: PMC8972109 DOI: 10.2196/35181
Source DB: PubMed Journal: JMIR Form Res ISSN: 2561-326X
Distribution of age, employment status, symptoms, and region of the filled-in Omaolo questionnaires.
| Characteristic | Total, n (%) | Men, n (%) | Women, n (%) | ||||
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| 0-9 | 8652 (2.08) | 4291 (2.81) | 4361 (1.66) | |||
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| 10-19 | 30,805 (7.41) | 10,689 (6.99) | 20,116 (7.68) | |||
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| 20-29 | 93,511 (22.50) | 30,241 (19.77) | 63,270 (24.10) | |||
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| 30-39 | 98,041 (23.59) | 34,727 (22.71) | 63,314 (24.11) | |||
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| 40-49 | 77,869 (18.74) | 29,010 (18.97) | 48,859 (18.61) | |||
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| 50-59 | 59,432 (14.30) | 22,788 (14.90) | 36,644 (13.96) | |||
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| 60-69 | 31,935 (7.69) | 13,392 (8.76) | 18,543 (7.06) | |||
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| 70-79 | 12,824 (3.09) | 6519 (4.26) | 6305 (2.40) | |||
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| ≥80 | 2453 (0.59) | 1286 (0.84) | 1167 (0.44) | |||
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| Total | 415,522 | 152,943 | 262,579 | |||
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| Not currently working | 133,199 (32.59) | 47,674 (31.90) | 85,525 (32.99) | |||
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| Health care worker | 65,379 (16.00) | 7953 (5.32) | 57,426 (22.15) | |||
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| Cannot avoid contact (service worker) | 102,544 (25.09) | 41,948 (28.07) | 60,596 (23.37) | |||
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| Can avoid contact | 107,558 (26.32) | 51,869 (34.71) | 55,689 (21.48) | |||
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| Total | 408,680 | 149,444 | 259,236 | |||
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| Cough | 140,661 (34.60) | 53,364 (36.53) | 87,297 (33.51) | |||
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| Trouble breathing | 31,143 (7.66) | 11,312 (7.74) | 19,831 (7.61) | |||
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| Sore throat | 86,985 (21) | 24,505 (16.78) | 62,480 (23.99) | |||
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| Headache | 35,886 (8.83) | 12,233 (8.37) | 23,653 (9.08) | |||
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| Myalgia | 10,213 (2.51) | 4552 (3.12) | 5661 (2.17) | |||
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| Vomiting | 7406 (1.82) | 2640 (1.81) | 4766 (1.83) | |||
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| Fever | 59,041 (14.52) | 23,842 (16.32) | 35,199 (13.51) | |||
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| Loss of smell | 433 (0.11) | 182 (0.12) | 251 (0.10) | |||
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| Dysphagia | 7971 (1.96) | 2946 (2.02) | 5025 (1.93) | |||
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| Trismus | 6469 (1.59) | 1938 (1.33) | 4531 (1.74) | |||
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| Trouble speaking | 6392 (1.57) | 2971 (2.03) | 3421 (1.31) | |||
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| Other | 13,952 (3.43) | 5589 (3.83) | 8363 (3.21) | |||
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| Total | 406,552 | 146,074 | 260,478 | |||
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| Western central Finland (city of Tampere) | 42,759 (14.50) | 15,370 (14.41) | 27,389 (14.55) | |||
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| Western coastal Finland (city of Turku) | 36,321 (12.31) | 13,155 (12.33) | 23,166 (12.30) | |||
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| Northern Finland (city of Oulu) | 27,419 (9.30) | 9894 (9.27) | 17,525 (9.31) | |||
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| Southern Finland (city of Helsinki) | 149,145 (50.56) | 54,447 (51.04) | 94,698 (50.29) | |||
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| Eastern Finland (city of Kuopio) | 39,340 (13.34) | 13,819 (12.95) | 25,521 (13.55) | |||
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| Total | 294,984 | 106,685 | 188,299 | |||
Figure 1COVID-19–related admissions predicted by linear regression and extreme gradient boosting (XGBoost) regression models, together with the true admission count during the first wave of the pandemic in 2020.
Comparison of the effect of Omaoloa and Hilmob data on the error of the models on expert-selected features.
| Features | Mean absolute error | Mean absolute percentage error | |
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| Omaolo+Hilmo | 137.79 | 31.33 |
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| Omaolo | 175.38 | 44.60 |
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| Hilmo | 184.37 | 34.98 |
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| Omaolo+Hilmo | 139.11 | 31.78 |
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| Omaolo | 165.18 | 46.94 |
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| Hilmo | 178.92 | 46.63 |
aOmaolo: A web-based, CE-marked symptom self-assessment tool and medical device.
bHilmo: National administrative register on hospital admissions.
Comparison of the effect of different feature selection methods on the error of the models.
| Feature selection | Mean absolute error | Mean absolute percentage error | |
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| Expert-selected | 137.79 | 31.33 |
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| F-score | 141.40 | 30.46 |
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| Mutual information | 112.16 | 24.23 |
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| Expert-selected | 139.11 | 31.78 |
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| F-score | 150.07 | 36.40 |
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| Mutual information | 146.12 | 33.33 |
The effect of oversampling on the error of the models with expert-selected features.
| Resampling | Mean absolute error | Mean absolute percentage error | |||
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| No resampling | 137.79 | 31.33 | ||
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| Oversampling | 131.13 | 30.47 | ||
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| No resampling | 139.11 | 31.78 | ||
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| Oversampling | 153.35 | 35.22 | ||