| Literature DB >> 35171961 |
Niranjana Sahoo1, Kashyap Bhuyan1, Biswaranjan Panda1, Nrushingha Charan Behura1, Sangram Biswal1, Lipismita Samal1, Deepika Chaudhary2, Nitish Bansal2, Renu Singh2, Vinay G Joshi2, Naresh Jindal2, Nand K Mahajan2, Sushila Maan2, Chintu Ravishankar3, Ravindran Rajasekhar3, Jessica Radzio-Basu4, Catherine M Herzog4, Vivek Kapur4,5, Sunil K Mor6, Sagar M Goyal6.
Abstract
Newcastle disease (ND), caused by Newcastle disease virus (NDV), is a contagious disease that affects a variety of domestic and wild avian species. Though ND is vaccine-preventable, it is a persistent threat to poultry industry across the globe. The disease represents a leading cause of morbidity and mortality in chickens. To better understand the epidemiology of NDV among commercial and backyard chickens of Odisha, where chicken farming is being prioritized to assist with poverty alleviation, a cross-sectional study was conducted in two distinct seasons during 2018. Choanal swabs (n = 1361) from live birds (commercial layers, broilers, and backyard chicken) and tracheal tissues from dead birds (n = 10) were collected and tested by real-time reverse transcription polymerase chain reaction (RT-PCR) for the presence of matrix (M) and fusion (F) genes of NDV. Risk factors at the flock and individual bird levels (health status, ND vaccination status, geographical zone, management system, and housing) were assessed using multivariable logistic regression analyses. Of the 1371 samples tested, 160 were positive for M gene amplification indicating an overall apparent prevalence of 11.7% (95% CI 10.1-13.5%). Circulation of virulent NDV strains was also evident with apparent prevalence of 8.1% (13/160; 95% CI: 4.8-13.4%). In addition, commercial birds had significantly higher odds (75%) of being infected with NDV as compared to backyard poultry (p = 0.01). This study helps fill a knowledge gap in the prevalence and distribution of NDV in apparently healthy birds in eastern India, and provides a framework for future longitudinal research of NDV risk and mitigation in targeted geographies-a step forward for effective control of ND in Odisha.Entities:
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Year: 2022 PMID: 35171961 PMCID: PMC8849498 DOI: 10.1371/journal.pone.0264028
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Distribution of M-gene positive samples across Odisha in sampling zones 1 (light greed), 2 (green) and 3 (dark green).
The maps show the distribution of samples in Odisha (A) which tested positive (red, red halo) or negative (gray) for the NDV M-gene in layers (B), backyard birds (C) and commercial broilers (D). (Map created using the Free and Open Source QGIS).
Primers and probes used for M and F gene amplification of Newcastle disease virus.
| Targeted gene [Ref.] | Oligo name | Primer/ probe | Primer/probe sequence |
|---|---|---|---|
| M+4100 | 5’ Primer | 5’- | |
| M+4169 | Probe | 5’-(FAM) | |
| M-4220 | 3’ Primer | 5’- | |
| VF1 | 5’ Primer | 5’ | |
| V probe | Probe | 5’-(FAM) | |
| VR2 | 3’ Primer | 5’ |
Sampling of chicken according to the management system.
| Category | Management system | No. of farms | No of birds sampled |
|---|---|---|---|
|
| Extensive/Semi-intensive | 117 | 708 |
|
| Intensive | 30 | 411 |
|
| Intensive | 10 | 252 |
| Total | 157 | 1371 | |
Odds Ratio with 95% Confidence Intervals of risk factors for prevalence of Newcastle disease virus in Odisha chickens on the basis of M gene detection.
