| Literature DB >> 35172857 |
Orlando Buendia1, Sneha Shankar2, Hadley Mahon2, Connor Toal2, Lara Menzies2, Pradeep Ravichandran2, Jane Roper2, Jag Takhar2, Rudy Benfredj2, Will Evans2.
Abstract
INTRODUCTION: This study implemented MendelScan, a primary care rare disease case-finding tool, into a UK National Health Service population. Rare disease diagnosis is challenging due to disease complexity and low physician awareness. The 2021 UK Rare Diseases Framework highlights as a key priority the need for faster diagnosis to improve clinical outcomes. METHODS ANDEntities:
Keywords: Database analysis; Electronic health records; Primary care; Rare disease
Mesh:
Year: 2022 PMID: 35172857 PMCID: PMC8848904 DOI: 10.1186/s13023-022-02216-w
Source DB: PubMed Journal: Orphanet J Rare Dis ISSN: 1750-1172 Impact factor: 4.123
Fig. 1MendelScan data flow and systems integration
Fig. 2Overview RD case-finding digital tool “MendelScan” implementation steps (Methods)
Variables for RD suitability of primary care records analysis
| Disease scoring | |
|---|---|
| Core variables | Metric |
| Is there an absence of significant mortality (> 30%) before five years of age? | Yes/no |
| Does the disease have signs and symptoms that are progressive and potentially missed? | Yes/no |
| Three or more clinical features likely to be encoded in the primary care EHR? | Yes/no |
| Does the disease have a high-specialised service pathway in the NHS? | Yes/no |
| Is the disease multisystemic? (≥ than three organ systems involved) | Yes/no |
| Point prevalence greater than 1:100,000? | Yes/no |
Variables for criteria suitability of primary care records analysis
| Criteria scoring | |
|---|---|
| Core variables | Metric |
| Has a criterion been identified in the literature review? | Yes/no |
| Does the criterion have findings that will be captured in structured data in the primary care EHR? | Yes/no |
Electronic health record (EHR) code types used
| EHR code type | Description |
|---|---|
| Vitals | Physiological values such as blood pressure, weight, height, and BMI |
| Demographics | Patients demographic information such as age, sex and ethnicity |
| Problem list | Patients list of active medical issues |
| Diagnosis | Diagnosis and diagnostic codes |
| Referrals | Referral ordered and admissions |
| Medications | Medications ordered and currently taken |
| Lab results | Numerical results of any laboratory tests |
Fig. 3Internal review process methods
Patient report feedback
| Please indicate which options below best describe this report. Tick box multiple answer questions | |
|---|---|
| Reasonable possible diagnosis (Advance for further evaluation) | |
| Diagnosis has already been excluded (Disease highlighted in the report was already studied) | |
| Patient has a clear alternative diagnosis that explains the clinical features flagged | |
| Patient has left GP practice | |
| Unable to accurately identify patient |
Fig. 4Feedback flowchart
Fig. 5Results overview of RD “MendelScan” implementation steps
Patient report feedback results
| Reasonable possible diagnosis (advanced for investigation) | Diagnosis has already been excluded | GP believes the patient has a clear alternative aetiology | Other (Patient no longer at the practice or unable to correctly identify patient record) | |
|---|---|---|---|---|
| Number of EHR | 9 | 6 | 10 | 3 |
Patient outcome feedback results
| Patient EHR | Suggested disease | Action taken by GP | Outcome |
|---|---|---|---|
| 1 | Classic Homocystinuria | Discuss with patient | Not available |
| 2 | Fabry Disease | Discuss with patient | Not available |
| 3 | Alpha-1 antitrypsin deficiency | Alpha-1-antitrypsin level | Normal |
| 4 | Alpha-1 antitrypsin deficiency | Alpha-1-antitrypsin level | Normal |
| 5 | Loeys-Dietz syndrome | Referral to a cardiologist | Seen by cardiologist, pending cardiologist letter |
| 6 | Loeys-Dietz syndrome | Referral to a cardiologist | Seen by cardiologist, pending cardiologist letter |
