Derek Fleming1, Scott A Cunningham1, Robin Patel1,2. 1. Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinicgrid.66875.3a, Rochester, Minnesota, USA. 2. Division of Infectious Diseases, Department of Medicine, Mayo Clinicgrid.66875.3a, Rochester, Minnesota, USA.
Abstract
Lung transplant recipients (LTRs) are vulnerable to hyperammonemia syndrome (HS) in the early postoperative period, a condition typically unresponsive to nonantibiotic interventions. HS in LTRs is strongly correlated with Ureaplasma infection of the respiratory tract, although it is not well understood what makes LTRs preferentially susceptible to HS compared to other immunocompromised hosts. Ureaplasma species harbor highly active ureases, and postoperative LTRs commonly experience uremia. We hypothesized that uremia could be a potentiating comorbidity, providing increased substrate for ureaplasmal ureases. Using a novel dialyzed flow system, the ammonia-producing capacities of four isolates of Ureaplasma parvum and six isolates of Ureaplasma urealyticum in media formulations relating to normal and uremic host conditions were tested. For all isolates, growth under simulated uremic conditions resulted in increased ammonia production over 24 h, despite similar endpoint bacterial quantities. Further, transcripts of ureC (from the ureaplasmal urease gene cluster) from U. urealyticum IDRL-10763 and ATCC-27816 rose at similar rates under uremic and nonuremic conditions, with similar endpoint populations under the two conditions (despite markedly increased ammonia concentrations under uremic conditions), indicating that the difference in ammonia production by these isolates is due to increased urease activity, not expression. Lastly, uremic mice infected with an Escherichia coli strain harboring a U. urealyticum serovar 8 gene cluster exhibited higher blood ammonia levels compared to nonuremic mice infected with the same strain. Taken together, these data show that U. urealyticum and U. parvum produce more ammonia under uremic conditions compared to nonuremic conditions. This implies that uremia is a plausible contributing factor to Ureaplasma-induced HS in LTRs. IMPORTANCE Ureaplasma-induced hyperammonemia syndrome is a deadly complication affecting around 4% of lung transplant recipients and, to a lesser extent, other solid organ transplant patients. Understanding the underlying mechanisms will inform patient management, potentially decreasing mortality and morbidity. Here, it is shown that uremia is a plausible contributing factor to the pathophysiology of the condition.
Lung transplant recipients (LTRs) are vulnerable to hyperammonemia syndrome (HS) in the early postoperative period, a condition typically unresponsive to nonantibiotic interventions. HS in LTRs is strongly correlated with Ureaplasma infection of the respiratory tract, although it is not well understood what makes LTRs preferentially susceptible to HS compared to other immunocompromised hosts. Ureaplasma species harbor highly active ureases, and postoperative LTRs commonly experience uremia. We hypothesized that uremia could be a potentiating comorbidity, providing increased substrate for ureaplasmal ureases. Using a novel dialyzed flow system, the ammonia-producing capacities of four isolates of Ureaplasma parvum and six isolates of Ureaplasma urealyticum in media formulations relating to normal and uremic host conditions were tested. For all isolates, growth under simulated uremic conditions resulted in increased ammonia production over 24 h, despite similar endpoint bacterial quantities. Further, transcripts of ureC (from the ureaplasmal urease gene cluster) from U. urealyticum IDRL-10763 and ATCC-27816 rose at similar rates under uremic and nonuremic conditions, with similar endpoint populations under the two conditions (despite markedly increased ammonia concentrations under uremic conditions), indicating that the difference in ammonia production by these isolates is due to increased urease activity, not expression. Lastly, uremic mice infected with an Escherichia coli strain harboring a U. urealyticum serovar 8 gene cluster exhibited higher blood ammonia levels compared to nonuremic mice infected with the same strain. Taken together, these data show that U. urealyticum and U. parvum produce more ammonia under uremic conditions compared to nonuremic conditions. This implies that uremia is a plausible contributing factor to Ureaplasma-induced HS in LTRs. IMPORTANCE Ureaplasma-induced hyperammonemia syndrome is a deadly complication affecting around 4% of lung transplant recipients and, to a lesser extent, other solid organ transplant patients. Understanding the underlying mechanisms will inform patient management, potentially decreasing mortality and morbidity. Here, it is shown that uremia is a plausible contributing factor to the pathophysiology of the condition.