| Dependent: status | M gene Negative (%) | M gene Positive (%; 95% C I | Multivariable Odds Ratio (95% C I) | P value | Multivariable Risk Ratio (95% CI) | |
|---|---|---|---|---|---|---|
|
| Female | 1012 (87.9) | 139 (12.1; 10.3–14.1) | - | ||
| Male | 199 (90.5) | 21 (9.5; 6.1–14.4) | 0.97 (0.57–1.57) | 0.900 | 0.97 (0.61,1.47) | |
|
| I | 482 (88.8) | 61 (11.2; 8.8–14.2) | - | ||
| II | 467 (90.9) | 47 (9.1; 6.9–12.1) | 0.88 (0.57–1.36) | 0.568 | 0.89 (0.6,1.31) | |
| III | 262 (83.4) | 52 (16.6; 12.7–21.2) | 1.59 (1.02–2.48) | 0.041 | 1.49 (1.02,2.12) | |
|
| Non-migratory | 1142 (88.3) | 151 (11.7; 10.0–13.6) | - | ||
| Migratory | 69 (88.5) | 9 (11.5; 5.7–21.3) | 0.91 (0.39–1.92) | 0.819 | 0.92 (0.42,1.74) | |
|
| N | 1121 (88.2) | 150 (11.8;10.1–13.7) | - | ||
| Y | 90 (90.0) | 10 (10.0; 5.2–18.0) | 0.73 (0.33–1.44) | 0.387 | 0.75 (0.36,1.37) | |
|
| Apparently healthy | 982 (88.5) | 127 (11.5; 9.7–13.5) | - | ||
| Dead | 9 (90.0) | 1 (10.0; 0.5–45.9) | 0.71 (0.04–4.05) | 0.754 | 0.74 (0.04,3) | |
| Sick | 220 (87.3) | 32 (12.7;9.0–17.6) | 1.11 (0.71–1.69) | 0.639 | 1.1 (0.73,1.57) | |
|
| Backyard | 639 (90.3) | 69 (9.7; 7.7–12.2) | - | ||
| Commercial | 572 (86.3) | 91 (13.7; 11.2–16.6) | 1.75 (1.15–2.70) | 0.010 | 1.63 (1.13,2.32) | |
*From two-sided proportion test.
Fig 2Risk factors impacting Newcastle disease prevalence in 2018 of Odisha state, India.
Prevalence of Newcastle disease virus in commercial and backyard poultry based on M gene detection in Odisha.
| Bird type | Flock size (Category) | No. of flocks | Total samples collected | M gene positive samples | Apparent Prevalence (95% Confidence interval) | True Prevalence (95% Confidence interval) |
|---|---|---|---|---|---|---|
|
| ≤20 (S) | 50 | 217 | 23 | 10.6 (7.2–15.4) | 6.6 (2.5–12.2) |
| 21–200 (M) | 44 | 429 | 46 | 10.7 (8.1–14.0) | 6.7 (3.7–10.6) | |
| >200 (L) | 3 | 62 | 0 | 0 (0, 5.8) | 0 (0, 1.0) | |
| Total | 97 | 708 | 69 | 9.7 (7.8, 12.2) | 5.6 (3.3, 8.4) | |
|
| ≤1000 (S) | 8 | 83 | 9 | 10.8 (5.8, 19.3) | 6.9 (1.0, 16.9) |
| 1001–5000 (M) | 17 | 240 | 28 | 11.7 (8.2, 16.3) | 7.8 (3.8, 13.4) | |
| >5000 (L) | 5 | 88 | 19 | 21.6 (14.3, 31.3) | 19.5 (10.9, 30.9) | |
| Total | 30 | 411 | 56 | 13.6 (10.6, 17.3) | 10.2 (6.6–14.5) | |
|
| ≤10000 (S) | 2 | 47 | 28 | 59.6 (45.3, 72.7) | 64.2 (47.5, 79.3) |
| 10001–50000 (M) | 2 | 47 | 3 | 6.4 (2.2, 17.2) | 1.6 (0, 14.3) | |
| 50001–100000 (L) | 2 | 56 | 4 | 7.1 (2.8, 17.0) | 2.5 (0, 14.1) | |
| >100000 (VL) | 3 | 102 | 0 | 0 (0, 3.6) | 0 (0, 0) | |
| Total | 9 | 252 | 35 | 13.9 (10.2, 18.7) | 10.5 (6.1–16.1) |
S = Small; M = Medium; L = Large; VL = Very Large.
Detection of NDV in various types of birds.
| Zone | Bird Type | No. of samples positive for M gene | No. positive for F gene |
|---|---|---|---|
| I | Backyard | 38 | 6 |
| Commercial broilers | 16 | 1 | |
| Commercial layers | 7 | 0 | |
| II | Backyard | 11 | 0 |
| Commercial broilers | 32 | 4 | |
| Commercial layers | 4 | 0 | |
| III | Backyard | 20 | 1 |
| Commercial broilers | 8 | 1 | |
| Commercial layers | 24 | 0 |