| 7 | Beckwith-Wiedemann syndrome | Discuss with patient | Not available |
| 8 | Alpha-1 antitrypsin deficiency | Alpha-1-antitrypsin level | Normal |
| 9 | DiGeorge syndrome—22q11 deletion syndrome | Referral to a clinical geneticist | Seen by clinical geneticist Microarray negative |
| Addison’s disease |
|---|
| Alkaptonuria |
| Alpers-Huttenlocher syndrome |
| Alpha-1 antitrypsin deficiency |
| Alpha-mannosidosis |
| Alport syndrome |
| Alström syndrome |
| Amaurosis congenita of Leber |
| Apert syndrome |
| Argininosuccinate lyase deficiency |
| Atypical osteogenesis imperfecta |
| Bardet-Biedl syndrome |
| Barth syndrome |
| Beckwith-Wiedemann syndrome |
| Behcet’s disease |
| Beta kethiolase deficiency |
| Carcinoid syndrome |
| Ceroid lipofuscinosis, neuronal |
| Charcot-Marie-Tooth disease |
| Chronic progressive external ophthalmoplegia (CPEO) |
| Citrullinemia I and II |
| Classic homocystinuria |
| Coffin-Lowry syndrome |
| Common variable immunodeficiency (CVID) |
| Cystinosis |
| Deficiency of long chain 3-hydroxyacyl-CoA dehydrogenase |
| Dermatomyositis |
| DiGeorge syndrome—22q11 deletion syndrome |
| Duane syndrome |
| EDS arthochalasia |
| EDS myopathic |
| Ehlers Danlos syndrome |
| Fabry disease |
| Fibrodysplasia ossificans progressiva |
| Fragile × syndrome |
| Gaucher disease |
| Glycogen storage disease type 2 (Pompe) |
| Glycogen storage disease type 5 (Mcardle) |
| Good syndrome |
| Hartnup disease |
| Hereditary angioedema |
| Insulinoma |
| Isovaleric acidemia |
| Li-Fraumeni syndrome |
| Loeys-Dietz syndrome |
| Lowe Syndrome |
| Marfan syndrome |
| Maternally inherited diabetes and deafness |
| MELAS syndrome |
| Metachromatic leukodystrophy |
| Mitochondrial diseases |
| Mucopolysaccharidosis |
| Myoclonic epilepsy with ragged red fibers (MERRF) |
| Neurofibromatosis type 1 |
| Neurofibromatosis type 2 |
| Neuropathy, ataxia, and retinitis pigmentosa (NARP) |
| Niemann-Pick B disease |
| Niemann-Pick C disease |
| Porphyria, acute intermittent |
| Porphyria, erythropoietic |
| Prader-Willi syndrome |
| Primary biliary cirrhosis |
| Primary Hyperoxaluria |
| Propionic acidemia |
| PTEN hamartoma tumour syndrome |
| Rendu-Osler-Weber disease (hereditary hemorrhagic telangiectasia) |
| Scleroderma |
| Sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome (SANDO) |
| Stickler syndrome |
| Sucrase-isomaltase deficiency |
| Transthyretin (TTR) amyloidosis |
| Tuberous sclerosis |
| Turner syndrome |
| Von Hippel-Lindau disease |
| William syndrome |
| Wolfram syndrome |
| # | Feedback questions (patient report feedback) |
|---|---|
| 1 | Please indicate the first 5 characters of the patient's encrypted NHS number |
| 2 | Please indicate which of the options below best describe this report. Tick box multiple answer questions Reasonable possible diagnosis (advance for further evaluation) Diagnosis has already been excluded Patient has clear alternative diagnosis Other (patient left study GP locality/unable to accurate identify patient) |
| 3 | Please indicate what action was or is planned to be taken by the GP. Tick box multiple answer questions Reviewed patient's medical history Added a note to review the patient on their next visit Recalled the patient for additional history taking and/or physical examination (include details in the comments below) Requested an additional test (include details in the comments below) Referred the patient to a specialist/secondary care (include details in the comments below) Discussed the patient with an expert (include the expert's name in the comments below) No action taken (include details in the comments below) Other |
| 4 | In order for us to minimise the time it takes to review cases. Please indicate how long it has taken you to review this case and reach your decision 0–5 min 5–15 min 15–30 min > 30 min |
| 5 | In order to ensure we constantly improve, please add any comments or remarks about how you have found the process. (e.g. Was it straightforward? Did you find it interesting? What could be improved?) |