Thousands of lung transplants are performed every year in the United States, with numbers anticipated to grow as availability and survivability continue to improve. A primary reason for greater survivability in recent years has been the incorporation of strategies to minimize mortality caused by posttransplant infections. A contributor that has plagued lung transplant recipient (LTR) survival is hyperammonemia syndrome (HS), which occurs in around 4% of LTRs (1, 2). Ammonia (NH3) is a neurotoxin that, when present in excess, transverses the blood-brain barrier and causes cerebral edema (3, 4).HS following lung transplantation typically progresses from early identification of elevated blood NH3 levels or hyperammonemia (HA), causing altered mental status resulting in confusion, lethargy, obtundation, and agitation, to eventual cerebral edema, resulting in seizure, coma, and often death (5–9). HS that presents in LTRs is atypical in that these patients do not have underlying liver disease or urea cycle disorders. Further, nontargeted interventional efforts to suppress endogenous NH3 production biochemically or physiologically and/or increase NH3 excretion have had minimal impact.Recently, Ureaplasma urealyticum and Ureaplasma parvum were linked with HS in LTRs (10); the airways of every LTR presenting with unexplained HS studied (n = 13) tested positive for Ureaplasma species, likely of donor origin. Further evidence that Ureaplasma species are causative agents of HS in LTRs has come by way of in vivo studies with murine models, where it was shown that intratracheal combined with intraperitoneal infection with either U. urealyticum or U. parvum resulted in HA (11, 12). Ureaplasma species, which are normally considered commensal microbiota of the urogenital tract, produce a potent urease that splits urea into NH3 and CO2 as a means of ATP synthesis, powered by the NH3 gradient generated across the membrane (13, 14). Interestingly, 95% of ATP generated by Ureaplasma species is urea dependent, making it a requirement for growth (15). The high level of NH3 production from LTR Ureaplasma infection can exceed the capacity for detoxification by the host.While unexplained HS has been described in non-LTR transplant patient populations (2, 16–30), the prevalence rate of ∼4% seems highest, by far, in the LTR population. This suggests that the lung transplant scenario is specifically well suited to microbe-driven HS. LTRs are also particularly vulnerable to posttransplant uremia (31, 32), potentially providing an abundance of substrate for ureaplasmal ureases, leading to NH3 overproduction, overwhelming the detoxification capacity of the host.Here, the possibility that elevated blood urea in LTRs could potentially contribute to production of pathological levels of NH3 by Ureaplasma species was investigated. We hypothesized that, compared to nonuremic conditions, uremic conditions would result in increased NH3 production by ureaplasmal ureases both in vitro and in vivo, ultimately leading to a greater incidence of HS.
RESULTS
All Ureaplasma isolates produced significantly more ammonia under conditions related to uremia.
For all U. parvum and U. urealyticum isolates tested, growth in media containing 50 mg/dL urea (uremic conditions) resulted in significantly greater NH3 production than in media containing 10 mg/dL urea (normal conditions) over 24 h (Fig. 1). Isolates grown under uremic conditions produced, on average, 1777 (standard deviation [SD] = 264) µmol/L more NH3 than those grown under normal conditions. NH3 production was not significantly different between species, with U. parvum and U. urealyticum isolates producing averages of 1,854 µmol/L (SD = 67) µmol/L and 1,731 µmol/L (SD = 131) more NH3, respectively, under uremic conditions. There was no noticeable difference between patient respiratory isolates and commercially available urogenital isolates. The average difference in NH3 production between uremic and normal conditions for all patient respiratory isolates was 1,794 µmol/L (SD = 291) versus 1801 µmol/L (SD = 72) and 1,655 µmol/L (SD = 119) for U. parvum (ATCC 27815) and U. urealyticum (ATCC 27816) urogenital isolates, respectively. Between uremic and normal conditions, 24-h color changing units (CCU) counts were not significantly different (Fig. S2), indicating that NH3 production was not a result of different numbers of bacteria.
FIG 1
Average ammonia production by Ureaplasma isolates over 24 h under normal and uremic conditions. Isolates of U. parvum or U. urealyticum were grown in the dialyzed flow system under normal (10 mg/dL urea) or uremic (50 mg/dL urea) conditions for 24 h. The experiments were performed in triplicate. The control was uninfected medium. The significance between conditions for each isolate was determined via two-tailed unpaired t tests. **, P ≤ 0.01; ****, P ≤ 0.0001.
Average ammonia production by Ureaplasma isolates over 24 h under normal and uremic conditions. Isolates of U. parvum or U. urealyticum were grown in the dialyzed flow system under normal (10 mg/dL urea) or uremic (50 mg/dL urea) conditions for 24 h. The experiments were performed in triplicate. The control was uninfected medium. The significance between conditions for each isolate was determined via two-tailed unpaired t tests. **, P ≤ 0.01; ****, P ≤ 0.0001.
Increased ammonia production under uremic conditions was not due to increased urease production in two isolates of U. urealyticum.
Quantitative PCR (qPCR) was used to measure ureC gene copies, and quantitative reverse transcription PCR (qRT-PCR) to measure ureC transcripts over time for one clinical respiratory isolate (IDRL-10763) and one commercially available urogenital isolate (ATCC-27816) of U. urealyticum. It was found that, despite a significant increase in NH3 production for both isolates in the 50 mg/dL urea preparation, and despite similar endpoint populations (IDRL-10763: 7.23 × 108 and 7.84 × 108 copies/mL; ATCC-27816: 9.24 × 108 and 7.84 × 108 copies/mL for 10 and 50 mg/dL urea, respectively), rises in ureC transcripts were similar across conditions (Fig. 2). This indicates that greater urea availability does not result in increased urease production by U. urealyticum.
FIG 2
ureC transcript levels are similar with normal and elevated urea availability. 105 CFU/mL of U. urealyticum IDRL-10763 or U. urealyticum ATCC-27816 was grown in 10 mL 100 mM 2-(N-morpholino)ethanesulfonic acid (MES)-buffered U9 for 2 h at 37°C and added to a 1,000-kDa-pore-size dialysis tube that was submerged in a 250-mL flow bottle containing 100 mM MES-buffered U9 with either 10 or 50 mg/dL urea with a flow rate of 2 mL/h. (A) NH3 was measured via the modified Berthelot reaction at each time point from the cell-free exterior of the dialysis tube. (B) Quantitative reverse transcription PCR (qRT-PCR) was performed on 50 µL of culture collected at 12, 16, 20, and 22 h and placed in DNA/RNA shield. DNA was extracted using the Maxwell rapid sample concentrator, with a standard 108 copies/mL extraction control from the same stock of culture in DNA/RNA shield run for each extraction group. qRT-PCR was performed on a Roche LightCycler 2.0 with crossing threshold values compared to a standard curve. The significance between urea concentrations was determined via linear regression analysis: *, P ≤ 0.05.
ureC transcript levels are similar with normal and elevated urea availability. 105 CFU/mL of U. urealyticum IDRL-10763 or U. urealyticum ATCC-27816 was grown in 10 mL 100 mM 2-(N-morpholino)ethanesulfonic acid (MES)-buffered U9 for 2 h at 37°C and added to a 1,000-kDa-pore-size dialysis tube that was submerged in a 250-mL flow bottle containing 100 mM MES-buffered U9 with either 10 or 50 mg/dL urea with a flow rate of 2 mL/h. (A) NH3 was measured via the modified Berthelot reaction at each time point from the cell-free exterior of the dialysis tube. (B) Quantitative reverse transcription PCR (qRT-PCR) was performed on 50 µL of culture collected at 12, 16, 20, and 22 h and placed in DNA/RNA shield. DNA was extracted using the Maxwell rapid sample concentrator, with a standard 108 copies/mL extraction control from the same stock of culture in DNA/RNA shield run for each extraction group. qRT-PCR was performed on a Roche LightCycler 2.0 with crossing threshold values compared to a standard curve. The significance between urea concentrations was determined via linear regression analysis: *, P ≤ 0.05.
Uremic mice infected with an Escherichia coli strain expressing the U. urealyticum gene cluster exhibited elevated blood ammonia levels compared to nonuremic mice.
It was determined whether an E. coli strain harboring the U. urealyticum gene cluster (33) would produce more NH3 in uremic compared to nonuremic mice. Mice were immunosuppressed for 7 days with methylprednisone, tacrolimus, and mycophenolate mofetil, and half of the animals were administered 40 g/L urea ad libitum in their drinking water beginning 10 days prior to infection, resulting in elevated blood urea nitrogen (BUN) levels for urea-fed mice in comparison to control mice. The animals were infected intratracheally (IT) and intraperitoneally (IP) with 107 to 108 cells/mL of the urease-positive strain, the wild-type control, or saline + 0.1% agar (vehicle control). After 24 h, the animals were sacrificed; their blood was collected for NH3 measurement with a point-of-care meter (Woodley Equipment Company Ltd., WD5502 PocketChem BA Analyzer), blood CFU measurement (dilution and plating), and U. urealyticum
ureC qPCR; and their lungs were harvested for total lung CFU measurement and U. urealyticum
ureC qPCR. Despite insignificant differences between lung and blood populations (Fig. S3), infection with urease-positive E. coli in urea-fed mice resulted in significantly higher blood NH3 levels than all other groups (Fig. 3).
FIG 3
Blood ammonia is elevated in uremic mice infected with urease-positive E. coli compared to nonuremic mice infected with the same strain. Urea-fed (+ Urea) and normal mice were infected intraperitoneally and intratracheally with either wild-type (WT) or urease-positive E. coli (ure) or 0.1% saline agar. Blood NH3 was measured 24 h later (N = 12 animals per group; one-way analysis of variance [ANOVA]): *, P ≤ 0.05; **, P ≤ 0.01; ***, P ≤ 0.001; ****, P ≤ 0.0001.
Blood ammonia is elevated in uremic mice infected with urease-positive E. coli compared to nonuremic mice infected with the same strain. Urea-fed (+ Urea) and normal mice were infected intraperitoneally and intratracheally with either wild-type (WT) or urease-positive E. coli (ure) or 0.1% saline agar. Blood NH3 was measured 24 h later (N = 12 animals per group; one-way analysis of variance [ANOVA]): *, P ≤ 0.05; **, P ≤ 0.01; ***, P ≤ 0.001; ****, P ≤ 0.0001.
DISCUSSION
The results of this study show that conditions representative of uremia resulted in elevated production of NH3 by all Ureaplasma isolates tested. The discovery that Ureaplasma respiratory infections were the cause of the previously unexplained phenomenon of nonhepatic HS in early postoperative LTRs (10) has led to an improvement in patient care and a reduction in mortality rates. Still, what makes LTRs particularly vulnerable to this phenomenon remains unknown. Here, the potential impact of uremia in the early post-transplant period as a potentiating comorbidity was investigated. LTRs are frequently uremic due to acute renal failure (ARF). It has been estimated that as many as 75% of LTRs experience ARF postoperation due to renal hypoperfusion brought on by several factors, including (i) decreased circulating blood volume resulting from diuretic use to prevent pulmonary edema from leaky capillaries, (ii) nephrotoxic effects of calcineurin inhibitors, and/or (iii) reduced renal oxygenation due to postoperation hypoxia (31–36). We hypothesized that, among patients harboring a posttransplant Ureaplasma respiratory infection, elevated blood urea concentrations would provide greater substrate availability for ureaplasmal ureases, leading to the production of NH3 at sufficient levels to overwhelm the host detoxification capacity (Fig. 4).
FIG 4
Hypothetical mechanism of Ureaplasma-induced hyperammonemia syndrome in the context of kidney dysfunction in early post-transplant lung transplant recipients. Circle 1 shows that acute renal failure (ARF) due to renal hypoperfusion results in decreased elimination of urea from the blood via urine excretion. Circle 2 shows that increased blood urea availability provides additional substrate for ureaplasmal (purple cells) ureases in the infected respiratory tract, leading to greater NH3 (blue and gray NH3 molecule) production in comparison to normal blood urea concentrations. Circle 3 shows that elevated serum NH3 levels overwhelm the detoxification capacity of liver urea cycle enzymes, leading to hyperammonemia. Circle 4 shows that excess serum NH3 diffuses into astrocytes and other glial cells in the brain, causing them to swell and burst, resulting in cerebral edema and hyperammonemia syndrome. The figure was created using BioRender.
Hypothetical mechanism of Ureaplasma-induced hyperammonemia syndrome in the context of kidney dysfunction in early post-transplant lung transplant recipients. Circle 1 shows that acute renal failure (ARF) due to renal hypoperfusion results in decreased elimination of urea from the blood via urine excretion. Circle 2 shows that increased blood urea availability provides additional substrate for ureaplasmal (purple cells) ureases in the infected respiratory tract, leading to greater NH3 (blue and gray NH3 molecule) production in comparison to normal blood urea concentrations. Circle 3 shows that elevated serum NH3 levels overwhelm the detoxification capacity of liver urea cycle enzymes, leading to hyperammonemia. Circle 4 shows that excess serum NH3 diffuses into astrocytes and other glial cells in the brain, causing them to swell and burst, resulting in cerebral edema and hyperammonemia syndrome. The figure was created using BioRender.Using a novel dialyzed flow system, NH3 production of 10 isolates of U. parvum and U. urealyticum (8 clinical respiratory isolates and 2 commercially available urogenital isolates) over 24 h under conditions representative of normal (10 mg/dL) and elevated (50 mg/dL) BUN was tested. For all isolates tested, more NH3 was produced under uremic conditions. Further, endpoint population densities were not significantly different for normal compared to uremic conditions, indicating that greater NH3 production under uremic conditions can be credited to increased ureaplasmal urease activity. Previous studies have shown that Ureaplasma growth capacity is highly dependent on urea concentration in vitro (37). However, the novel flow system utilized here was designed to supply continuous urea at the desired concentration while at the same limiting increases in alkalinity to growth-inhibitory levels. With the same system, a comparison of NH3 production and qPCR and qRT-PCR copy counts by two isolates of U. urealyticum showed that the increase in NH3 production under the elevated urea condition over time was not the result of elevated urease production or greater bacterial population densities in comparison to the lower urea condition.With this in vitro data in hand, an E. coli strain harboring the U. urealyticum gene cluster was used to test whether uremic mice would experience greater ureaplasmal urease-induced HA compared to nonuremic mice. By supplying animals with urea in drinking water, mildly elevated BUN was achieved in comparison to mice given normal water. Uremic mice infected with the ureaplasmal urease-positive strain of E. coli experienced elevated blood NH3 levels in comparison to nonuremic mice infected with ureaplasmal urease-positive E. coli, as well as all other groups, including uremic and nonuremic animals infected with either urease-negative E. coli or vehicle control.There are several limitations to this study. First, these results were obtained with conditions related to mild, dietary uremia. More significant differences in BUN could be obtained with models of acute kidney injury, replicating conditions of ARF, or with non-ad libitum methods of urea feeding, which would theoretically lead to more significant differences in ureaplasmal urease-induced HA, given the enzyme capacities demonstrated herein (Fig. 4). Second, in the in vivo portion of this study, only the serotype 8 urease gene cluster was investigated; it is possible that other serotypes would not have the same level of responsiveness to increased urea concentrations in the blood. To this end, further investigation will be needed to determine universality across Ureaplasma species. Further, in vivo studies were performed using an E. coli strain that harbors a plasmid containing the U. urealyticum gene cluster and not a Ureaplasma isolate. This was done to provide a non-urease-producing control and because E. coli is easier to work with experimentally than are Ureaplasma species. Lastly, we chose to perform a qPCR/qRT-PCR comparison study (Fig. 2) on two representative U. urealyticum isolates from Fig. 1. Although the studied isolates showed increased NH3 production under uremic conditions, it is possible that urease expression may manifest differently in certain isolates.Taken together, these results provide strong in vitro and in vivo support for the hypothesis that posttransplant uremia may be a contributing factor to Ureaplasma-induced HS in LTRs. This study serves as a reminder that the effects of specific comorbidities on diseases of microbial metabolite production/overproduction should be more readily considered.
MATERIALS AND METHODS
Study isolates.
The isolates of U. parvum and U. urealyticum investigated here are listed in Table 1. They include three respiratory isolates of U. parvum and five respiratory isolates of U. urealyticum, as well as one commercially available urogenital isolate of each species (from ATCC). Patient respiratory isolates are stored at the Mayo Clinic Infectious Diseases Research Laboratory (IDRL). The isolates were grown to 107 CCU using a Ureaplasma bioreactor, as previously described (38). Aliquots in U9 media (Hardy Diagnostics) buffered with 100 mM 2-(N-morpholino)ethanesulfonic acid (MES) at pH 6.0, 500-µL aliquots were frozen at −80°C until use.
TABLE 1
Ureaplasma isolates studied
Species
Isolate no.
Source
U. parvum
IDRL-10774
Bronchoalveolar lavage fluid
U. parvum
IDRL-11887
Bronchoalveolar lavage fluid
U. parvum
IDRL-11264
Sputum
U. parvum
ATCC-27815
Urethritis, serovar 3
U. urealyticum
IDRL-10763
Bronchial washings
U. urealyticum
IDRL-10612
Bronchoalveolar lavage fluid
U. urealyticum
IDRL-10611
Bronchoalveolar lavage fluid
U. urealyticum
IDRL-11235
Tracheal secretions
U. urealyticum
IDRL-12698
Bronchoalveolar lavage fluid
U. urealyticum
ATCC-27816
Urethritis, serovar 4
Ureaplasma isolates studiedAn opal suppressor (under the control of an isopropylthio-β-d-galactoside [IPTG]-induced lacUV5 promoter) strain of E. coli harboring a plasmid containing the urease gene cluster of serotype 8 U. urealyticum (33) was utilized to study NH3 production in uremic versus nonuremic mice. The plasmid carried both chloramphenicol and ampicillin resistance for selection and maintenance of urease activity. The wild-type strain lacked the plasmid and was thus urease-negative and susceptible to both antibiotics. The cultures were grown in tryptic soy broth (TSB) for 18 h, with or without antibiotics, at 37°C with shaking, after which IPTG was added, and the cultures were incubated an additional 4 h. Prior to infection, urease production by the E. coli strain was verified by streaking on urea agar slants (Hardy Diagnostics; R42).
Dialyzed flow system.
10-mL cultures of 105 CCU/mL for all Ureaplasma isolates were encased in dialysis tubing (Specta/Por Float-A-Lyzer G2 1,000-kDa dialysis device; G235073) and submerged in 250 mL of 100 mM MES-buffered U9, allowing measurement of NH3 levels over time (Fig. 5). The entire device was incubated at 37°C, with fresh broth added and spent media removed via flow at 2 mL/hour. Urea concentrations in the growth media were varied to mimic normal and high BUN levels (10 and 50 mg/dL, respectively) in the flow chamber and inflow and were maintained at a standard deviation of 3 for the 50 mg/mL concentration and 1 for the 10 mg/mL concentration. The samples were taken from cell-free portions of the flow chamber (outside the dialysis tube) and collected into microcentrifuge tubes at 0 and 24 h, and NH3 and urea concentrations were tested using an NH3 assay kit (Abcam; ab102509) and a urea assay kit (Abcam; ab234052). Ureaplasma cells in the dialysis tubing were quantified at each collection time.
FIG 5
Schematic of the dialyzed flow system.
Schematic of the dialyzed flow system.For qPCR and qRT-PCR measurements over time, 105 CFU of U. urealyticum IDRL-10763 or ATCC-27816 was inoculated into 100 mM MES-buffered U9 medium and grown for 2 h at 37°C. After 2 h, the cultures were submerged in 250 mL of 100 mM MES-buffered U9 medium containing either 10 or 50 mg/dL urea and grown at 37°C for 22 h with 2 mL/h inflow and outflow from the exterior of the dialysis tube (i.e., cell-free portion of the system). At hours 12, 16, 20, and 22, 150 µL of culture material was collected from the dialysis tube, mixed 1:1 in DNA/RNA shield (Zymo Research), and stored at −80°C until quantitative PCR (qPCR) and quantitative reverse transcriptase PCR (qRT-PCR) assay. Additionally, 200 µL of medium from the exterior of the dialysis tube was collected and stored at −80°C for NH3 assay (Abcam, modified Berthelot) and urea assay. Sampling volumes at each time point (which were the same across all experimental groups) were not replaced as each draw represented 0.13% of the total volume per time point (which would be expected to have an insignificant impact on NH3 and urea quantification).
Experimental mouse model.
C3H male and female mice (18 to 22 g; Charles River Laboratories, Wilmington, MA) were pharmacologically immunosuppressed for 7 days with methylprednisone, tacrolimus, and mycophenolate mofetil; half of the animals were administered 40 g/L urea ad libitum in their drinking water beginning 10 days prior to infection, resulting in an average blood urea nitrogen level (BUN) of 38 mg/dL (SD = 14) for urea-fed mice and 28 mg/dL (SD = 6.97) for control mice (unpaired t test: P = 0.0156). For IT challenge, the mice were anesthetized with ketamine/xylazine (90/10 mg/kg); 50 μL of bacterial suspension (selected to ensure ureaplasmal entry into the airways as used in our prior work [11, 12]) was placed into their trachea using a 22-gauge curved gavage needle, after which the animals were placed in a vertical position for 10 min using a murine vertical stabilization apparatus (Fig. S1). For IP challenge, 100 μL of 107 to 108 CFU/mL bacterial suspension was injected into the peritoneum. After 24 h of infection, the animals were sacrificed, their blood was collected for NH3 measurement with a point-of-care meter (Woodley Equipment Company Ltd., WD5502 PocketChem BA analyzer), blood CFU measurement (dilution and plating), and U. urealyticum
ureC qPCR, and their lungs were harvested for total lung CFU measurement and U. urealyticum
ureC qPCR. A total of 12 mice were assigned to each experimental group. A sample size of 12 mice per group yields 80% power to detect a difference of 1.75 standard deviations or larger for levels of NH3 between two groups using two sample t tests.
Ethics statement.
This study was carried out in accordance with the recommendations in the Guide for the Care and Use of Laboratory Animals of the National Institutes of Health and was approved by Mayo Clinic Institutional Animal Care and Use Committee (protocol number A5004-20). The Mayo Clinic is Association for Assessment and Accreditation of Laboratory Animal Care (AAALAC) accredited (000717), registered with the U.S. Department of Agriculture (41-R-0006), and has an Assurance with the Office of Laboratory Animal Welfare (A3291-01). The mice were housed in a biosafety level 2, specific-pathogen-free, AAALAC-accredited facility. Sentinel mice were tested quarterly for murine pathogens; all were negative throughout the course of this study. The mice had ad libitum access to irradiated rodent food (LabDiet formula 5053) and water. The facility was environmentally controlled (temperature, 68 to 74°F; relative humidity, 30 to 70%; 12:12-h light:dark cycle). All efforts were made to minimize suffering. The animals were monitored twice daily, and anesthetized mice were monitored until awake. Mice were monitored for decreased activity, decreased body temperature, hunched stature, distress, and inability to eat and drink; if these occurred and were severe, the animals were humanely euthanized.
qPCR and qRT-PCR assays.
Nucleic acids were purified from tissue and culture material using a Maxwell RSC (Promega, Madison WI). DNA isolation was carried out with a Maxwell RSC tissue DNA kit and RNA isolated with a Maxwell RSC simplyRNA tissue kit as per the manufacturer’s instructions. Sample input for both kits was 100 µL, and elution output was 100 µL for DNA and 50 µL for RNA.The quantitative PCR assay for U. parvum and U. urealyticum has been previously described (39) and was performed with slight modifications to adapt the assay for use on the LightCycler 2.0 instrument. Briefly, 1× LightCycler DNA Master HybProbe was combined with 1× primer/probe set 1408 (TIB Molbiol, Howell Township, NJ) and an additional 3 mM MgCl2. A total of 15 µL of the complete master mix was combined with 5 µL of DNA extract in a LightCycler sample capillary. Thermocycling conditions were as follows: Denaturation at 95°C for 10 min; amplification for 45 cycles of 10 s at 95°C, 15 s at 60°C (single acquisition), and 15 s at 72°C; melting curve analysis/amplicon detection for 0 s at 95°C, 20s at 59°C, 20 s at 40°C (ramp rate of 0.2°C/s), 0 s at 80°C (ramp rate of 0.2°C/s and continuous acquisition); and cooling for 30 s at 40°C.The qRT-PCR assay was adapted from the above qPCR assay to include a RT-specific reverse primer (5′-TTGNTCAAANATTGGATCTTCC-3′). The complete master mix included 1× primer/probe set 1408, 0.25 mM RT-specific reverse primer, 1× SuperScript III Platinum One-Set qRT-PCR system buffer, 0.05× SuperScript enzyme, and 1 mM McCl2 (Invitrogen, Waltham, MA). 15 µL of the complete RT master mix was combined with 5 µL of RNA extract in a LightCycler sample capillary. The thermocycling conditions were as follows: reverse transcription/denaturation at 55°C for 15 min followed by 95°C for 2 min; amplification for 45 cycles of 10 s at 95°C, 20 s at 60°C (single acquisition), and 20 s at 72°C; and cooling for 30 s at 40°C. Plasmid control material (30-8706-01 U. urealyticum and 30–8706-03 U. parvum; TIB Molbiol) were serially diluted and used to generate quantification lines for each species. A single, 1 × 103 midpoint dilution of was included as a calibration control. Prequantified culture material preserved in DNA/RNA shield was included as a process control and carried through extraction and assayed with each experiment.
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